Related Species Research Articles

Levels and Profile of Tetrodotoxins in Spawning Cephalothrix mokievskii (Palaeonemertea, Nemertea): Assessing the Potential Toxic Pressure on Marine Ecosystems.

The ribbon worms of the closely related species Cephalothrix simula, Cephalothrix cf. simula, and Cephalothrix mokievskii, representing the C. simula species complex, possess high concentrations of tetrodotoxin (TTX) and its analogues in all developmental stages from eggs to adults. It has recently been suggested that the eggs and larvae of these animals can be a source of tetrodotoxins (TTXs) for other aquatic organisms. In the current study, TTXs in mature and post-spawning individuals and in the eggs of C. mokievskii were identified using high-performance liquid chromatography-tandem mass spectrometry. For the first time, the quantity and profile of TTXs that these nemerteans released into the environment during spawning were estimated. We showed that the spawning C. mokievskii females released significant amounts of TTX and 5,6,11-trideoxyTTX with their eggs; these levels were sufficient for the potential toxification of marine bioresources. The issues surrounding the monitoring of TTXs in commercial marine animals, and collecting at the sites of the spawning of nemerteans from the C. simula species complex, are discussed.

Expression Analysis and Functional Validation of DcTPSb1 in Terpene Synthesis of Dendrobium chrysotoxum.

Terpenes are critical components of the floral fragrance component in Dendrobium chrysotoxum, synthesized by terpene synthase (TPS). Analysis of the D. chrysotoxum genome and transcriptional data revealed that the gene DcTPSb1 was significantly up-regulated during flowering periods, showing a strong correlation with the accumulation of aromatic monoterpenes in the floral components of Dendrobium chrysotoxum. Consequently, the DcTPSb1 gene was selected for further analysis. DcTPSb1 exhibited elevated expression levels in flowers among four organs (roots, stems, leaves, flowers) of D. chrysotoxum, with the highest expression observed during the blooming phase, which aligned with the accumulation of volatile terpenes during flowering. DcTPSb1, located in the chloroplasts, was identified as a member of the TPS-b subfamily associated with monoterpenes synthesis, showing close phylogenetic relationships with homologous proteins in related plant species. An analysis of the promoter region of DcTPSb1 indicated that it may be regulated by methyl jasmonate (MeJA) responsiveness. Functionally, DcTPSb1 was shown to catalyze the conversion of geranyl diphosphate (GPP) to linalool, ocimene, and (-)-α-pinitol in vitro. Overexpression of DcTPSb1 in tobacco resulted in a significant increase in terpenoid release during the blooming stage; however, the up-regulated substances did not include their catalytic products. The classification of DcTPSb1 as a terpene synthase capable of producing multiple products provides valuable insights into the complex biosynthesis of terpenes in orchids. These findings enhance our understanding of the functional diversity of DcTPSb1 and the processes involved in terpene biosynthesis in orchids.

Complete Mitochondrial Genome of Niphon spinosus (Perciformes: Niphonidae): Genome Characterization and Phylogenetic Analysis.

The species Niphon spinosus (Cuvier, 1829) is the only representative of the family Niphonidae and the genus Niphon, and its taxonomic history is complicated; it is still unclear in a phylogenetic sense. In this study, we report the complete mitochondrial genome of N. spinosus (OP391482), which was determined to be 16,503 bp long with biased A + T contents (53.8%) using next-generation technology. The typical set of 13 protein-coding genes (PCGs), 2 rRNA genes, 22 tRNA genes, and one control region (D-loop) are included in the mitochondrial genome. The H-strand encoded 28 genes (14 tRNA, 2 rRNA, and 12 PCGs), and D-loop, whereas the L-strand encoded the remaining 9 genes (8 tRNA and ND6). Its nucleotide composition, gene arrangement, codon usage patterns, and tRNA secondary structures are identical with other members of the Percoidei suborder. Furthermore, we reconstructed phylogenetic trees based on the 13 PCGs. The resulting phylogenetic trees showed N. spinosus placing as a separate lineage within the family Niphonidae, its close relationship to Trachinus draco (Trachinidae), and the clustering of major subfamilies like Luciopercinae and Percinae of the Percoidei suborder. These findings will contribute to future studies on the evolutionary history, population genetics, molecular taxonomy, and phylogeny of N. spinosus and related species.

A novel method of species-specific molecular target mining and accurate discrimination of Bacillus cereus sensu lato.

Bacillus cereus, a member of the Bacillus cereus sensu lato (B. cereus s.l.), is widely distributed in nature and can contaminate a variety of foods, leading to foodborne illnesses and substantial losses in the food industry. Although culture-based methods remain the gold standard for identifying B. cereus due to their high sensitivity under specific conditions, they are often complex and labor-intensive to implement. Furthermore, the high genetic similarity among certain members of the B. cereus s.l. makes it challenging to identify species-specific molecular targets, hindering the rapid and accurate differentiation of these bacteria. In this study, we introduce a novel method, comparative analysis based on whole genome slices (CAWGS), combined with the Basic Local Alignment Search Tool (BLAST) for efficient molecular target mining. Using CAWGS-BLAST and pan-genome analysis, we successfully identified new molecular targets for B. cereus, Bacillus thuringiensis, emetic B. cereus, Bacillus anthracis, Bacillus mycoides, Bacillus weihenstephanensis, and Bacillus megaterium. Based on these newly discovered targets, we developed a PCR-CRISPR/Cas12a method for detecting B. cereus s.l. and related species. Our research not only provides a rapid and accurate approach for discriminating B. cereus s.l. and related species, but also offers a universal and valuable reference for detecting foodborne pathogens, especially those with highly similar phenotypic and genetic characteristics.

Anatomical variations in Eurasian wolf (Canis lupus lupus) (Carnivora: Canidae) of the salivary glands: A histological and histochemical investigation.

The study involved a gross anatomical description of the parotid gland, mandibular gland, monostomatic sublingual gland, polystomatic sublingual gland, and zygomatic gland in 12 adult Eurasian wolves (Canis lupus lupus) (wild free-ranging individuals and their zoo counterparts), including their morphometry and microscopic evaluation using hematoxylin & eosin, mucicarmine, azan trichrome, PAS, AB pH 1.0, AB pH 2.5; AB pH 2.5/PAS, and HDI stainings. Topographically, the salivary glands were located similarly to those of other terrestrial Carnivora. The parotid gland in all wolves had a shape similar to a trapezoid (four angles). The parotid duct opened onto the fourth upper premolar (P4). The parotid gland was a branched alveolar complex that produced serous secretion. In captive specimens, the mandibular gland was a complex branched tubular gland producing mucous secretion, while in free-ranging wolves it was a branched tubuloalveolar gland producing mucoserous secretion. The monostomatic sublingual gland in free-ranging wolves was a complex branched tubuloalveolar gland that produced seromucous secretion, while in captive wolves, it revealed a mucoserous secretion character. The polystomatic sublingual gland consisted of several independent packets (from 6-7 to 7-8) and was a complex branched tubuloalveolar gland with seromucous secretion. The zygomatic duct opened onto the last upper molar tooth (M3), and this gland was a complex branched tubular gland producing mucous secretion. The anatomical and histological similarities between the salivary glands of the oral cavity in captive and free-ranging wolves, compared to other terrestrial carnivores, provide valuable insights for veterinary treatments and understanding pathological conditions. These findings emphasize the need for further research on diverse populations of wolves and related species within the Canidae family to better understand the influence of diet on salivary gland morphology.

Development and characterization of a complete set of monosomic alien addition lines from Raphanus sativus in Brassica oleracea.

A complete set of monosomic alien addition lines of Radish-Brassica oleracea exhibiting extensive variations was generated and well characterized for their chromosome behaviors and phenotypic characteristics. Monosomic alien addition lines (MAALs) are developed through interspecific hybridization, where an alien chromosome from a relative species is introduced into the genome of the recipient plant, serving as valuable genetic resources. In this study, an allotetraploid Raphanobrassica (RRCC, 2n = 36) was created from the interspecific hybridization between radish (Raphanus sativus, RR, 2n = 18) and Brassica oleracea (CC, 2n = 18). Subsequently, this Raphanobrassica was repeatedly backcrossed with radish to generate an aneuploid population. The identification of a complete set of MAALs (RR + 1C1-9, 2n = 19) was achieved using PCR with C chromosome-specific markers and fluorescence in situ hybridization, revealing extensive morphological variations, particularly in the shape and size of the fleshy root. A complete set of MAALs was achieved with only one chromosome from 1 to 9 linkage groups of the C genome. Compared with parental radish, most of the MAALs showed a noticeable delay in root swelling, particularly the RR-C6 that did not exhibit obvious root swelling throughout its entire growth stage. Cytological analysis indicated that the MAAL lines containing chromosome C8 exhibited the highest frequency of intergenomic chromosome pairings. Additionally, some introgressive radish lines derived from MAALs displayed a preference toward the donor B. oleracea or over-parent heterosis for some certain nutritional components. Overall, these MAALs serve as valuable germplasm for the genetic enhancement of radish and provide insights into the interactions between the R genome and C chromosomes.

Thrips dynamics in Allium crops: Unraveling the role of reproductive mode and weather variables in Thrips tabaci population development.

Thrips tabaci is the main thrips species affecting onion and related species. It is a cryptic species complex comprising three phylogenetic groups characterized by different reproductive modes (thelytoky or arrhenotoky) and host plant specialization. Thrips tabaci populations vary widely in genetic diversity, raising questions about the factor(s) that drive this diversity. We investigated the genetic diversity, reproductive mode, and heteroplasmy frequency in T. tabaci populations from different Allium spp fields in six locations in the Netherlands in 2021 and at two locations from the North and South of Uruguay over three years to unravel how the diversity is structured in the populations and if changes can be associated with weather variables. The thrips populations from each location studied were characterized by sequencing 33 individuals per sampling using the cytochrome oxidase subunit I (COI) gene. The reproductive mode was determined using specific primers and a phylogenetic analysis. Daily data for the weather variables was obtained from agrometeorological experimental stations located in the Uruguayan sampled crop fields. The diversity, reproductive mode, and heteroplasmy of T. tabaci populations in onion crops exhibited significant year-to-year variation depending on the location. Changes in the relative frequency of each reproductive mode in populations are associated with weather variables: precipitation, temperature, number of frosts, and relative humidity. Heteroplasmy frequency was associated with the same weather variables except temperature. In Uruguay and the Netherlands, T. tabaci thelytokous haplotype H1 was the most common, showing different heteroplasmy levels within and between the populations. In the field populations, a high frequency of heteroplasmic H1 individuals was associated with low precipitation, while all H1 individuals were also associated with high temperature and high relative humidity. In Uruguay, heteroplasmy was associated with arrhenotokous T. tabaci haplotypes, which were highly common in the North, pointing at specific adaptations leading to a faster population build-up. All this information may be instrumental for designing more precise integrated pest management techniques in both conventional and organic production.

A Review on zerumbone and its semisynthetic Analogs: Synthesis and Implications in Medicinal chemistry.

Natural products and their semisynthetic analogs have long standing history in generating and identifying lead and drug candidates for various therapeutic areas. Zerumbone 1, a unique 11 membered monocyclic sesquiterpene natural product is isolated from Zingiber zerumbet (L. Smith) and related species. The presence of divinyl ketone along with an isolated double bond with all trans double bond geometries, provides great opportunities to create unique and complex molecular scaffolds. Various chemistries to synthesize semisynthetic analogs and their biological properties are discussed in detail. Broad spectrum biological activities and identified potential targets for zerumbone could potentially lead to the generation of lead compounds for therapeutic applications especially for cancer.

Strain-specific virulence of Perkinsus marinus and related species in Eastern oysters: A comprehensive analysis of immune responses and mortality.

In this study, we investigated the variability in virulence among different strains of Perkinsus marinus and other Perkinsus species in Eastern oysters (Crassostrea virginica), examining the immune responses and mortality rates of oysters exposed to different Perkinsus isolates. Compared with the other assessed strains, P. marinus strain ATCC 50787 was found to induce significantly (P<0.05) higher levels of reactive oxygen species, nitric oxide, and necrosis in oyster hemocytes. Perkinsus chesapeaki (ATCC PRA-65) elicited strong immune responses and high mortality in Eastern oysters at rates similar to those induced by the most virulent P. marinus strain. In contrast, P. olseni and P. honshuensis induced low levels of immune response and mortality. In vivo survival assays confirmed that strains inducing high immune responses in vitro also caused high mortalities in oysters. Our findings in this study highlight the importance of considering strain-specific virulence when studying Perkinsus infections in oysters. These findings have implications for understanding host-parasite interactions and managing Perkinsus-related diseases in oyster populations, particularly from the perspectives of aquaculture and conservation.

The Complete Chloroplast Genome of Erythrina variegata L. (Papilionoideae, Fabaceae).

Erythrina variegata L. 1754, a thorny deciduous tree of Fabaceae, contains various chemical compounds such as alkaloids, flavonoids, and triterpenoids and exhibits anti-depressant, anti-inflammatory, and antidiabetic activities. However, genomic data of E. variegata are limited. In this study, the complete chloroplast genome of E. variegata was sequenced and characterized using Illumina sequencing platform. The chloroplast genome of E. variegata was 152,351 bp in length and consisted of a large single copy (82,907 bp), a small single copy (26,309 bp), and two inverted repeat regions (16,826 bp). There were 79 protein-coding genes, 30 transfer RNA genes, and four ribosomal RNA genes. Comparative analysis revealed high conservation of chloroplast genomes among Erythrina species regarding genome size, structure, and gene content. The phylogenetic study also indicated a close relationship between E. variagata and E. sanwicensis. This study provides initial plastome data for further genomic studies examining E. variegata and related species in Fabaceae.

A cost-effective oligo-based barcode system for chromosome identification in longan and lychee.

Oligonucleotide (Oligo)-based fluorescence in situ hybridization (FISH) represents a highly effective methodology for identifying plant chromosomes. Longan is a commercially significant fruit species, yet lacking basic chromosomal markers has hindered its cytogenetic research. In this study, we developed a cost-effective oligo-based system for distinguishing chromosomes of longan (Dimocarpus longan Lour., 2n = 2x = 30). For this system, each synthesized oligo contained two chromosome-specific sequences that spanned a distance of over 200kb, and a PCR-based flexible amplification method coupled with nested primers was used for probe labeling. The use of these oligo-based barcodes enabled the marking of 36 chromosomal regions, which allowed for the unambiguous distinction of all 15 chromosomes in both longan and lychee (Litchi chinensis Sonn., 2n = 2x = 30) species. Based on the identification of individual chromosomes, we constructed karyotypes and detected genome assembly errors involving the 35S ribosomal RNA gene (35S rDNA) in longan and lychee. Developing oligo-based barcodes offers considerable promise for advancing cytogenetic research in longan, lychee, and their related species. Furthermore, this cost-effective synthesis system can be referred to the development of new oligo libraries among other species.

Niche-related processes explain phylogenetic structure of acoustic bird communities in Mexico.

Acoustic communities are acoustically active species aggregations within a habitat, where vocal interactions between species can interfere their communication. The acoustic adaptation hypothesis (AAH) explains how the habitat favors the transmission of acoustic signals. To understand how bird acoustic communities are structured, we tested the effect of habitat structure on the phylogenetic structure, and on the phylogenetic and vocal diversity of acoustic communities in a semi-arid zone of Mexico. From autonomous recordings in three types of vegetation (crop fields, tetecheras, and mesquiteras), which differ in terms of complexity and canopy openness, we evaluated sound attenuation, and estimated metrics of phylogenetic structure and diversity as well as acoustic diversity with the use of two indices. Mesquiteras showed greater vegetation density, more attenuation, more vocal diversity, as well as a phylogenetic structure that tended towards overdispersion, in contrast to crop fields that showed less vegetation density, less attenuation, less vocal diversity and more phylogenetic relatedness, while tetecheras showed intermediate patterns. Phylogenetic structure was explained by vegetation density and excess attenuation. The higher vocal diversity, phylogenetic structure tended towards overdispersion. These results suggest a role for environmental filters in the crop fields, where more closely related species with similar vocal characteristics coexist (supporting AAH), and probably competitive exclusion in the mesquiteras, where more distantly related species coexist, promoting vocal diversity. This study offers information about the influence of habitat on the acoustic community structure, which could inform our understanding of the distribution of species from acoustic perspective.

Sedumsimingshanense (Crassulaceae), a new species from Zhejiang, East China.

In this paper, Sedumsimingshanense sp. nov. is described as a new species based on morphological and molecular analyses, and its taxonomic relationships are discussed. Morphological analysis indicates S.simingshanense should be classified in the genus Sedumsect.Sedum and is distinct from the related species S.xunvense and S.formosanum in the morphology of its solitary, light green and smooth stems, flattened leaves, larger, obovate and spurless sepals, yellow anthers, 22-30 ovules per carpel, oblique follicles, and its habitat on shaded slopes or rocks. Phylogenetic analysis of sequences of the nuclear ribosomal internal transcribed spacer (ITS) also demonstrates that S.simingshanense has a highest similarity of only 97.22% with any known species and S.formosanum is the closest extant relative of the new species.

Urbanisation Does Not Affect Allometric Relationships in a Widespread Amazonian Dung Beetle Species

ABSTRACTThe environmental pressures promoted by urban ecosystems can play a pivotal role in the sexual attributes of native species that persist in cities. Dung beetles' body size and cephalic appendages are determinant for mating success and couple acceptance, directly affecting individual fitness. The objective of this study was to test how different levels of urbanisation affect tubercle length–body size allometry of Dichotomius boreus individuals. Dung beetles were sampled in three habitats: city core, city outskirts and rural sites. Individuals had their body and tubercle lengths measured to assess their allometric relationships. There was a hyperallometric relationship between body size and tubercle length, which did not differ between sexes according to their habitat type. Moreover, there were no differences in allometric slopes between habitats in neither sex. The results of our study could suggest that the sexual selective force for the expression of different tubercle lengths in males and females is similar and responded similarly in the different studied habitats of the urban landscape of this study. Future studies encompassing Dichotomius dung beetles would be necessary to establish the evolution of allometric relationships in this clade and its relation to the intra‐ and interspecific interactions.

Biophysical and biochemical evidence for the role of acetate kinases (AckAs) in an acetogenic pathway in pathogenic spirochetes.

Unraveling the metabolism of Treponema pallidum is a key component to understanding the pathogenesis of the human disease that it causes, syphilis. For decades, it was assumed that glucose was the sole carbon/energy source for this parasitic spirochete. But the lack of citric-acid-cycle enzymes suggested that alternative sources could be utilized, especially in microaerophilic host environments where glycolysis should not be robust. Recent bioinformatic, biophysical, and biochemical evidence supports the existence of an acetogenic energy-conservation pathway in T. pallidum and related treponemal species. In this hypothetical pathway, exogenous D-lactate can be utilized by the bacterium as an alternative energy source. Herein, we examined the final enzyme in this pathway, acetate kinase (named TP0476), which ostensibly catalyzes the generation of ATP from ADP and acetyl-phosphate. We found that TP0476 was able to carry out this reaction, but the protein was not suitable for biophysical and structural characterization. We thus performed additional studies on the homologous enzyme (75% amino-acid sequence identity) from the oral pathogen Treponema vincentii, TV0924. This protein also exhibited acetate kinase activity, and it was amenable to structural and biophysical studies. We established that the enzyme exists as a dimer in solution, and then determined its crystal structure at a resolution of 1.36 Å, showing that the protein has a similar fold to other known acetate kinases. Mutation of residues in the putative active site drastically altered its enzymatic activity. A second crystal structure of TV0924 in the presence of AMP (at 1.3 Å resolution) provided insight into the binding of one of the enzyme's substrates. On balance, this evidence strongly supported the roles of TP0476 and TV0924 as acetate kinases, reinforcing the hypothesis of an acetogenic pathway in pathogenic treponemes.

Malus sieversii: a historical, genetic, and conservational perspective of the primary progenitor species of domesticated apples.

Apples are one of the most valued tree fruit crops around the world. Currently, a few highly popular and economically successful apple cultivars dominate the commercial production and serve as main genetic contributors to the development of new apple cultivars. This limited level of genetic diversity grown as a clonally propagated monoculture renders the apple industry vulnerable to the wide range of weather events, pests, and pathogens. Wild apple species are an excellent source of beneficial alleles for the wide range of biotic and abiotic stressors challenging apple production. However, the biological barriers of breeding with small-fruited wild apples greatly limit their use. Using a closely related wild species of apple such as Malus sieversii can improve the efficiency of breeding efforts and broaden the base of available genetics. M. sieversii is the main progenitor of the domesticated apple, native to Central Asia. The similarity of fruit morphology to domesticated apples and resistances to abiotic and biotic stresses makes it appealing for apple breeding programs. However, this important species is under threat of extinction in its native range. Preserving the wild apple forests in Central Asia is vital for ensuring the sustainable protection of this important genetic resource. The insufficient awareness about the complete range of challenges and opportunities associated with M. sieversii hinders the maximization of its potential benefits. This review aims to provide comprehensive information on the cultural and historical context of M. sieversii, current genetic knowledge for breeding, and the conservation challenges of wild apple forests.

Demystifying the functions of the mitochondrial ORFan proteins in bivalves with doubly uniparental inheritance.

Strict maternal inheritance of mitochondria is known to be the rule in animals, but over 100 species across six orders of bivalves possess doubly uniparental inheritance (DUI) of mitochondria. Under DUI, two distinctive sex-specific mitogenomes coexist. In marine and freshwater mussels, each mitogenome has an additional protein-coding gene, called female- and male-specific open reading frame or forf and morf, respectively. The function(s) of the associated FORF and MORF proteins remain unknown. Herein, we show that these proteins present similar tissue expression patterns in two distantly related DUI species: MORF was only expressed in male gonads, whereas FORF was expressed in all tissues of both sexes in the marine mussel Mytilus edulis and the freshwater mussel Venustaconcha ellipsiformis. Moreover, MORF was only expressed during the reproductive season, while FORF presented no clear seasonality pattern in M. edulis. Immunocytochemistry revealed the presence of both proteins in mitochondria and acrosomes of late spermatids and mature sperm. We hypothesize that MORF has a key function in spermatogenesis, while FORF has a more general function in both sexes. We also propose that both proteins may be involved in the fertilization process. The involvement of MORF in paternal mitochondrial transmission is also discussed.

Cuticular composition: An alternative taxonomic approach to differentiate between Argas arboreus and Argas persicus ticks (Acari: Argasidae)

Argas arboreus and A. persicus are blood sucking ectoparasites on domestic birds in Egypt. They cause anemia in birds, in addition to transmitting a variety of pathogens that leads to economical loss in the poultry industry. It is difficult for non-taxonomists to differentiate between these species because of minor morphological characters. Therefore, it is very important to identify tick species for developing a suitable strategy to reduce risks to poultry wealth. This study characterized the female cuticular hydrocarbons of two Argas species using gas chromatography-mass spectrometry. Sixty different hydrocarbons were exclusively identified in A. arboureus, whereas only 51 in A. persicus. Some of the hydrocarbon compounds were stage-specific ones that differentiate between two species. Others shared between all feeding stages of both species that improved they are closely related ones. Genetic variability recorded its maximum value between unfed stages of the two species, and similarity reached only 25%. The present study provides the first chemotaxonomic data to differentiate between two closely related Argas species according to their cuticular hydrocarbons. Therefore, hydrocarbon composition seems to be a promising tool available as a taxonomic character, in addition improved that feeding stage was the susceptible one to be controlled.

Analytical characterization of aberrant trisulfide bond formation in therapeutic proteins and their impact on product quality.

Post translational modifications (PTMs) of proteins play an integral role in maintaining the overall structure and function of proteins including their proper folding, binding, and potency. However, not all PTMs play a positive role in protein drugs as some can lead to product-related impurities that negatively impact protein function. One example of a PTM is trisulfide formation, which appears as a product related species in multiple biologic drug products. The impacts of trisulfide formation on protein structure, stability, potency, and safety remains under investigation. Herein, we investigated and report the impact of aberrant trisulfides on erythropoietin (EPO) and somatropin (growth hormone/GH) therapeutic proteins. Utilizing LC-MS we show that one EPO product contains measurable basal levels of trisulfide bonds in its formulation and exposure to H2S induced aberrant trisulfides in all products investigated. We report that exposure to H2S produces moderate effects on protein stability via thermal melting monitored by circular dichroism, protein purity utilizing size exclusion chromatography, and particle content using micro-flow imaging. No changes were observed in protein folding via circular dichroism, immunogenicity screening via a THP1-blue assay, or receptor binding activity via biolayer interferometry. Together, these data provide evidence on the effects of aberrant trisulfide formation on overall product quality.

Regulation of important natural products biosynthesis by WRKY transcription factors in plants.

Plants produce abundant natural products, among which are species-specific and diversified secondary metabolites that are essential for growth and development, as well as adaptation to adversity and ecology. Moreover, these secondary metabolites are extensively utilized in pharmaceuticals, fragrances, industrial materials, and more. WRKY transcription factors (TFs), as a family of TFs unique to plants, have significant functions in many plant life activities. Especially in recent years, their role in the field of secondary metabolite biosynthesis regulation has received much attention. However, very little comprehensive summarization has been done to review their research progress. The purpose of this work is not only to provide valuable insights into the regulation of WRKY TFs over metabolic pathways through compiling the WRKY TFs involved in these processes, but also to offer research directions for WRKY TFs by summarizing the regulatory modes of WRKY TFs in the biosynthesis of secondary metabolites, thereby increasing the yield of valuable natural products in the future. Secondary metabolites can be categorized into three major classes-terpenoids, phenolic compounds, and nitrogen-containing compounds-based on their structural characteristics and biosynthetic pathways, and further subdivided into numerous subclasses. We review in detail the research progressregardingthe regulatory roles of WRKY TFs in plant secondary metabolitebiosynthesis and summarize more than 40 major related species. Additionally, we have presented the concepts of action modes of WRKY TFs involved in metabolic pathways, including direct regulation, indirect regulation, co-regulation, and self-regulation. It is helpful for others to investigate the molecular mechanisms of TF-mediated regulation. Furthermore, regarding future research prospects, we believe that research in this area lays the foundation for increasing the yield of important plant-derived natural products by molecular breeding, generating significant economic and social benefits.