The strategy of few or no-phosphorus fertilization in rice season but more in wheat season can effectively increase phosphorus use efficiency and reduce phosphorus loss through runoff and leaching. It remains unknown whether the lack of phosphorus will affect greenhouse gas emission in the rice season. We monitored the CH4 and N2O emission fluxes during the growth period of rice treated with normal phosphorus application (NPK) and no-phosphorus application (NK) in two long-term experimental fields in Suzhou and Yixing. The results showed that long-term no-phosphorus application promoted CH4 and N2O emission in both fields. Compared with the NPK treatment, CH4 and N2O emissions from the NK treatment significantly increased by 57% and 25% in Suzhou experi-mental field, respectively, while those in Yixing experimental field were also significantly increased by 221% and 70%, respectively. The contents of organic acid, dissolved organic carbon and available phosphorus in soil were reduced under long-term NK treatment, and they were closely related to CH4 emission. Soil available phosphorus content was significantly negatively correlated with CH4 emission (r=-0.987). The global warming potential (GWP) was greater in NK treatment than NPK treatment in both fields. Therefore, long-term no-phosphorus application could decrease the contents of organic acid, soluble organic carbon, and available phosphorus in soils, resulting in more CH4 and N2O emission in rice field.