Resistant Inbred Lines Research Articles

GBS-Based SNP Map Pinpoints the QTL Associated With Sorghum Downy Mildew Resistance in Maize (Zea mays L.).

Sorghum downy mildew (SDM), caused by the biotrophic fungi Peronosclerospora sorghi , threatens maize production worldwide, including India. To identify quantitative trait loci (QTL) associated with resistance to SDM, we used a recombinant inbred line (RIL) population derived from a cross between resistant inbred line UMI936 (w) and susceptible inbred line UMI79. The RIL population was phenotyped for SDM resistance in three environments [E1-field (Coimbatore), E2-greenhouse (Coimbatore), and E3-field (Mandya)] and also utilized to construct the genetic linkage map by genotyping by sequencing (GBS) approach. The map comprises 1516 SNP markers in 10 linkage groups (LGs) with a total length of 6924.7 cM and an average marker distance of 4.57 cM. The QTL analysis with the phenotype and marker data detected nine QTL on chromosome 1, 2, 3, 5, 6, and 7 across three environments. Of these, QTL namely qDMR1.2, qDMR3.1, qDMR5.1, and qDMR6.1 were notable due to their high phenotypic variance. qDMR3.1 from chromosome 3 was detected in more than one environment (E1 and E2), explaining the 10.3% and 13.1% phenotypic variance. Three QTL, qDMR1.2, qDMR5.1, and qDMR6.1 from chromosomes 1, 5, and 6 were identified in either E1 or E3, explaining 15.2%–18% phenotypic variance. Moreover, genome mining on three QTL (qDMR3.1, qDMR5.1, and qDMR6.1) reveals the putative candidate genes related to SDM resistance. The information generated in this study will be helpful for map-based cloning and marker-assisted selection in maize breeding programs.

Evaluation and Identification of Resistance Lines and QTLs of Maize to Seedborne Fusarium verticillioides.

Internal fungal contamination in cereal grains may affect plant growth and result in health concerns for humans and animals. Fusarium verticillioides is a seedborne fungus that can systemically infect maize. However, few efforts had been devoted to studying the genetics of maize resistance to seedborne F. verticillioides. In this study, we developed a disease evaluation method to identify resistance to seedborne F. verticillioides in maize, by which a set of 121 diverse maize inbred lines were evaluated. A 160 F10-generation recombinant inbred line (RIL) population derived from a cross of the resistant (BT-1) and susceptible (N6) inbred line was further used to identify major quantitative trait loci (QTLs) for seedborne F. verticillioides resistance. Eighteen inbred lines with a high resistance to seedborne F. verticillioides were characterized and could be used as potential germplasm resources for genetic improvement of maize resistance. Six QTLs with high heritability across multiple environments were detected on chromosomes 3, 4, 6, and 10, among which was a major QTL, qISFR4-1. Located on chromosome 4 at the interval of 12922609-13418025, qISFR4-1 could explain 16.63% of the total phenotypic variance. Distinct expression profiles of eight candidate genes in qISFR4-1 between BT-1 and N6 inbred lines suggested their pivotal regulatory roles in seedborne F. verticillioides resistance. Taken together, these results will improve our understanding of the resistant mechanisms of seedborne F. verticillioides and would provide valuable germplasm resources for disease resistance breeding in maize.

Comparative transcriptomic analysis of powdery mildew resistant and susceptible melon inbred lines to identify the genes involved in the response to Podosphaera xanthii infection

Powdery mildew (PM) is a major fungal disease caused by Podosphaera xanthii or Golovinomyces cichoracearum in melons worldwide. However, the genes and mechanism involved in the resistance to PM in melon have not yet been elucidated. In this study, RNA-seq analysis of melon between a resistant (wm-6) inbred line and a susceptible (12D-1) inbred line was conducted under infected and control conditions. A total of 3000 significant differentially expressed genes (DEGs) were identified, with 1526 DEGs between the two lines under the controlled conditions, suggesting a significant difference in the basal gene expressions between them. Additionally, our results indicated that: (1) the active response of 12D-1 to P. xanthii infection significantly differed from that of wm-6; (2) the regulatory network of 12D-1 in response to P. xanthii infection was more complex and diverse than that of wm-6; (3) the pathways related to phenylpropanoid biosynthesis and the DEGs that encode glucan endo-1,3-beta- glucosidases and cytochrome P450 proteins may play important roles in the resistance of P. xanthii infection; (4) the peroxidase (POD) activities were induced in the two lines by upregulating the expression of different POD genes during PM infection. These results will not only provide new insights into molecular resistance mechanisms against PM infection but may also provide us with a new gene pool for breeding PM-resistant melon varieties.

Optimizing use of U.S. Ex-PVP inbred lines for enhancing agronomic performance of tropical Striga resistant maize inbred lines

BackgroundTemperate maize inbred lines with expired Plant Variety Protection Act certificates (Ex-PVP) are potential sources of desirable alleles for tropical germplasm improvement. Up to now, the usefulness of the Ex-PVP inbred lines as a potential source of novel beneficial alleles for Striga hermonthica resistance breeding to enhance genetic gain in tropical maize has not been reported.ResultsThis study was thus conducted to characterize the combining ability of 24 Ex-PVP inbred lines in crosses with two tropical Striga resistant inbred testers under Striga-infested and non-infested conditions and across three locations for 2 years. Many testcrosses between Ex-PVP inbred lines and the first tester (T1) produced competitive or significantly higher grain yields compared to the hybrid between the two resistant testers under Striga infested and non-infested conditions and across multiple test locations. Also, most of the testcrosses with positive heterosis for grain yield and negative heterosis for Striga damage and emerged Striga count involved T1 as a tester. Our study identified six Ex-PVP inbred lines with positive GCA effects for grain yield under Striga infested and non-infested conditions and across multiple test locations. Amongst these, inbred lines HB8229-1 and WIL900-1 also displayed negative GCA effects for emerged Striga count and Striga damage rating. The inbred line HB8229-1 showed positive SCA effects for grain yield with T2, whereas WIL900-1 had positive SCA effects for grain yield with T1. Over 70% of the Ex-PVP inbred lines were consistently assigned to specific heterotic groups using yield-based classifying methods (mean grain yield and SCA effects).ConclusionsThese results could facilitate systematic introgression of the Ex-PVP inbred lines into the existing Striga resistant heterotic groups in IITA. The Ex-PVP inbred lines with positive GCA effects and producing high grain yields in hybrid combinations could be useful parents for enhancing Striga resistance and agronomic performance of tropical maize hybrids.

Genetic diversity of inbred lines in chilli based on phenotypic and genotypic responses against Colletotrichum truncatum

Anthracnose disease in chilli is one of the major problems that has been faced by farmers worldwide. This problem is further aggravated due to the lack of resistant genotypes against Colletotrichum species. It is very important to identify genotypes with resistance genes. Thirty-two inbred lines were challenged with Colletotrichum truncatum using the fruit inoculation method. Genotypic response of four resistant and three susceptible inbred lines against C. truncatum were studied using 14 SSR and two STS markers linked to disease resistance. Four inbred lines, MICH PL CA 2018/3, MICH PL CA 2018/20, MICH PL CA 2018/21 and MICH PL 35 were identified as potential disease-resistant sources against C. truncatum. Three SSR markers were selected for the validation of four resistant inbred lines and three susceptible inbred lines. Molecular markers, HpmsE 051, HpmsE 082 and HpmsE 143 were identified as potential markers to identify genotypes with resistant genes against C. truncatum.

Comparative Transcriptome Analysis of Two Contrasting Maize Inbred Lines Provides Insights on Molecular Mechanisms of Stalk Rot Resistance

Maize stalk rot caused by Fusarium graminearum can lead to severe losses and accumulation of mycotoxins with detrimental effects on livestock health. Because few management strategies are available, the development of resistant varieties is considered the most cost-effective way to control the disease. However, the stalk-tissue-specific mechanisms underlying resistance to F. graminearum remain poorly understood, although it is believed to be strongly influenced by environmental factors. In this study, we performed a temporal transcriptome analysis of two maize inbred lines with contrasting responses to stalk rot using gene expression profiling. We observed differential downregulation of gene expression during the first 2 weeks in a resistant inbred line inoculated with F. graminearum. Time-course gene ontology enrichment analysis suggests that resistance may be caused by a modulation of gene expression associated with redox homeostasis, hormone biosynthesis, cytoskeleton activity, and cell wall remodeling. We validated our gene expression profiling data by measuring the expression of 10 differentially expressed genes using quantitative reverse-transcription PCR. Our analyses also revealed the effect of two environmental conditions with contrasting temperatures and relative humidity on the resistant phenotype and gene expression. This research expands our knowledge of molecular events underlying resistance to stalk rot and the effect of environmental conditions on the disease interaction. Our findings can be exploited for the development of resistant varieties. [Formula: see text] Copyright © 2021 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license .

Transcriptome and Oxylipin Profiling Joint Analysis Reveals Opposite Roles of 9-Oxylipins and Jasmonic Acid in Maize Resistance to Gibberella Stalk Rot

Gibberella stalk rot caused by Fusarium graminearum is one of the devastating diseases of maize that causes significant yield losses worldwide. The molecular mechanisms regulating defense against this pathogen remain poorly understood. According to recent studies, a major oxylipin hormone produced by 13-lipoxygenases (LOX) namely jasmonic acid (JA) has been associated with maize susceptibility to GSR. However, the specific roles of numerous 9-LOX-derived oxylipins in defense against Gibberella stalk rot (GSR) remain unexplained. In this study, we have shown that disruption of a 9-LOX gene, ZmLOX5, resulted in increased susceptibility to GSR, indicating its role in defense. To understand how ZmLOX5 regulates GSR resistance, we conducted transcriptome and oxylipin profiling using a zmlox5-3 mutant and near-isogenic wild type B73, upon infection with F. graminearum. The results showed that JA biosynthetic pathway genes were highly up-regulated, whereas multiple 9-LOX pathway genes were down-regulated in the infected zmlox5-3 mutant. Furthermore, oxylipin profiling of the mutant revealed significantly higher contents of several jasmonates but relatively lower levels of 9-oxylipins in zmlox5-3 upon infection. In contrast, B73 and W438, a more resistant inbred line, displayed relatively lower levels of JAs, but a considerable increase of 9-oxylipins. These results suggest antagonistic interaction between 9-oxylipins and JAs, wherein 9-oxylipins contribute to resistance while JAs facilitate susceptibility to F. graminearum.

Systematic dissection of disease resistance to southern corn rust by bulked-segregant and transcriptome analysis

Southern corn rust (SCR) is a destructive maize disease caused by Puccinia polysora Underw. To investigate the mechanism of SCR resistance in maize, a highly resistant inbred line, L119A, and a highly susceptible line, Lx9801, were subjected to gene mapping and transcriptome analysis. Bulked-segregant analysis coupled with whole-genome sequencing revealed several quantitative trait loci (QTL) on chromosomes 1, 6, 8, and 10. A set of 25 genes, including two coiled-coil nucleotide-binding site leucine-rich repeat (CC-NBS-LRR) genes, were identified as candidate genes for a major-effect QTL on chromosome 10. To investigate the mechanism of SCR resistance in L119A, RNA-seq of P. polysora-inoculated and non-inoculated plants of L119A and Lx9801 was performed. Unexpectedly, the number of differentially expressed genes in inoculated versus non-inoculated L119A plants was about 10 times that of Lx9801, with only 29 common genes identified in both lines, suggesting extensive gene expression changes in the highly resistant but not in the susceptible line. Based on the transcriptome analysis, one of the CC-NBS-LRR candidate genes was confirmed to be upregulated in L119A relative to Lx9801 independently of P. polysora inoculation. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes analyses indicated that transcription factors, as well as genes involved in defense responses and metabolic processes, were dominantly enriched, with the phenylpropanoid biosynthesis pathway most specifically activated. Consistently, accumulation of phenylpropanoid-derived lignin, especially S lignin, was drastically increased in L119A after P. polysora inoculation, but remained unchanged in Lx9801, suggesting a critical role of lignin in SCR resistance. A regulatory network of defense activation and metabolic change in SCR-resistant maize upon P. polysora infection is described.

Mapping of wheat stripe rust resistance gene Yr041133 by BSR-Seq analysis

Puccinia striiformis Westend. f. sp. tritici (Pst) pathotype CYR34 is widely virulent and prevalent in China. Here, we report identification of a strpie rust resistance (Yr) gene, designated Yr041133, in winter wheat line 041133. This line produced a hypersensitive reaction to CYR34 and conferred resistance to 13 other pathotypes. Resistance to CYR34 in line 041133 was controlled by a single dominant gene. Bulked segregant RNA sequencing (BSR-Seq) was performed on a pair of RNA bulks generated by pooling resistant and susceptible recombinant inbred lines. Yr041133 was mapped to a 1.7 cM genetic interval on the chromosome arm 7BL that corresponded to a 0.8 Mb physical interval (608.9–609.7 Mb) in the Chinese Spring reference genome. Based on its unique physical location Yr041133 differred from the other Yr genes on this chromosome arm.

QMrdd2, a novel quantitative resistance locus for maize rough dwarf disease

BackgroundMaize rough dwarf disease (MRDD), a widespread disease caused by four pathogenic viruses, severely reduces maize yield and grain quality. Resistance against MRDD is a complex trait that controlled by many quantitative trait loci (QTL) and easily influenced by environmental conditions. So far, many studies have reported numbers of resistant QTL, however, only one QTL have been cloned, so it is especially important to map and clone more genes that confer resistance to MRDD.ResultsIn the study, a major quantitative trait locus (QTL) qMrdd2, which confers resistance to MRDD, was identified and fine mapped. qMrdd2, located on chromosome 2, was consistently identified in a 15-Mb interval between the simple sequence repeat (SSR) markers D184 and D1600 by using a recombinant inbred line (RIL) population derived from a cross between resistant (“80007”) and susceptible (“80044”) inbred lines. Using a recombinant-derived progeny test strategy, qMrdd2 was delineated to an interval of 577 kb flanked by markers N31 and N42. We further demonstrated that qMrdd2 is an incompletely dominant resistance locus for MRDD that reduced the disease severity index by 20.4%.ConclusionsA major resistance QTL (qMrdd2) have been identified and successfully refined into 577 kb region. This locus will be valuable for improving maize variety resistance to MRDD via marker-assisted selection (MAS).

Identifying suitable tester for evaluating Striga resistant lines using DArTseq markers and agronomic traits.

A desirable tester that elicits greater genetic difference in Striga resistance among test crosses in a breeding program has not been reported. Therefore, this study was conducted to characterize 30 Striga resistant yellow endosperm maize inbred lines and three testers with varying resistance levels to Striga using DArTseq SNP markers and agronomic traits to identify a suitable tester for resistance hybrid breeding. Marker-based and agronomic trait-based genetic distances were estimated for yellow endosperm maize inbred lines and testers with varying resistance levels to Striga. The Marker-based cluster analysis separated the Striga resistant lines and testers into two distinct groups. Although the susceptible tester (T3) was the most distantly related to the 30 Striga resistant inbred lines, it exhibited a narrower range in genetic distance estimates and poor agronomic performance under Striga infestation in crosses with the resistant lines. In contrast, the resistant tester (T2) showed a broader range in genetic distance estimates in pairs with the 30 resistant lines. Also, it formed many high yielding hybrids with desirable traits under parasite pressure. Furthermore, the most significant positive association between agronomic trait-based and marker-based distance estimates (r = 0.389, P = 0.01) was observed when T2 has paired with the Striga resistant maize inbred lines. It thus appears that T2 may be used as a suitable tester to determine the breeding value of lines in hybrid maize resistance breeding programs. T2 was the most suitable tester, with a tolerant tester (T1) as an alternative tester to characterize the combining ability of Striga resistant maize inbred lines. This result can also encourage other breeders to investigate testers relative discriminating ability with varying levels of resistance in hybrid breeding for resistance to diseases, pests, and other parasitic plants.

Breeding Resistance for Post Flowering Stalk rot (Macrophomina phaseolina) in Maize Identification of Resistance against Post Flowering Stalk Rot (Macrophomina phaseolina) in Maize

Maize is one of the most important staple food crops in the World. However, the yields of maize have been affected by various fungal infestations. Post flowering stalk rot is one of the devastating diseases and so, we planned our study to order to identify suitable resistance maize genotypes against post flowering stalk rot (PFSR) complex caused by Macrophomina phaseolina through in-vivo screening and toothpick method for creating artificial epiphytotics. A total of 20 maize inbreds were screened and crossed in Line × Tester mating design (15 × 5) during Kharif 2019, Six resistant inbred lines were identified and generated the 75 F1s (SCHs) at MRC, ARI, Rajendranagar, Hyderabad. All these 20 parents and 75 F1s along with three checks were evaluated by raising the crop in disease sick plot accompanied by toothpick inoculation during Rabi, 2019-20, in a Randomized Block Design with two replications. The field screening of maize genotypes by the standard toothpick method which needs about 40 days for expression of plant drying symptoms due to PFSR and data are possible to record only at the time of crop harvesting using 1-9 rating scale of PFSR for scoring disease severity in-vivo condition by splitting the stem of each plant. As a result, most of the genotypes were exhibited disease reaction varying from resistant (score 2) to moderately resistant (score 5) against M. phaseolina. While studying the genetics of PFSR, we found that interaction of lines and testers were proportionally contributed towards resistant, and degree of dominance is preferably non-additive gene action, it shows that the magnitude of dominance was higher than additive effect indicating that PFSR resistance is largely governed by dominance effect i.e., non additive component is not fixable for resistance. It is also found that the resistant genotypes also exhibited highest significant positive heterosis and combining ability effects (GCA and SCA). A considerable yield reduction in grain yield (10.5 to 28.3%) over checks was observed in susceptible lines. Most of the genotypes were found resistant as the reduction in yield is low. Hybrids developed using such lines exhibited high yields which are promoted for extensive testing to know their stability before release as commercial hybrids.

Screening Luffa germplasm and advanced breeding lines for resistance to Tomato leaf curl New Delhi virus

The two cultivated Luffa species can be severely infected by Tomato leaf curl New Delhi virus (ToLCNDV) with up to 100% yield loss. Here, 52 Luffa genotypes were screened for ToLCNDV resistance after natural field infection. Mean vulnerability index (VI) ranged from 0.00 to 75.33; genotypes IIHR-137 and IIHR-138 had no symptoms (VI 0), 16 genotypes were resistant (VI 0–25), 15 were moderately resistant (VI 26–50), and 19 were moderate to susceptible (VI > 50). Ten of the most resistant genotypes and five susceptible checks were then challenge-inoculated using whiteflies or sap in an insect-proof net house; only IIHR-137 [L. cylindrica (L.) Roem.] was symptomless (VI 0.00), and 3–5% of plants of IIHR-138 [L. cylindrica (L.) Roem.] and IIHR-Sel-1 [L. acutangula (L.) Roxb.] had only mild symptoms; genotype Arka Prasan was most susceptible (VI 80.96). Asymptomatic plants were confirmed as infected using polymerase chain reaction. Susceptible genotypes rapidly developed leaf curling, then a severe mosaic 10 days post-inoculation. The resistant inbred lines identified are good candidates for a breeding program for ToLCNDV-resistant cultivars.

Transcriptome profiling reveals response genes for downy mildew resistance in cucumber.

We discovered a potential defense pathway of cucumber to downy mildew. The signaling that activates the pathways of ROS and lignin accumulation may play an important role in the defense response. Many resistance genes were identified by transcriptome analysis. Downy mildew (DM), caused by Pseudoperonospora cubensis, is one of the most destructive diseases and causes severe yield losses of cucumber. However, the genes and pathways involved in regulating DM resistance were still poorly understood. In our study, we observed that the highly sensitive inbred line 53 (IL53) exhibited more severe disease symptoms than the highly resistant inbred line 51 (IL51) under P. cubensis infection. Furthermore, lignin, limiting the germination and extension of P. cubensis, and H2O2, as a signaling molecule during the resistant process, were both shown to increase, indicating that the signaling that activates these pathways might be responsible for the resistance divergence between IL51 and IL53. Transcriptome analysis, using the resistant and susceptible pools in F2 populations with IL51 and IL53 as parents, showed that a series of differentially expressed genes was involved in multiple functions of defense response: pathogen-associated molecular pattern recognition, signal transduction, reactive oxygen species and lignin accumulation, and transcription regulators. Combining physiological data with transcriptomes, we predicted a potential molecular mechanism of cucumber resistance to DM. Our research provided a foundation for further studies on the mechanism of cucumber resistance to DM.

Genome-Wide Identification and Analysis of CC-NBS-LRR Family in Response to Downy Mildew and Black Rot in Chinese Cabbage.

The nucleotide-binding site–leucine-rich repeat (NBS–LRR) gene family is the largest group of plant disease resistance (R) genes widespread in response to viruses, bacteria, and fungi usually involved in effector triggered immunity (ETI). Forty members of the Chinese cabbage CC type NBS–LRR family were investigated in this study. Gene and protein characteristics, such as distributed locations on chromosomes and gene structures, were explored through comprehensive analysis. CC–NBS–LRR proteins were classified according to their conserved domains, and the phylogenetic relationships of CC–NBS–LRR proteins in Brassica rapa, Arabidopsis thaliana, and Oryza sativa were compared. Moreover, the roles of BrCC–NBS–LRR genes involved in pathogenesis-related defense were studied and analyzed. First, the expression profiles of BrCC–NBS–LRR genes were detected by inoculating with downy mildew and black rot pathogens. Second, sensitive and resistant Chinese cabbage inbred lines were screened by downy mildew and black rot. Finally, the differential expression levels of BrCC–NBS–LRR genes were monitored at 0, 1, 3, 6, 12 and 24 h for short and 0, 3, 5, 7, 10 and 14 days for long inoculation time. Our study provides information on BrCC–NBS–LRR genes for the investigation of the functions and mechanisms of CC-NBS-LRR genes in Chinese cabbage.

Identification of high yielding inbred lines resistant to late wilt disease caused by Harpophora maydis in maize

Diseases are the major constraints in realizing the yield potential of maize. Late wilt disease (LWD) caused by Harpophora maydisis one of the recently reported and widely spreading diseases across the world. Identification of LWD resistant source is an economical and eco-friendly approach. An experiment was conducted to identify LWD resistant inbred lines by subjecting 290 inbred lines to artificial screening. The same set of lines were evaluated for yield and yield attributing traits separately. Inbred lines were subjected to screening by inoculating Harpophora maydis spore suspension to stalks. Disease severity and intensity were recorded in split opened stalks using a 1 - 9 scale. Estimates of yield and yield attributing traits were also recorded and 14 inbred lines with the disease score ≤4 were identified as resistant/tolerant. Two inbred lines namely, 78 and 32589 are both tolerant to LWD and best yielding lines which can serve as potential parents for developing hybrids.

Lessons from 10 years of stakeholder adoption of a soil bioassay for assessing the risk of spinach Fusarium wilt

AbstractAlthough the maritime Pacific Northwest (PNW) is the only region of the United States suitable climatically for spinach seed production, the acidic soils are highly conducive to spinach Fusarium wilt caused by Fusarium oxysporum f. sp. spinaciae. A soil bioassay developed to quantify the risk of spinach Fusarium wilt in fields has been offered to seed growers annually since 2010. Soil sampled from growers' fields each winter was planted with highly susceptible, moderately susceptible, and partially resistant spinach inbred lines, and the plants rated weekly to calculate a Fusarium wilt severity index (FWSI) and the area under the disease progress curve (AUDPC). Results for 147 soils tested from 2010 to 2013 have been published. This study examined results for an additional 248 soils tested from 2014 to 2019 with the bioassay modified to include an option of agricultural limestone amendment to the soils tested. FWSI and AUDPC were affected significantly (p < .001) by the main effects of soil and spinach inbred line, and the interaction of these factors. Correlation analyses showed a range in degree of association of FWSI and AUDPC with spinach seed crop rotation duration and soil properties, depending on the spinach inbred line (r = −.255 to –.267, n = 172 soils with characteristics suitable for correlation analyses). Stepwise regression models for 172 soils with relevant parameters for regression analyses identified spinach seed crop rotation interval, rate of agricultural limestone amendment, soil pH, and soil Fe, Mn, and Zn concentrations as most strongly associated with FWSI and AUDPC. However, the models accounted for ≤33.4% (R2) of the variability in Fusarium wilt risk. The soil bioassay remains a primary tool for spinach seed growers to select fields with low risk of Fusarium wilt.

Characterization of a source of resistance to aflatoxin accumulation in maize

AbstractAflatoxinproduced by the fungus Aspergillus flavus (Link:Fr) can accumulate in maize (Zea mays L.) and poses serious human health and economic concerns, especially in sub‐Saharan Africa. Genetic resistance against A. flavus infection and spread, and subsequent production of aflatoxin, is a key tool for reducing the problem. Some resistant inbred donor lines carry quantitative trait loci (QTL) for resistance that have a sufficiently large phenotypic effect to be used for marker assisted introgression. New sources of resistance, unrelated to previously characterized resistant lines, could carry unique QTL with large phenotypic effect on resistance to complement the previously identified QTL. To this end, CML69, derived from Caribbean Composite germplasm unrelated to previously released resistant lines, was used in QTL mapping to identify and characterize new resistance QTL. Seventeen QTL were identified, although some may be the same genetic region causing QTL identified in more than one environment, indicating that these QTL are stably expressed across environments. These QTL explained 1.8–12.6% each and jointly up to 55% of the phenotypic variation. The largest effect QTL, in particular the QTL in bin 4.08, are most likely the same as has been reported in QTL mapping studies of other resistant maize lines, suggesting both environmental and genetic stability. This stability will be very useful when these QTL are used in maize improvement programs, and single nucleotide polymorphism (SNP) markers linked to these QTL were identified to facilitate this use. CML69, and other lines related to it by pedigree, may make good parents for new aflatoxin resistant hybrids.

Transcriptome profiling analysis reveals distinct resistance response of cucumber leaves infected with powdery mildew.

Powdery mildew is the main disease affecting cucumber cultivation and causes severe economic loss. So far, research on cucumber resistance to powdery mildew has not yielded feasible solutions. This study selected two inbred cucumber lines, XY09-118 (resistant) and Q10 (susceptible) and investigated their responses to powdery mildew infection (harvested 24 and 48h after inoculation) using RNA sequencing. More than 20,000 genes were detected in cucumber leaves both with and without powdery mildew infection at the above two time points. Among these, 5478 genes were identified as differently expressed genes (DEGs) between XY09-118 and Q10. Based on the databases GO and KEGG, the functions of DEGs were analysed. Moreover, the complex regulatory network for powdery mildew resistance was assessed, which involves plant hormone signal transduction, phenylpropanoid biosynthesis, plant-pathogen interaction and the MAPK signalling pathway. In particular, genes encoding WRKY, NAC and TCP were highlighted. In addition, genes involved in plant hormone biosynthesis, metabolism and signal transduction, pathogen resistance and abiotic stress response were analysed. Co-expression analysis indicated that the transcription factors correlated with plant hormone signal pathway and metabolism, defence and abiotic response. The expression of several genes was validated by qRT-PCR. The pathogen resistance regulatory network was identified by comparing resistant and susceptible inbred lines infected with powdery mildew. The transcriptome data provide novel insights into cucumber response to powdery mildew infection and the identified pathogen resistance genes will be highly useful for breeding efforts to enhance the resistance of cucumber to powdery mildew.

Genetics of resistance to Fusarium stalk rot caused by Fusarium verticilloides in maize (Zea mays L.)

Fusarium stalk rot disease (FSR), incited by Fusarium verticilloides, is becoming an important biotic production constraint in many major maize growing areas causing substantial yield losses. The present investigation was conducted to understand the genetics of resistance to FSR through six generation means and variances, as a first step in addressing the problem. Five crosses were developed by crossing four FSR susceptible inbreds (VL1043, VL108867, VL121096 and VL1218) with two resistant inbreds (CM202 and CM212). Six generations of the five crosses (VL1043 × CM212, VL108867 × CM202, VL121096 × CM212, VL1218 × CM202 and VL1218 × CM212) were evaluated through artificial disease inoculation during post rainy season of 2018 and summer, 2019. The scaling tests and joint scaling tests indicated the inadequacy of additive-dominance model and showed the presence of epistatic gene effects in all the five crosses for FSR resistance. The study further revealed the importance of additive, dominance and additive × additive gene effects in the expression of FSR. The magnitude and direction of the additive genetic effects [a], dominance genetic effects [d], magnitudes of additive genetic variance (2A) and dominance genetic variance (2D) varied with the genetic background of the crosses over seasons. Duplicate gene interaction was evident in the inheritance of FSR resistance. Both, additive and non-additive components were found important thus reciprocal recurrent selection would be more effective in obtaining FSR resistant maize inbred lines.