Reconstruction Algorithm Research Articles

Optical property discrepancies found between healthy and unhealthy skin cells using digital holographic microscopy with three wavelengths

Cancer and other health disorders can be differentiated by changes in cell optical properties such as their refractive index, thickness, and topology (height and width). Here, we employ three wavelengths simultaneously in digital holographic microscopy (3λ-DHM) to visualize the whole cell topology as 3D images through a numerical reconstruction algorithm applied to a hologram. By identifying the cell state and the changes in its optical properties, it is possible to discern between healthy and unhealthy cells. The simultaneous use of three wavelengths provides a rapid and straightforward quantitative reconstruction of the whole cell without the need for an unwrapping algorithm. This is a benefit over traditional methods, which often require complicated procedures. The performance of the approach was first validated in a known sample, a silicon dioxide thin film, where we were able to corroborate its refractive index with the values reported in the literature. Then the method was applied to fixed skin cells finding a refractive index of 1.3443 for healthy cells and 1.3246 for cells found in tumor tissue. We discuss and highlight differences based on the refractive index to demonstrate that the employed process can provide reliable information to distinguish characteristics between healthy and unhealthy cells.

Optical system characterization in Fourier ptychographic microscopy

Fourier ptychographic microscopy (FPM) is a recent technique to overcome the diffraction limit of a low numerical aperture (NA) objective lens by algorithmic post-processing of several low-resolution images. It can increase the space-bandwidth product of an optical system by computationally combining images captured under different illumination conditions. Vignetting determines the spatial extent of the bright and dark regions in the captured images. State-of-the-art analyses treat vignetting as a nuisance that needs to be reduced or excluded from algorithmic consideration using ad hoc decision rules. In contrast, this work investigates vignetting effects as a tool to infer a range of properties of the optical system. Generally, the goal of the FPM reconstruction algorithm is to achieve results that closely resemble the actual specimen at the highest resolution possible. However, as the optimization process does not necessarily guarantee a unique solution, we identify system properties that support alignment between computational predictions and empirical observations, potentially leading to a more accurate and reliable analysis. To achieve this, we characterize the individual system components of the experimental setup and compare experimental data to both, geometrical and wave optical simulations. We demonstrate that using vignetting as an analytical tool enables the modeling of the geometric and coherence properties of the optical system as evidenced by the good agreement between our simulation and experiment.

Optimizing Parameters for Enhanced Iterative Image Reconstruction Using Extended Power Divergence

In this paper, we propose a method for optimizing the parameter values in iterative reconstruction algorithms that include adjustable parameters in order to optimize the reconstruction performance. Specifically, we focus on the power divergence-based expectation-maximization algorithm, which includes two power indices as adjustable parameters. Through numerical and physical experiments, we demonstrate that optimizing the evaluation function based on the extended power-divergence and weighted extended power-divergence measures yields high-quality image reconstruction. Notably, the optimal parameter values derived from the proposed method produce reconstruction results comparable to those obtained using the true image, even when using distance functions based on differences between forward projection data and measured projection data, as verified by numerical experiments. These results suggest that the proposed method effectively improves reconstruction quality without the need for machine-learning techniques in parameter selection. Our findings also indicate that this approach is useful for enhancing the performance of iterative reconstruction algorithms, especially in medical imaging, where high-accuracy reconstruction under noisy conditions is required.

Retraction Note: Improved electromagnetic compatibility testing for rail vehicles using a quantum-based 3D reconstruction algorithm

Retraction Note: Improved electromagnetic compatibility testing for rail vehicles using a quantum-based 3D reconstruction algorithm

A broadband hyperspectral image sensor with high spatio-temporal resolution.

Hyperspectral imaging provides high-dimensional spatial-temporal-spectral information showing intrinsic matter characteristics1-5. Here we report an on-chip computational hyperspectral imaging framework with high spatial and temporal resolution. By integrating different broadband modulation materials on the image sensor chip, the target spectral information is non-uniformly and intrinsically coupled to each pixel with high light throughput. Using intelligent reconstruction algorithms, multi-channel images can be recovered from each frame, realizing real-time hyperspectral imaging. Following this framework, we fabricated a broadband visible-near-infrared (400-1,700 nm) hyperspectral image sensor using photolithography, with an average light throughput of 74.8% and 96 wavelength channels. The demonstrated resolution is 1,024 × 1,024 pixels at 124 fps. We demonstrated its wide applications, including chlorophyll and sugar quantification for intelligent agriculture, blood oxygen and water quality monitoring for human health, textile classification and apple bruise detection for industrial automation, and remote lunar detection for astronomy. The integrated hyperspectral image sensor weighs only tens of grams and can be assembled on various resource-limited platforms or equipped with off-the-shelf optical systems. The technique transforms the challenge of high-dimensional imaging from a high-cost manufacturing and cumbersome system to one that is solvable through on-chip compression and agile computation.

ACORN+: Adaptive Compression-Reconstruction for Device-Cloud Collaboration Video Services

With the improvement of edge-based autonomous systems such as mobile Industrial IoT(IIoT) networks, edge devices can capture and upload videos with increasing bitrates. Massive edge-computing end nodes are eager for adequate multimedia data to satisfy the requirements of real-time video services. However, existing encoding standards for video services in Web 2.0 are specifically designed for something other than IoT video streaming. We have improved our Adaptive Compression-Reconstruction framework ACORN to obtain ACORN+, based on compressed sensing and recent advances in deep learning. At end nodes, we compress multiple sequential video frames into a single frame to reduce video volume. Given that multiple kinds of intelligent tasks are expected to be finished on the device side, we also designed a device-cloud collaboration scheme where deep learning-based algorithms can be executed on both the device and server sides. Experiments reveal that video analytics can be conducted on compressed frames. Taking action recognition as a device-cloud collaboration use case, we find ACORN+ obtains more than 3x speedup on compressed frames. The reconstruction algorithm in ACORN+ is with 1- 4 dB improvements. Moreover, the encoding time cost and the encoded video volume are reduced by more than 4x under the ACORN+ framework. 1

Research on Triplex Redundant Flight Control System Based on M1394B Bus

In the modern aviation field, flight control systems’ reliability and safety are paramount. This paper presents a triplex redundant flight control system based on the M1394B bus and designs several key algorithms to enhance system performance. Firstly, a triplex redundant flight control system with a redundant bus structure is constructed based on the characteristics of the M1394B bus. Secondly, a periodic synchronization algorithm with automatic adjustment capabilities is designed to achieve periodic synchronization among the Vehicle Management Computers. An improved voting algorithm based on a sliding window is proposed to enhance the decision-making accuracy and reliability of the control commands output by the flight control system. Additionally, a system reconstruction algorithm is designed to promptly identify and isolate faults, enabling the recovery and reallocation of system resources. Finally, experiments validate the effectiveness of the synchronization algorithm, voting algorithm, and system reconstruction algorithm. The results indicate that the system can effectively address practical engineering challenges and significantly improve reliability and stability. This research provides an essential theoretical foundation and practical reference for the design of future flight control systems for unmanned aerial vehicles and aircraft, holding significant relevance to application.

An in-air synthetic aperture sonar dataset of target scattering in environments of varying complexity

This paper describes a synthetic aperture sonar (SAS) dataset collected in-air consisting of four types of targets in four environments of different complexity. The in-air laboratory based experiments produced data with a level of fidelity and ground truth accuracy that is not easily attainable in data collected underwater. The range of complexity, high level of data fidelity, and accurate ground truth provides a rich dataset with acoustic features on multiple scales. It can be used to develop new signal-processing and image reconstruction algorithms, as well as machine learning models for object detection and classification. It may also find application in model verification and validation for acoustic simulators. The dataset consists of raw acoustic time series returns, associated environmental conditions, hardware configuration, array motion, as well as the reconstructed imagery.

Enhancing image reconstruction in photoacoustic imaging using spatial coherence mean-to-standard-deviation factor beamforming

In photoacoustic imaging (PAI), a delay-and-sum (DAS) beamforming reconstruction algorithm is widely used due to its ease of implementation and fast execution. However, it is plagued by issues such as high sidelobe artifacts and low contrast, that significantly hinder the ability to differentiate various structures in the reconstructed images. In this study, we propose an adaptive weighting factor called spatial coherence mean-to-standard deviation factor (scMSF) in DAS, which is extended into the spatial frequency domain. By combining scMSF with a minimum variance (MV) algorithm, the clutter level is reduced, thereby enhancing the image contrast. Quantitative results obtained from the phantom experiment demonstrate that our proposed method improves contrast ratio (CR) by 30.15 dB and signal-to-noise ratio (SNR) by 8.62 dB compared to DAS while also improving full-width at half maxima (FWHM) by 56%. From the in-vivo experiments, the scMSF-based reconstruction image exhibits a higher generalized contrast-to-noise ratio (gCNR), indicating improved target detectability with a 25.6% enhancement over DAS and a 22.5% improvement over MV.

Reconstruction of flame permittivity distribution based on ECT and Lp regularized D-bar method

Abstract The measurement of flame permittivity is significant in obtaining the combustion state. A method of Lp regularized D-bar is proposed in this article, which is used to reconstruct flame permittivity distribution by electrical capacitance tomography (ECT). Firstly, the distribution characteristic of flame permittivity is analyzed using the electric probe method. The simulation model of ECT flame measurement is set up based on the result of flame permittivity distribution. Then, the relationship model between the truncation radius of the D-bar algorithm and noise level is fitted based on the simulation reconstruction results of flame permittivity. The truncation radius of the D-bar algorithm for flame permittivity reconstruction is obtained by the relationship model. The Lp regularization is introduced into the scattering transformation solving of the D-bar algorithm, and the simulation results of flame permittivity reconstruction under different p-values are compared. In the experiment, the reconstruction of flame permittivity by the D-bar algorithm with different truncation radii is compared. The experimental results verify the truncation radius strategy based on noise level. Moreover, compared with L 1 and L 2 regularization methods, Lp regularization combined with the D-bar algorithm is more accurate in the experiment results of flame permittivity reconstruction.

Cuff-less wearable biosensor in continuous noninvasive human radial artery pulse waveform and blood pressure measurement using self-mixing interferometry

In this paper, we propose a compact, wearable biosensor for the noninvasive measurement of human radial artery pulse waveform curve (PWC) and blood pressure (BP). In this system, self-mixing interferometry (SMI) technology is employed to measure the weak arterial vascular deformation, enabling accurate PWC retrieval. Based on the reconstructed PWC features, BP values are precisely estimated by means of deep learning method. Here continuous wavelet transform (CWT), enabling visualization of the relationship between the SMI signal temporal frequency components and the PWC characteristics, is highlighted for PWC flipping points seeking and convolutional neural network (CNN) input parameter acquisition. For the first time, a novel deep learning network preprocessing method is proposed that allows direct feature extraction from the CWT scalogram of SMI signal without the complicated PWC reconstruction algorithm. The robustness and accuracy of our device are validated by a series of clinical measurements, mean absolute error (MAE) and standard deviation (STD) values are calculated and compared with the existing models. We approach minimal BP estimation results (MAE ± STD) of 1.41 ± 1.89 mmHg for systolic blood pressure (SBP) and 1.78 ± 2.01 mmHg for diastolic blood pressure (DBP), respectively. The luxuriant novelties and remarkable performance clearly demonstrate our wearable sensor’s great potential in BP monitoring, and other clinical applications.

Enhancing high-resolution reconstruction of flow fields using physics-informed diffusion model with probability flow sampling

The application of artificial intelligence (AI) technology in fluid dynamics is becoming increasingly prevalent, particularly in accelerating the solution of partial differential equations and predicting complex flow fields. Researchers have extensively explored deep learning algorithms for flow field super-resolution reconstruction. However, purely data-driven deep learning models in this domain face numerous challenges. These include susceptibility to variations in data distribution during model training and a lack of physical and mathematical interpretability in the predictions. These issues significantly impact the effectiveness of the models in practical applications, especially when input data exhibit irregular distributions and noise. In recent years, the rapid development of generative artificial intelligence and physics-informed deep learning algorithms has created significant opportunities for complex physical simulations. This paper proposes a novel approach that combines diffusion models with physical constraint information. By integrating physical equation constraints into the training process of diffusion models, this method achieves high-fidelity flow field reconstruction from low-resolution inputs. Thus, it not only leverages the advantages of diffusion models but also enhances the interpretability of the models. Experimental results demonstrate that, compared to traditional methods, our approach excels in generating high-resolution flow fields with enhanced detail and physical consistency. This advancement provides new insights into developing more accurate and generalized flow field reconstruction models.

Roodmus: a toolkit for benchmarking heterogeneous electron cryo-microscopy reconstructions.

Conformational heterogeneity of biological macromolecules is a challenge in single-particle averaging (SPA). Current standard practice is to employ classification and filtering methods that may allow a discrete number of conformational states to be reconstructed. However, the conformation space accessible to these molecules is continuous and, therefore, explored incompletely by a small number of discrete classes. Recently developed heterogeneous reconstruction algorithms (HRAs) to analyse continuous heterogeneity rely on machine-learning methods that employ low-dimensional latent space representations. The non-linear nature of many of these methods poses a challenge to their validation and interpretation and to identifying functionally relevant conformational trajectories. These methods would benefit from in-depth benchmarking using high-quality synthetic data and concomitant ground truth information. We present a framework for the simulation and subsequent analysis with respect to the ground truth of cryo-EM micrographs containing particles whose conformational heterogeneity is sourced from molecular dynamics simulations. These synthetic data can be processed as if they were experimental data, allowing aspects of standard SPA workflows as well as heterogeneous reconstruction methods to be compared with known ground truth using available utilities. The simulation and analysis of several such datasets are demonstrated and an initial investigation into HRAs is presented.

Reduction of ringing artifacts induced by diaphragm drifting in free-breathing dynamic pulmonary MRI using 3D koosh-ball acquisition.

To reduce the ringing artifacts of the motion-resolved images in free-breathing dynamic pulmonary MRI. A golden-step based interleaving (GSI) technique was proposed to reduce ringing artifacts induced by diaphragm drifting. The pulmonary MRI data were acquired using a superior-inferior navigated 3D radial UTE sequence in an interleaved manner during free breathing. Successive interleaves were acquired in an incoherent fashion along the polar direction. Four-dimensional images were reconstructed from the motion-resolved k-space data obtained by retrospectively binning. The reconstruction algorithms included standard nonuniform fast Fourier transform (NUFFT), Voronoi-density-compensated NUFFT, extra-dimensional UTE, and motion-state weighted motion-compensation reconstruction. The proposed interleaving technique was compared with a conventional sequential interleaving (SeqI) technique on a phantom and eight subjects. The quantified ringing artifacts level in the motion-resolved image is positively correlated with the quantified nonuniformity level of the corresponding k-space. The nonuniformity levels of the end-expiratory and end-inspiratory k-space binned from GSI data (0.34 ± 0.07, 0.33 ± 0.05) are significantly lower with statistical significance (p < 0.05) than that binned from SeqI data (0.44 ± 0.11, 0.42 ± 0.12). Ringing artifacts are substantially reduced in the dynamic images of eight subjects acquired using the proposed technique in comparison with that acquired using the conventional SeqI technique. Ringing artifacts in the motion-resolved images induced by diaphragm drifting can be reduced using the proposed GSI technique for free-breathing dynamic pulmonary MRI. This technique has the potential to reduce ringing artifacts in free-breathing liver and kidney MRI based on full-echo interleaved 3D radial acquisition.

Imaging of permeability defect distribution by electromagnetic tomography with hybrid L1 norm and nuclear norm penalty terms

Electromagnetic tomography (EMT), with the advantages of being non-contact, non-invasiveness, low cost, simple structure, and fast imaging speed, is a multi-functional tomography technique based on boundary measurement voltages to image the conductivity distribution within the sensing field. EMT is widely used in industrial and biomedical fields. Currently, there are few studies on the application of EMT in magnetic permeability materials, which makes it difficult to obtain high-quality reconstructed images due to its own properties that lead to obvious attenuation of electromagnetic waves during propagation, as well as the ill-posed and ill-conditioned characteristics of EMT. In this paper, a multi-feature objective function integrating L2 norm regularization, L1 norm regularization, and low-rank norm regularization is proposed to solve the challenge of magnetic permeability material imaging. This approach emphasizes the smoothness and sparsity. The split Bregman algorithm is introduced to efficiently solve the proposed objective function by decomposing the complex optimization problem into several simple sub-task iterative schemes. In addition, a nine-coil planar array electromagnetic sensor was developed and a flexible modular EMT system was constructed. We use correlation coefficient and error coefficient as indicators to evaluate the performance of the proposed image reconstruction algorithm. The effectiveness of the proposed method in improving the reconstruction accuracy and robustness is verified through numerical simulations and experiments.

A calibration-informed deep learning model for three-dimensional particle reconstruction of volumetric particle image velocimetry

Accurately reconstructing three-dimensional particle fields is essential in fluid velocity measurement research. This study addresses the limitations of current three-dimensional (3D) particle reconstruction methods, such as computational efficiency, precision at high particle density, and particle morphology issues, by introducing a calibration-informed deep learning model named the calibrated pixel to voxel convolutional neural network (CPV-CNN) for 3D Particle Reconstruction. This innovative neural network framework employs a unique Gaussian attention mechanism that bridges pixels and voxels, enabling the mapping of pixel features from two-dimensional (2D) particle images to 3D voxel features. This approach eliminates the need for an initial particle field for particle reconstruction, while significantly enhancing reconstruction efficiency. Additionally, the neural network incorporates camera calibration parameters and the physical coordinates of the reconstructed domain, thereby improving the model's generalization capability and flexibility. Numerical experiments demonstrate that CPV-CNN delivers superior results in terms of accuracy, generalization, and robustness in 3D particle reconstruction. The reconstructed particles exhibit favorable morphology, without the elongation issues commonly observed with conventional methods. This achievement illustrates a practical particle reconstruction algorithm based on artificial intelligence (AI) techniques and represents an important step toward developing an end-to-end AI-based particle reconstruction method in the future.

Distorted Magnetic Flux Ropes within Interplanetary Coronal Mass Ejections

Magnetic flux ropes (MFRs) at the center of interplanetary coronal mass ejections (ICMEs) are often characterized as simplistic cylindrical or toroidal tubes with field lines that twist around the cylinder or torus axis. Recent multipoint observations suggest that the overall geometry of these large-scale structures may be significantly more complex. As such, contemporary modeling approaches are likely insufficient to properly understand the global structure of any ICME. In an attempt to rectify this issue, we have developed a novel flux rope modeling approach that allows for the description of arbitrary distortions of the flux rope cross section or deformation of the magnetic axis. The resulting distorted MFR model is a fully analytic model that can be used to describe a complex geometry and is numerically efficient enough to be used for event reconstructions. To demonstrate the usefulness of our approach, we focus on a specific implementation of our model and apply it to an ICME event that was observed in situ on 2023 April 23 at the L1 point by the Wind spacecraft and also by the STEREO-A spacecraft, which was 10.°2 further east and 0.°9 south in heliographic coordinates. We demonstrate that our model can accurately reconstruct each observation individually and also gives a fair reconstruction of both events simultaneously using a multipoint reconstruction algorithm, which results in a geometry that is inconsistent with a cylindrical or toroidal approximation.

Advances in Miniaturized Computational Spectrometers.

Miniaturized computational spectrometers have emerged as a promising strategy for miniaturized spectrometers, which breaks the compromise between footprint and performance in traditional miniaturized spectrometers by introducing computational resources. They have attracted widespread attention and a variety of materials, optical structures, and photodetectors are adopted to fabricate computational spectrometers with the cooperation of reconstruction algorithms. Here, a comprehensive review of miniaturized computational spectrometers, focusing on two crucial components: spectral encoding and reconstruction algorithms are provided. Principles, features, and recent progress of spectral encoding strategies are summarized in detail, including space-modulated, time-modulated, and light-source spectral encoding. The reconstruction algorithms are classified into traditional and deep learning algorithms, and they are carefully analyzed based on the mathematical models required for spectral reconstruction. Drawing from the analysis of the two components, cooperations between them are considered, figures of merits for miniaturized computational spectrometers are highlighted, optimization strategies for improving their performance are outlined, and considerations in operating these systems are provided. The application of miniaturized computational spectrometers to achieve hyperspectral imaging is also discussed. Finally, the insights into the potential future applications and developments of computational spectrometers are provided.

A Review of Factors Affecting Radiation Dose and Image Quality in Coronary CTA Performed with Wide-Detector CT

Compared with traditional invasive coronary angiography (ICA), coronary CT angiography (CCTA) has the advantages of being rapid, economical, and minimally invasive. The wide-detector CT, with its superior temporal resolution and robust three-dimensional reconstruction technology, thus enables CCTA in patients with high heart rates and arrhythmias, leading to a high potential for clinical application. This paper systematically summarizes wide-detector CT hardware configurations of various vendors routinely used for CCTA examinations and reviews the effects of patient heart rate and heart rate variability, scanning modality, reconstruction algorithms, tube voltage, and scanning field of view on image quality and radiation dose. In addition, novel technologies in the field of CT applied to CCTA examinations are also presented. Since this examination has a diagnostic accuracy that is highly consistent with ICA, it can be further used as a routine examination tool for coronary artery disease in clinical practice.

Spectral cluster supertree: fast and statistically robust merging of rooted phylogenetic trees

The algorithms for phylogenetic reconstruction are central to computational molecular evolution. The relentless pace of data acquisition has exposed their poor scalability and the conclusion that the conventional application of these methods is impractical and not justifiable from an energy usage perspective. Furthermore, the drive to improve the statistical performance of phylogenetic methods produces increasingly parameter-rich models of sequence evolution, which worsens the computational performance. Established theoretical and algorithmic results identify supertree methods as critical to divide-and-conquer strategies for improving scalability of phylogenetic reconstruction. Of particular importance is the ability to explicitly accommodate rooted topologies. These can arise from the more biologically plausible non-stationary models of sequence evolution. We make a contribution to addressing this challenge with Spectral Cluster Supertree, a novel supertree method for merging a set of overlapping rooted phylogenetic trees. It offers significant improvements over Min-Cut supertree and previous state-of-the-art methods in terms of both time complexity and overall topological accuracy, particularly for problems of large size. We perform comparisons against Min-Cut supertree and Bad Clade Deletion. Leveraging two tree topology distance metrics, we demonstrate that while Bad Clade Deletion generates more correct clades in its resulting supertree, Spectral Cluster Supertree’s generated tree is generally more topologically close to the true model tree. Over large datasets containing 10,000 taxa and ∼500 source trees, where Bad Clade Deletion usually takes ∼2 h to run, our method generates a supertree in on average 20 s. Spectral Cluster Supertree is released under an open source license and is available on the python package index as sc-supertree.