Reduction in river discharge and sediment load has left deltaic lobes in the world’s many river deltas starving, but knowledge of how the subaqueous topography of these abandoned subdeltas responds to environmental changes is limited. In this study, we aimed to determine the long-term dynamics of the subaqueous seabed of abandoned delta lobes to advance current knowledge. As a case study, we selected an abandoned subdelta on the Yellow River Delta of the Bohai Sea, China, for which three-decade long (1984–2017) bathymetric data and long-term river discharge and sediment load records are available. We analyzed the seafloor surface change and quantified the void space from the sea water surface to the seafloor. In addition, we surveyed the seafloor surface with an M80 unmanned surface vehicle carrying a multibeam echo sounder system (MBES) in 2019 to obtain high-resolution microtopography information. We found that a net volume of 5.3 × 108 m3 of sediment was eroded from the study seabed within an area of 3.6 × 108 m2 during 1984–2017. This volumetric quantity is equivalent to 6.89 billion metric tons of sediment, assuming a bulk density of 1.3 t/m3 for the seabed sediment. The seabed erosion from 0 to −5 m, from −5 to −10 m, and below −10 m has showed a similar increasing trend over the past 33 years. These findings suggest that seabed erosion in this abandoned subdelta will very likely continue, and that other abandoned delta lobes in the world may have been experiencing similar seabed erosion due to the interruption of the sediment supply and sea level rise. It is not clear if the seabed erosion of abandoned delta lobes would have any effect on the stability of the coastal shoreline and continental shelf.