AbstractWRF model coupled to water table dynamics has been adapted to investigate the spatial and temporal evolution of wet and dry conditions over Lake Victoria Basin. Two 2‐year long simulations were conducted using coupled model with water table and the uncoupled (without water table) for wet and dry periods. Influence of water table on land–atmosphere coupling and interconnections among precipitation, soil moisture, evapotranspiration, and surface energy fluxes were examined. Overall, the coupled model simulated significantly higher monthly rainfall amounts during both the short (March‐May) and long (October‐December) rains of the wet year, which was more consistent with observations particularly over the lake surface and immediate hinterlands. Simulated monthly rainfall differences between coupled and uncoupled were pronounced during the peak of long rains, exceeding 100mm over the lake surface. Toward the end of the rainfall season (May) the difference was minimal. During the short rains significant differences occurred mostly in November, especially over the eastern shores. But during the relatively dry year minimal differences were generally witnessed throughout the year except in May, east of Lake Victoria. The coupled model simulated stronger matching among rainfall, soil moisture, and evapotranspiration over areas with shallow water table, for example in Kisumu to the east and Bukoba to the west. In these areas coupled model simulated higher soil moisture corresponding to higher evapotranspiration and precipitation. These interconnections were more pronounced during short and long rains in 1997 (wet) compared to 2010 (dry). Wet conditions over the gulf of Kisumu corresponded with rise in water table especially during October–December 1997 consistent with ENSO‐related flooding over the area. Hence, our study demonstrated that incorporating water table resulted in realistic interconnections between precipitation, soil moisture, ET, and surface energy fluxes, and could improve simulation and prediction of spatial‐temporal evolution of wet and dry conditions over Lake Victoria Basin.