Yellow vein clearing disease was first observed on lemon and sour orange trees in Pakistan in 1988 (Catara et al. 1993). It was an important vector-transmitted disease (Onelge et al. 2011) that was then found in India, Turkey, and China. Recently, a putative new member of the genus Mandarivirus, Citrus yellow vein clearing virus (CYVCV), was identified as the putative causal agent of this disease (Loconsole et al. 2012) in Turkey and then in China. However, so far, no data on a virus associated with this disease were available from Pakistan, even though the disease was originally described there. In 2009, a survey was performed to evaluate the occurrence and distribution of citrus viruses and virus-like diseases in Punjab, Pakistan. Field symptoms of distinct yellow vein clearing and leaf distortion were observed on two lemon trees in Faisalabad District. Infected budwood from one symptomatic Eureka lemon (Citrus limon) tree was grafted onto lemons budded on rough lemon rootstock as indicator plants kept in the greenhouse of Citrus Research Institute in China. Six months later, typical yellow vein clearing disease symptoms were visible on lemon seedlings. Total RNA was extracted from symptomatic lemon seedlings using Trizol. One pair of primers, CYV-627F (5′-CAAACAACCAAGCCGCTA-3′) and CYV-1254R (5′-GCCGAACTCTTTCTTTCCG-3′), was used to amplify a ∼600-bp CYVCV specific product by one-step RT-PCR (Invitrogen). The presence of CYVCV was confirmed through sequencing of the 600-bp fragment. Based on the sequences of CYVCV-Turkey, eight primer pairs were designed to amplify overlapping cDNA fragments spanning the CYVCV RNA genome. The 5′ and 3′ termini were determined using the 5′/3′ RACE kit. Each cDNA fragment was cloned with pGEM-T Easy kit and a minimum of five recombinant clones were sequenced. The sequence of the whole genome of CYVCV-Pakistan isolate (KP313241) obtained was 7,529 bp and had 97% identity to the reference sequence from Turkey. CYVCV-Pakistan had the same six open reading frames as CYVCV reported from Turkey. To confirm the virus is still in the field, samples from these two symptomatic trees in Faisalabad District and eight other symptomatic lemon trees with YVC in Sahiwal District were collected in March 2015. RT-PCR tests with primers CYV-627F and CYV-1254R confirmed CYVCV presence in all these samples. To our knowledge, this is the first molecular evidence of CYVCV occurrence in Pakistan, which confirms the strict association of CYVCV infections with lemon trees exhibiting yellow vein clearing disease, as previously reported from Turkey and China. Our finding emphasizes the need for CYVCV indexing in production and distribution of pathogen-free citrus plants in Pakistan.
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