An adaptable, low-cost, and easy-to-operate biological treatment system for pollutant abatement in aquaculture water at the field pond scale needs to be developed. In this study, the pollutant removal capacity of a stable bioreactor for aquaculture wastewater was assessed, and the related mechanism was elucidated via an analysis of the microbial community’s characteristics and functions. The average removal efficiencies of chemical oxygen demand, suspended solids, total nitrogen, and total phosphorus were 40%, 86.22%, 38.62%, and 53.74%, respectively. The effluent quality meets the Requirement for Water Discharge from Freshwater Aquaculture Pond, SC/T9101-2007. The results indicate that the fillers under anaerobic conditions could attract Denitratisoma and unclassified_Rhodocyclaceae, promoting the denitrification reaction. This aligns with the characteristic that total nitrogen in aquaculture sewage mainly exists in the form of nitrate nitrogen. An anaerobic atmosphere helps degrade organic contaminants at liquid interfaces and remove nitrogen in the solid phase. The fillers under anaerobic conditions could attract Bacteroidota and promote the production of polysaccharides to form biofilms, which may be associated with phosphorus removal. The results indicate that the anaerobic stage can promote the formation of biofilm on the fillers to remove pollutants, thus achieving higher aquaculture sewage treatment efficiency.
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