Pumped storage power plants are now honored for different novelties mostly to do with large energy storage ability and electrical grid stabilization capacity. However the control of Reversible pump Turbines (RPT) operations within these plants is still an issue, where the so-called S-shape flow instabilities cause different problems especially when under low discharge operating conditions. Taking from the grounds that these instabilities have been found to mostly be based within the vaneless space between the guide vanes and the runner, this paper intends to investigate the effect of guide vanes opening (GVO) on runner flow characteristics. CFD-backed numerical simulations were carried out on a RPT complete flow passage under different GVOs; namely 17mm, 21mm and 25mm openings. Instabilities were found to take source from low flow conditions where resulting hydraulic losses maybe the trigger of s-shape characteristics appearance. The GVO however, showed the ability to tame the severity of these flow instabilities and associated pressure pulsations.