Sources Of Resistance Research Articles

Intra species dissection of phytophthora capsici resistance in black pepper

IntroductionBlack pepper, a financially significant tropical crop, assumes a pivotal role in global agriculture for the major source of specie flavor. Nonetheless, the growth and productivity of black pepper face severe impediments due to the destructive pathogen Phytophthora capsici, ultimately resulting in black pepper blight. The dissecting for the genetic source of pathogen resistance for black pepper is beneficial for its global production. The genetic sources include the variations on gene coding sequences, transcription capabilities and epigenetic modifications, which exerts hierarchy of influences on plant defense against pathogen. However, the understanding of genetic source of disease resistance in black pepper remains limited. MethodsThe wild species Piper flaviflorum (P. flaviflorum, Pf) is known for blight resistance, while the cultivated species P. nigrum is susceptible. To dissecting the genetic sources of pathogen resistance for black pepper, the chromatin modification on H3K4me3 and transcriptome of black pepper species were profiled for genome wide comparative studies, applied with CUT&Tag and RNA sequencing technologies. ResultsThe intraspecies difference between P. flaviflorum and P. nigrum on gene body region led to coding variations on 5137 genes, including 359 gene with biotic stress responses and regulation. P. flaviflorum exhibited a more comprehensive resistance response to Phytophthora capsica in terms of transcriptome features. The pathogen responsive transcribing was significant associated with histone modification mark of H3K4me3 in black pepper. The collective data on variations of sequence, transcription activity and chromatin structure lead to an exclusive jasmonic acid-responsive pathway for disease resistance in P. flaviflorum was revealed. This research provides a comprehensive frame work to identify the fine genetic source for pathogen resistance from wild species of black pepper.

Genetic Independence of Naturally Correlated Variation in Resistance to Endemic and Novel Pathogens.

The emergence of new diseases is an urgent concern, but hosts can also vary in resistance to pathogens that are novel to them, facilitating evolutionary rescue. However, little is known about the genetic source for polymorphic resistance to novel pathogens or its relationship to defences against endemic diseases. With anther-smut disease from wild plant populations, we used selection experiments and genetic analyses to show that resistances to novel and endemic pathogens are genetically independent, despite being positively correlated in nature. Moreover, novel-pathogen resistance presented a much simpler genetic basis and more rapid response to selection. We demonstrate that polymorphic resistance to a newly introduced disease is genetically determined and not an extension of defences against the related endemic pathogen, challenging the conventional view of nonhost resistance.

Embracing AI in Change Management

Abstract: This article discusses how organizations can leverage artificial intelligence (AI) to support rather than hinder change management efforts amid technological transformation. It first establishes a research foundation on common sources of resistance to change, such as job insecurity, lack of understanding, and lack of involvement. The article then presents examples of how AI can augment traditional change management approaches to systematically address each resistance factor. Specifically, AI enhances two-way communication through personalized outreach and question answering. It also enables immersive, dynamic training solutions for ubiquitous, experiential skill development. AI fosters wider participation and feedback while monitoring employee well-being and performance. By addressing causes of resistance at each stage, AI strengthens critical aspects of communication, education, participation, and support to build understanding of changes rather than apathy. The article argues leaders who view AI as an ally in change management will empower their workforce through disruption.

Morpho-biochemical and Molecular Characterization of New Mung Bean [Vigna radiata (L.) Wilczek] Landraces for Cercospora Leaf Spot (CLS) Disease Resistance

Mung bean production is significantly lowered by Cercospora leaf spot (CLS) in various parts of the globe. The most effective way to increase mung bean resilience to this stress is to to identify new CLS resistance sources. Therefore, a panel population of 13 landraces along with 2 susceptible check cultivar, and 11 SSR markers were taken for the present experiment. Correlation analysis suggested significant relationships between the quantitative traits, retained resistance (Banapur local, and Kalampur local), and moderately resistance (Dikhitapada local, and Fakirpur local 1) to CLS. However, total chlorophyll content (TCL) showed strong positive correlations with phenolic content (PHE) (0.984), peroxidase activity (POX) (0.931), and polyphenol oxidase activity (PPO) (0.969). Moreover, PHE (-0.769) and POX (-0.867) were also found negatively correlated with CLS disease reaction. The eigenvalues from the principal component analysis (PCA) indicated the first three principal components collectively explained 84.88% of the total variance. Molecular analysis of the panel population suggested a PIC value range from 0.30 to 0.88, with an average 0.696, and markers such as cp01713 (0.84), cp02181 (0.87), and CEDG147 (0.88) had higher PIC values. Principal coordinate analysis (PCoA) suggested capturing of 69.06% of the total variance by the first three axes, and the landraces were categorizing into three clusters (cluster A, B and C). The genetic distances among the landraces ranged from 0 to 0.608, and phylogenetic tree differentiated them into three major clusters at respective Jaccard’s similarity coefficient i.e., Cluster I (0.68), II (0.75) and III (0.83). Meanwhile, the resistance and moderately resistance landraces were observed in cluster A and cluster B, and in cluster II and cluster III respectively. The resistance landraces obtained from the present study could be used as potential donor for breeding process towards CLS resistance in mung bean.

Ozone-Resistant Bacteria, an Inconvenient Hazard in Water Reclamation: Resistance Mechanism, Propagating Capacity, and Potential Risks.

Resistant bacteria have always been of research interest worldwide. In the urban water system, the increased disinfectant usage gives more chances for undesirable disinfection-resistant bacteria. As the strongest oxidative disinfectant in large-scale water treatment, ozone might select ozone-resistant bacteria (ORB), which, however, have rarely been reported and are inexplicit for their resistant mechanisms and physiological characteristics. In this study, six strains of ORB were screened from a water reclamation plant in Beijing. Three of them (O7, CR19, and O4) were more resistant to ozone than all previously reported ORB or even spores. The ozone consumption capacity of extracellular polymeric substances and cell walls was proved to be the main sources of bacterial ozone resistance, rather than intracellular antioxidant enzymes. The transcriptome results elucidated that strong ORB possessed a combined antioxidant mechanism consisting of the enhanced transcription of protein synthesis, protein export, and polysaccharide export genes (LptF, LptB, NodJ, LivK, LviG, MetQ, MetN, and GltU). This study confirmed the existence of ORB in urban water systems and brought doubts to the idea of a traditional control strategy against chlorine-resistant bacteria. A salient "trade-off" effect between the ozone resistance and propagation ability indicated the weakness and potential control approaches of ORB.

EVALUATION OF COMMERCIAL AND COLLECTION VARIETIES OF BARLEY FOR RESISTANCE TO MAJOR FUNGAL DISEASES IN FIELD CONDITIONS

Barley is an important grain feed crop. A significant amount of it is also used for the production of cereals and beer. Barley ranks fourth in the world in terms of sown area (about million hectares) and grain harvest. The volume of barley crops in the Republic of Kazakhstan is reaching 2 million hectare. In 2021-2023 on the experimental field of the Kazakh Research Institute of Agriculture and Plant Growing conducted a field assessment of the resistance of 216 varieties of winter and spring domestic barley origin to the most common fungal diseases in Kazakhstan Over three years of field research, it was possible to obtain objective data on the reaction to infection with a pathogen. Based on the results of phytopathological assessment, sources of resistance to major fungal diseases were selected among barley varieties. We divided the studied varieties into groups based on the degree of resistance (susceptibility) to the causative agents of fungal diseases, highly resistant (damage rate 0%) not detected, resistant: were discovered 59 varieties of winter and spring barley resistant to fungal diseases.

Marker Assisted Selection (MAS) and It's Application in Vegetable Crop Improvement

Vegetable crop breeding has changed dramatically since the early 1980s due to technological breakthroughs, especially high-throughput sequencing and molecular marker technologies, which have made it possible to sequence many plant genomes, create dense genetic maps, and identify important genes and QTLs linked to traits like yield and disease resistance. ..These instruments have expedited genetic research and breeding programs in crops including tomato, pepper, eggplant, and cucumber, establishing marker-assisted selection (MAS) as a crucial component of contemporary breeding. The use of these technologies has improved crop characteristics significantly and is still influencing the development of vegetable crops in the future. .. For instance, in the majority of private and public tomato breeding projects, major-gene disease resistance traits like verticillium wilt and anthracnose are selected for using PCR-based markers such as SCAR and CAPS.Bs5 and Bs6 have broad-spectrum resistance against Xanthomonas spp. against chilli leaf spot thanks to marker-assisted gene pyramiding. Major QTLs associated to SSR marker CAMS451 on chromosome 1 (from Capsicum accession LS2341) and marker ID10-194305124 on chromosome 10 (from C. annuum BVRC1) have been mapped for resistance to Ralstonia bacterial wilt.Constantly searching crop germplasm for new resistance genes or alleles is essential to diversify the gene pool and stop resistance from breaking down. By using marker-assisted selection (MAS), it is possible to combine genes for resistance to different pathogens or several sources of resistance to the same pathogen to create novel cultivars.

Identification and Validation of Blast Resistance Loci from the Durable Resistance Cultivar Hahng Yi 71

One of the effective strategies for developing blast disease-resistant cultivars to mitigate the yield losses caused by Pyricularia oryzae is the discovery of new genetic resources containing resistance genes. In the present study, a Thai landrace glutinous rice cultivar Hahng Yi 71 (HY71) was used as a durable, broad resistance source to identify QTLs against blast fungus and crossed with a susceptible recurrent parent cultivar RD6, generating 56 BC4F5 lines. The BC4F5 population was tested with six blast isolates, including THL54, THL583, THL658, THL690, THL795, and THL1119, and evaluated with 161 SSR markers to identify resistance regions using modified bulk segregation analysis. Single marker analysis showed 7 markers linked to a resistance reaction located on chromosomes 2, 4, and 5, then tentatively designated as qBL2-RD6, qBL4-HY71, and qBL5-HY71, respectively. Two introgressed lines from the mapping population, KKN97057-7-1-1-2-5-NKI-4-1 and KKN97057-7-1-1-2-5-NKI-5-1, were the qBL5-HY71 donor for introgressing into two rice lines, RGD07123-MS12-MS22-MS1, and RGD07123-MS12-MS22-MS9, which generated two single crosses and a backcross population by marker-assisted selection (MAS) using the linked markers RM39 and RM164. Three improved lines, RGD10021-MS18-B-MS8-MS40, RGD10031-MS-MS3-B-MS9-MS42 (single cross), and RGD11086-MS-MS15-MS10-MS19 (backcross), carrying qBL5-HY71, were tested for their resistance against leaf and neck blast disease by 62 and 8 blast isolates, respectively. The disease screening results showed that qBL5-HY71 was very effective in controlling leaf and neck blast. This study demonstrates the effectiveness of resistance loci qBL5-HY71 from HY71 on chromosome 5 and their linked markers in improving durable blast resistance in rice breeding programs.

Genetic diversity of naked barley accessions from the VIR collection for resistance to powdery mildew in the North-West Region of the Russian Federation

BACKGROUND: Barley is an important grain crop characterized by adaptability to various growing conditions. In recent years close attention has been paid to groups of naked barley which compared to covered barley is more susceptible to the influence of pathogens, that decreases the yield and quality of grain. Powdery mildew is the most harmful diseases of barley (caused by the biotrophic fungus Blumeria graminis (DC.) Golovin ex Speer f. sp. hordei Marchal). The search for new promising sources of resistance to powdery mildew is necessary for barley breeding. AIM: The aim is studying the powdery mildew resistance of naked spring barley accessions from the world collection of VIR and identifying promising sources for economically valuable traits. MATERIALS AND METHODS: In field and laboratory conditions 271 of naked barley accessions of different ecological and geographical origin were studied for powdery mildew resistance and other economically valuable traits (lodging resistance, duration of the vegetative period, yield). The pathogen inoculum for laboratory work was represented by the north-western population of the pathogen. The resistance of barley samples was assessed in the field using the VIR point scale, in the laboratory using the E.B. Mains, S.M. Dietz point scale. The highly effective to powdery mildew resistance allele mlo11 was identified using PCR. RESULTS: The diversity of barley of different origins in resistance to powdery mildew is shown. 16 samples mainly from Europe, local forms from Ethiopia, Japan and India, were found to be resistant in field condition. According to the results of the assessment at the juvenile stage, 1 highly resistant sample k-31058 and 5 moderately resistant (k-20923, k-25801, k-27165, k-29911, k-30231) were identified. The naked forms k-20923 from Germany and k-29911 from Poland were resistant at all stages of plant development. The mlo11 allele was detected in the Arabische variety (k-20923) and heterogeneous pathogen resistance accessions k-20921, k-25793, k-27080, k-29440, k-29820. CONCLUSIONS: As a result of the work the sources of resistance to powdery mildew with a complex of economically valuable traits were identified, which can be involve in the breeding.

Screening of Mungbean Germplasms against Root-Knot Nematode, Melodigyne javanica to Find Out the Source of Resistance

Screening of Mungbean Germplasms against Root-Knot Nematode, Melodigyne javanica to Find Out the Source of Resistance

A GDSL motif-containing lipase modulates Sclerotinia sclerotiorum resistance in Brassica napus.

Sclerotinia stem rot (SSR) caused by Sclerotinia sclerotiorum (Lib.) De Bary is a devastating disease infecting hundreds of plant species. It also restricts the yield, quality, and safe production of rapeseed (Brassica napus) worldwide. However, the lack of resistance sources and genes to S. sclerotiorum has greatly restricted rapeseed SSR-resistance breeding. In this study, a previously identified GDSL motif-containing lipase gene, Brassica napus GDSL LIPASE-LIKE 1 (BnaC07.GLIP1), encoding a protein localized to the intercellular space, was characterized as functioning in plant immunity to S. sclerotiorum. The BnaC07.GLIP1 promoter is S. sclerotiorum-inducible and the expression of BnaC07.GLIP1 is substantially enhanced after S. sclerotiorum infection. Arabidopsis (Arabidopsis thaliana) heterologously expressing and rapeseed lines overexpressing BnaC07.GLIP1 showed enhanced resistance to S. sclerotiorum, whereas RNAi suppression and CRISPR/Cas9 knockout B. napus lines were hyper-susceptible to S. sclerotiorum. Moreover, BnaC07.GLIP1 affected the lipid composition and induced the production of phospholipid molecules, such as phosphatidylethanolamine, phosphatidylcholine and phosphatidic acid, which were correlated with decreased levels of reactive oxygen species (ROS) and enhanced expression of defense-related genes. A B. napus bZIP44 transcription factor specifically binds the CGTCA motif of the BnaC07.GLIP1 promoter to positively regulate its expression. BnbZIP44 responded to S. sclerotiorum infection, and its heterologous expression inhibited ROS accumulation, thereby enhancing S. sclerotiorum resistance in Arabidopsis. Thus, BnaC07.GLIP1 functions downstream of BnbZIP44 and is involved in S. sclerotiorum resistance by modulating the production of phospholipid molecules and ROS homeostasis in B. napus, providing insights into the potential roles and functional mechanisms of BnaC07.GLIP1 in plant immunity and for improving rapeseed SSR disease-resistance breeding.

Isolation and characterization of pathogenic Klebsiella pneumoniae strains from lettuce: a potential source of antibiotic resistance and development of a mathematical model for ANOVA results.

This study aimed to evaluate the prevalence of Klebsiella pneumoniae contamination in raw lettuce from Risalpur, Pakistan, and to analyze the antibiotic susceptibility profiles of the isolated strains. The presence of foodborne pathogens such as K. pneumoniae poses significant public health risks, particularly in regions with suboptimal hygiene practices and improper food handling. Lettuce samples were collected from various sources in Risalpur and screened for K. pneumoniae. Antimicrobial susceptibility testing was performed to evaluate the effectiveness of various antibiotics against the isolated strains. Statistical analyses, including ANOVA and linear regression, were conducted to assess differences in inhibition zones and to predict antibiotic effectiveness based on concentration. The results revealed a significant prevalence of K. pneumoniae in the lettuce samples, highlighting the risks associated with poor hygiene, transportation, storage, and contaminated irrigation water. The isolated strains exhibited high susceptibility to gentamicin but demonstrated notable resistance to doxycycline, vancomycin, and ticarcillin. Multidrug-resistant (MDR) strains were identified. ANOVA showed significant differences in inhibition zones, and the linear regression model predicted a Zone of Inhibition based on antibiotic concentration (β0 = 10.6667, β1 = 0.4556). The identification of MDR strains of K. pneumoniae underscores the urgent need for enhanced antibiotic stewardship and food safety protocols to manage foodborne pathogens. Improved hygiene practices throughout the food production and supply chain are critical to mitigate health risks and address the challenge of growing antibiotic resistance.

Identification and Screening of Leaf Rust Resistance Genes in Wheat Cultivars Through Microsatellites

Wheat is one of the important staple food being grown worldwide and in Pakistan. The wheat rust-causing fungi are very eco-adaptive and evolve rapidly to overcome genetic resistance of wheat varieties. Among all rust-causing fungi, Puccinia triticina causes leaf rust in wheat, and inflicts heavy yield losses. Deploying resistant varieties against leaf rust is the most effective, environmentally-friendly and economic way to control the disease. Therefore, new sources of genetic resistance are continually sought to develop rust resistance in wheat varieties, and nowadays rust resistant varieties have been developed through the accumulation of slow rusting or minor genes that would perform better in fields. Hence, the purpose of this study is to screen a few of the available leaf rust-resistant germplasm in field and evaluate their field response on genetic basis. For this purpose, minor genes were detected through the amplification of simple sequence repeat (SSR) in the selected wheat genotypes through screened primers. Field experiment was conducted. Molecular studies to identify the minor genes were performed. Meteorological data was recorded at the observatory laboratory of the same area. All the epidemiological factors (Temperature (maximum, minimum), Relative Humidity, and Pan Evaporation) showed significant correlation in tested 5 varieties ZARDANA89, ZARLASHTA99, RASKOH 05, BHAKKAR-2000, GA-2002 which were conducive for disease development except rainfall. PCR amplification of Xgwm118, and Xgwm165, showed the range of alleles in 14 genotypes. It was observed that 22 verities showed resistance, 3 were moderately resistant, 3 varieties were moderately susceptible, 8 varieties were moderately susceptible, and 5 varieties were moderately susceptible against leaf rust pathogen.

Rpv10.2: A Haplotype Variant of Locus Rpv10 Enables New Combinations for Pyramiding Downy Mildew Resistance Traits in Grapevine.

In viticulture, pathogens like the oomycete Plasmopara viticola, the causal agent of downy mildew, can cause severe yield loss and require extensive application of plant protection chemicals. Breeders are generating pathogen-resistant varieties exploiting American and Asian wild Vitis germplasm as sources of resistance. Several loci mediating resistance to P. viticola have been identified in the past but may be overcome by specifically adapted strains of the pathogen. Aiming to find and characterize novel loci, a cross population with Vitis amurensis ancestry was investigated searching for resistance-correlated quantitative trait loci (QTL). As a prerequisite, a genetic map was generated by analyzing the 244 F1 individuals derived from a cross of the downy mildew susceptible Vitis vinifera cultivar 'Tigvoasa' and the resistant V. amurensis pBC1 breeding line We 90-06-12. This genetic map is based on the information from 627 molecular markers including 56 simple sequence repeats and 571 rhAmpSeq markers. A phenotypic characterization of the progeny showed a clear segregation of the resistance traits in the F1 population after an experimental inoculation of leaf discs with downy mildew. Combining genetic and phenotypic data, an analysis for QTL revealed a major locus on linkage Group 9 that correlates strongly with the resistance to downy mildew. The locus was mapped to a region of about 80 kb on the PN40024 (12x.V2) grapevine reference genome. This genomic region co-localizes with the formerly identified locus Rpv10 from the grapevine cultivar 'Solaris'. As we found different allele sizes of the locus-linked SSR markers than those characterizing the known Rpv10 locus and differences in the sequence of a candidate gene, it was regarded as a haplotype variant and named Rpv10.2.

Unveiling the intricacies of the rice-Rhizoctonia pathosystem: a comprehensive review of host-pathogen interactions, molecular mechanisms, and strategies for sustainable management

Sheath blight disease in rice, induced by the necrotrophic basidiomycetes Rhizoctonia solani, has emerged as a significant menace to global rice cultivation, especially with the widespread adoption of high-yielding varieties. The pathogen’s capacity to endure unfavorable conditions and its wide host range contribute to the increased challenge for management. The occurrence of sheath blight in rice is intensified when high-yielding semi-dwarf cultivars are employed, coupled with dense planting and the application of substantial amounts of nitrogenous fertilizers. Managing this pathogen is a formidable challenge due to its broad host range, substantial genetic variability, and the absence of satisfactory levels of natural resistance in the existing rice germplasm. Due to the absence of complete resistance sources, the predominant approach for managing sheath blight has been through chemical control methods. It is imperative to explore solutions to combat this pathogen, in order to reduce rice yield losses and safeguard global food security. Developing genetic resistance provides an alternative to the use of potentially harmful chemical fungicides. This review crucially delivers efforts to enhance the understanding of the host–pathogen relationship, which involves identification of gene loci/markers associated with resistance responses, modification of host genome through transgenic approaches, examining the wide host range, epidemiology and its managemental approaches. Recent advancements and current research on the R. solani–rice pathosystem, along with a gap analysis, are presented.

Unlocking Cassava Brown Streak Disease Resistance in Cassava: Insights from Genetic Variability and Combining Ability

Cassava brown streak disease (CBSD) threatens cassava production in sub-Saharan Africa despite the availability of resistant varieties. Extreme environmental factors weaken plant defenses, reducing CBSD resistance. This study examined CBSD inheritance in cassava populations, assessed genetic variability, and identified superior sources of resistance using F1, S1, and half-sib offspring populations derived from resistant sources. The offspring underwent field evaluation at two distinct sites from 2019 to 2021, and the symptom-free genotypes were analyzed using reverse transcription-quantitative polymerase chain reaction (RT-qPCR). Resistance to CBSD was categorized as most resistant, resistant, most tolerant, or tolerant based on symptoms and virus titers. The findings indicated that the resistance to CBSD is highly influenced by genotypes, F1/S1 types, and environmental conditions. An analysis of combining abilities revealed significant general combining abilities (GCAs) for CBSD, cassava mosaic disease (CMD), and traits associated with yield. The heritability estimates for resistance to CBSD varied between 43.4% and 63.2% for foliar symptoms and 14.6% and 57.9% for root necrosis across locations. The inheritance pattern involved a combination of additive and recessive genes with selfed (S1) populations displaying stronger and more effective resistance to the disease. The cassava brown streak virus (CBSV) was highly prevalent, and the Ugandan cassava brown streak virus (UCBSV) was not prevalent. Four genotypes were highly resistant to CBSD and could be key sources of resistance to this disease.

Screening of Tomato (Solanum lycopersicum) Germplasm against Fusarium Wilt and Tomato Leaf Curl Virus Diseases in Naturally Ventilated Polyhouse

Aims: Screening of tomato germplasm against fusarium wilt and tomato leaf curl virus diseases in naturally ventilated polyhouse. Place and Duration of Study: The experiment was conducted during rabi 2020-2021 under naturally ventilated poly house, which located at Center of Excellence, Dr. Y.S.R. Horticultural University, Venkataramannnagudem. Methodology: Total 21 tomato genotypes which included 18 germplasm lines and 3 commercial cultivars as a check (Arkavikas, Polyana and BSS 1006) collected from the HRS, Venkataramannagudem which were screened against major diseases of tomato under naturally ventilated polyhouse and to find out resistance source. Results: Among the 21 genotypes screened against tomato leaf curl virus lowest per cent disease incidence was recorded in VRSL (Venkataramannagudem Solanum lycopersicum) -114 (5.88 %), VRSL-134 (6.54 %) and VRSL-136 (6.86 %). Highest per cent disease incidence was recorded in Arka vikas (17.87 %). Among the 21 genotypes screened lowest per cent disease incidence was recorded in VRSL -40 and VRSL-134 (9.79 %). Highest per cent disease incidence was recorded in A.vikas (32.28 %).

Screening of Gerbera Cultivars against Root-Knot Nematode Meloidogyne incognita

Aims: To find out the source of resistance against root-knot nematode, Meloidogyne incognita in different gerbera cultivars and their evaluation. Study Design: Completely Randomized Design. Place and Duration of Study: Biswanath College of Agriculture, Biswanath Chariali, Assam during rabi season 2023. Methodology: Suckers of six gerbera cultivars were planted in pots and were inoculated with freshly hatched second stage juveniles of M. incognita (1 J2/cm3 soil) fifteen days after planting. Results: Upon observation 2 months after inoculation results showed that three cultivars viz. Pink Melody, Red Seven and Arka Krishika were recorded as susceptible with gall index 3.6, 3.6 and 3.4 respectively. Other three cultivars viz. Orange Sun Brust, Pride of Sikkim and Saffron were recorded as moderately resistant with gall index 3.0. Upon evaluation the cultivar Orange Sun Brut recorded maximum plant growth parameters followed by the cultivar Saffron and minimum plant growth parameters were recorded in the cultivar Pink Melody. Conclusion: From this experiment it is concluded that no one cultivar found to be resistant against root-knot nematode. Three cultivars were found to be moderately resistant and others were susceptible. Moderately resistant cultivars can be planted in nematode infested areas as alternative to susceptible cultivars.

Abstract B086: Patient-derived pancreatic tumor organoids as a tool to evaluate cancer stem cell populations and their role in therapeutic resistance

Abstract Introduction: Pancreatic ductal adenocarcinoma remains one of the most lethal forms of cancer with a five-year survival rate of less than 15%. Regardless of surgery eligibility, most patients receive systemic chemo-radiation therapy, which includes FOLFIRINOX or gemcitabine and nab-paclitaxel, often followed by radiation therapy (RT) with or without 5-FU. Unfortunately, patients’ tumors frequently develop resistance to these therapies, and it’s often unclear as to why. One potential source of resistance and recurrence is cancer stem cell (CSC) perseverance following treatment. Purpose: The purpose of this study was to characterize and treat three patient-derived pancreatic tumor organoids (IDs: 8510, 7800, and 11777) with RT and LD50 doses of relevant chemotherapy drugs to evaluate the treatment response. Furthermore, we sought to examine the impact of individual and combination treatments (i.e., chemo-RT) on the population of CSCs in these organoids. Methods: Organoids were cultured in 3D BME gel domes and grown in an NCI-recommended media formulation. Genome sequencing of 505 relevant genes was performed using a PGDx kit. The dose responses of three organoids to radiation (2-12 Gy) and several chemotherapy approaches were determined via MTT assay. CSCs were identified as those cells staining positive for markers SOX2 and OCT4. The population of CSCs before and after chemotherapy, RT, and combined chemo-RT were evaluated with immunofluorescence, western blotting, and flow cytometry. Results: The data revealed a variation in the responses of tumor organoids to treatments, as demonstrated by different LD50 doses. For instance, tumor organoid 8510 exhibited higher tolerance to 5-FU and FOLFIRINOX treatments compared to organoid 7800. Interestingly, organoid 11777 showed resistance to RT, unlike organoids 8510 and 7800. Clinical genomic sequencing revealed that organoid 11777 showed unique variants of several genes known to be involved with DNA repair, including PIM1, RAD54L, and SLX4, as well as mutations in the ARID1b and TGFBR2 genes. The latter two genes may have implications for radiation resistance and could explain the unique resistance of organoid 11777 to RT. Further investigation is warranted. Regarding the population of CSCs, the immunofluorescence data has confirmed the presence of SOX2 and OCT4 in these organoids, and the immunoblot data showed an upregulation of SOX2 and OCT4 in tumor organoids treated with radiation alone. Flow cytometry analysis confirmed that the percentage of CSCs increased following radiation treatment; however, the CSC population was slightly decreased following treatment with FOLFIRINOX and significantly decreased after combination treatment with FOLFIRINOX and RT. Conclusions: Patient-derived pancreatic tumor organoids can be used as a surrogate to provide molecular insights and therapeutic sensitivity profiles in individual patients. Additionally, while the data suggests a link between CSCs and RT resistance, the combination approach results in a more pronounced inhibition of the CSC population. Citation Format: Zachery L Keepers, Sanjit Roy, William Ryan, Binny Bhandary, Narottam Lamichhane, France Carrier, Ramaswamy K Iyer, Jason K Molitoris, William F Regine, Hem D Shukla. Patient-derived pancreatic tumor organoids as a tool to evaluate cancer stem cell populations and their role in therapeutic resistance [abstract]. In: Proceedings of the AACR Special Conference in Cancer Research: Advances in Pancreatic Cancer Research; 2024 Sep 15-18; Boston, MA. Philadelphia (PA): AACR; Cancer Res 2024;84(17 Suppl_2):Abstract nr B086.

Comparing Apples and Oranges: Advances in Disease Resistance Breeding of Woody Perennial Fruit Crops.

Apple and citrus are perennial tree fruit crops that are vital for nutritional security and agricultural economy and to achieve the Sustainable Development Goals of the United Nations. Apple scab and fire blight, along with Huanglongbing, canker, and tristeza virus, stand out as their most notorious diseases and annually destabilize fruit supply. An environmentally sound approach to managing these diseases is improving tree resistance through breeding and biotechnology. Perennial fruit tree germplasm collections are distributed globally and offer untapped potential as sources of resistance. However, long juvenility, specific pollination and flowering habits, and extensive outcrossing hinder apple and citrus breeding. Advances in breeding approaches include trans- and cis-genesis, genome editing, and rapid-cycle breeding, which, in addition to conventional crossbreeding, can all facilitate accelerated integration of resistance into elite germplasm. In addition, the global pool of available sources of resistance can be characterized by the existing genetic mapping and gene expression studies for accurate discovery of associated loci, genes, and markers to efficiently include these sources in breeding efforts. We discuss and propose a multitude of approaches to overcome the challenges of breeding for resistance in woody perennials and outline a technical path to reduce the time required for the ultimate deployment of disease-resistant cultivars.