Nucleophilic Substitution Research Articles

Valence band XPS spectra of K silicate glasses: Effect of HOMO energies on K, Na and Li leach rates, activation energies and reaction mechanism

X-ray Photoelectron spectra of K-silicate glass valence bands (VBs) are composed of distinct upper and lower bands, separated by a minimum at ∼10 eV binding energy. A third, narrow band at ∼4.5 eV represents the highest energy occupied molecular orbitals (HOMOs). Na and Li glass VBs are similarly composed of upper, lower and HOMOs bands. The HOMOs reside only on NBO atoms (NBO = O atoms of the Si-O-M moiety; M = alkali), are non-bonding orbitals of O 2py character and are located at 4.5, 4.8 and 5.2 eV in K, Na and Li glasses. The order corresponds to alkali leach rates in water. We propose a SN reaction mechanism and Frontier Molecular Orbital concepts for leaching involving the HOMOs of the glasses and the LUMO of an adsorbed water molecule. The activated complex, Si-NBO*-M (NBO* = NBO•••HO-H), is formed through H-bonding of a solvent H2O molecule to NBO.

Covalent organic framework‐derived Fe, Co‐nitrogen codoped carbon as a bifunctional electrocatalyst for rechargeable efficient Zn–air batteries

AbstractThe development of cathode materials with controllable physicochemical structures and explicit catalytic sites is important in rechargeable Zn–air batteries (ZABs). Covalent organic frameworks (COFs) have garnered increasing attention owing to their facile synthesis methods, ordered pore structure, and selectivity of functional groups. However, the sluggish kinetics of oxygen evolution reaction (OER) or oxygen reduction reaction (ORR) inhibit their practical applications in ZABs. Herein, nucleophilic substitution is adopted to synthesize pyridine bi‐triazine covalent organic framework (denoted as O‐COF), and meanwhile, ionothermal conversion synthesis is employed to load MOx (M=Fe, Co) onto carbon nanosheet (named as FeCo@NC) to modulate the electronic structure. The Fe, Co‐N codoped carbon material possesses a large portion of pyridinic N and M‐N, high graphitization, and a larger BET surface area. An outstanding bifunctional activity has been exhibited in FeCo@NC, which provides a small voltage at 10 mA cm−2 for OER (E10 = 1.67 V) and a remarkable half‐wave voltage for ORR (E1/2 = 0.86 V). More impressively, when assembling ZABs, it displays notable rate performance, significant specific capacity (783.9 mAh gZn−1), and satisfactory long‐term endurance. This method of regulating covalent organic framework and ionothermal synthesis can be extended to design diverse catalysts.

Effectively adsorb Au(S2O3)23- using aminoguanidine as trapping group from thiosulfate solutions.

Thiosulfate gold leaching is one of the most promising green cyanide-free gold extraction processes; however, the difficulty of recovering Au(I) from the leaching system hinders its further development. This study prepared aminoguanidine-functionalized microspheres (AGMs) via a one-step reaction involving nucleophilic substitution between aminoguanidine hydrochloride and chloromethylated polystyrene microspheres and used AGMs to adsorb Au(I) from thiosulfate solutions. Scanning electron microscopy, Brunauer-Emmett-Teller analysis, Fourier transform infrared spectroscopy, and X-ray photoelectron spectroscopy were used to analyze the structure and properties of AGMs. Experiments were designed to investigate the effects of pH, temperature, initial Au(I), and thiosulfate concentrations on the gold adsorption performance of AGMs. Results demonstrated that AGMs can efficiently adsorb Au(I) from thiosulfate solutions in a wide pH range. The adsorption process conforms to the pseudo-second-order kinetic model and Langmuir isotherm model, with a maximum capacity of 22.03kg/t. Acidic thiourea is an effective desorbent, and after four adsorption-desorption cycles, the adsorption rate of Au(I) by AGMs is 78.63%, which shows AGMs have good cyclic application potential. Based on the results of characterization, experiments, and density functional theory calculations, the mechanism for the adsorption of [Au(S2O3)2]3- on AGMs involves anion exchange. Importantly, AGMs exhibited satisfactory adsorption property for Au(I) in practical Cu2+-NH3(en)-S2O32- systems. This study provided experimental reference for the recovery of Au(I) from thiosulfate solution.

Phosphate-based, heteroatom-rich porous organic polymers for efficacious uptake of iodine in vapor phase

Radioactive iodine pollution from nuclear waste poses significant threat to both the environment and human health. As a result, the utmost importance lies in the capture and safe storage of radioactive iodine. To address this concern, a set of porous organic polymers with phosphate linkages, namely AZO-POP-P, OPN-3, OPN-4, and OPN-5, were synthesized for the uptake of iodine in vapor phase. Additionally, a triazine-based porous organic polymer, AZO-POP-T was also synthesized to compare the iodine uptake capacity. Syntheses of these phosphate-linked and triazine-based polymers involved a nucleophilic substitution reaction of various aromatic alcohols with POCl3 or cyanuric chloride, respectively. This study represents an inaugural investigation into the iodine uptake capability by phosphate-based porous organic polymers. They exhibited efficient iodine capture from vapor phase, demonstrating uptake capacities of 3.56, 1.30, 2.70, and 0.63 g.g−1 for AZO-POP-P, OPN-3, OPN-4, and OPN-5 respectively, at 75 °C. Meanwhile, the triazine-based AZO-POP-T exhibited an uptake capacity of 1.83 g.g−1 at 75 °C. These porous organic polymers demonstrated easy and scalable synthesis, high thermal stability, and recyclability for at least five cycles without significant decrease in the uptake capacity towards volatile iodine from vapour phase.

Expedient Access to 18F‐Fluoroheteroarenes via Deaminative Radiofluorination of Aniline‐Derived Pyridinium Salts

AbstractHerein, we disclose that pyridinium salts derived from abundant (hetero)anilines represent a novel precursor class for nucleophilic aromatic substitution reactions with [18F]fluoride. The value of this new 18F‐fluorodeamination is demonstrated with the synthesis of over 30 structurally diverse and complex heteroaryl 18F‐fluorides, several derived from scaffolds that were yet to be labelled with fluorine‐18. The protocol tolerates heteroarenes and functionalities commonly found in drug discovery libraries, and is amenable to scale‐up and automation on a commercial radiosynthesiser.

Expedient Access to 18F-Fluoroheteroarenes via Deaminative Radiofluorination of Aniline-Derived Pyridinium Salts.

Herein, we disclose that pyridinium salts derived from abundant (hetero)anilines represent a novel precursor class for nucleophilic aromatic substitution reactions with [18F]fluoride. The value of this new 18F-fluorodeamination is demonstrated with the synthesis of over 30 structurally diverse and complex heteroaryl 18F-fluorides, several derived from scaffolds that were yet to be labelled with fluorine-18. The protocol tolerates heteroarenes and functionalities commonly found in drug discovery libraries, and is amenable to scale-up and automation on a commercial radiosynthesiser.

Synthesis of Selenium Derivatives using Organic Selenocyanates as Masked Selenols: Chemical Reduction with Rongalite as a Simpler Tool to give Nucleophilic Selenides.

The chemical reduction within a family of organic selenocyanates, as masked selenols, using reducing agents, such as Rongalite, sodium dithionite, and sodium thiosulfate is investigated. Using Rongalite, the corresponding diselenides were obtained quantitatively and selectively in very good to excellent yields (51-100 %) starting from alkyl, aryl, and benzyl selenocyanates. The scope of the reaction is unaffected by the electronic nature of the substituents. Furthermore, the reducing agent, Rongalite, is compatible with hydrolysable and reducing-sensitive functional groups. Additionally, a simple methodology employing the in-situ generated benzyl selenolate anion (PhCH2Se-) to promote aliphatic nucleophilic substitution, epoxide ring opening, and Michael addition reactions has been developed; thus, extending the structural diversity of the synthesized selenium derivatives.

Expedient Synthesis of Alkyl and Aryl Thioethers Using Xanthates as Thiol-Free Reagents.

Thioethers are critical in the fields of pharmaceuticals and organic synthesis, but most of the methods for synthesis alkyl thioethers employ foul-smelling thiols as starting materials or generate them as by-products. Additionally, most thiols are air-sensitive and are easily oxidized to produce disulfides under atmospheric conditions; thus, a novel method for synthesizing thioethers is necessary. This paper reports a simple, effective, green method for synthesizing dialkyl or alkyl aryl thioether derivatives using odorless, stable, low-cost ROCS2K as a thiol surrogate. This transformation offers a broad substrate scope and good functional group tolerance with excellent selectivity. The reaction likely proceeds via xanthate intermediates, which can be readily generated via the nucleophilic substitution of alkyl halides or aryl halides with ROCS2K under transition-metal-free and base-free conditions.

Electrospun nanofiber membrane of 14-crown-4 polyimide by in situ grafting diamino crown ether for highly selective Li+ adsorption and separation

The global demand for lithium is increasing rapidly with the blossom of the new energy field. It is imperative to develop a sustainable and efficient approach for recovering Li+ resources from salt-lake brine. In this study, diamino dibenzo-14-crown-4 ether (DAB) was chemically grafted on 14-crown-4 polyimide (14C4PI) by nucleophilic substitution to fabricate nanofiber membrane by electrospinning method. The crown ether loading of DAB-g-14C4PI membrane was increased from 1.38 up to 2.27 mmol/g, and the grafting degree reached 83.4 % by regulating the additive amount of DAB and the reaction time. The Li+ equilibrium adsorption capacity of the DAB-g-14C4PI nanofiber membrane was enlarged from 40.17 (14C4PI) to 60.71 mg/g. The adsorption for Li+ on the membrane was a monolayer chemical adsorption process proved by the adsorption kinetic and isotherm models. The separation factors of the membrane for Li+/Na+, Li+/K+, Li+/Mg2+ and Li+/Ca2+ were 69.24, 79.4, 37.46 and 67.53, respectively. DFT calculations indicated the raised Li+ adsorption capacity was also ascribed to the enhanced adsorption energy from −107.71 to −122.84 kcal/mol, owing to the relatively higher electric charge density (−0.478 vs −0.448 a.u.). In summary, this work put forward a novel method to fabricate a nanofiber membrane with a high crown ether loading for the extraction of lithium resources.

Stereospecific alkenylidene homologation of organoboronates by SNV reaction.

Concerted nucleophilic substitution, known as SN2 reaction, is a fundamental organic transformation used in synthesis to introduce new functional groups and construct carbon-carbon and carbon-heteroatom bonds1. SN2 reactions typically involve backside attack of a nucleophile to the σ* orbital of a C(sp3)-X bond (X = halogen or other leaving group), resulting in complete inversion of a stereocentre2. By contrast, the corresponding stereoinvertive nucleophilic substitution on electronically unbiased sp2 vinyl electrophiles, namely concerted SNV(σ) reaction, is much rarer, and so far limited to carefully designed substrates mostly in ring-forming processes3,4. Here we show that concerted SNV reactions can be accelerated by a proposed strain-release mechanism in metallated complexes, leading to the development of a general and stereospecific alkenylidene homologation of diverse organoboronates. This method enables the iterative incorporation of multiple alkenylidene units, giving cross-conjugated polyenes that are challenging to prepare otherwise. Further application to the synthesis of bioactive compounds containing multi-substituted alkenes is also demonstrated. Computational studies suggest an unusual SN2-like concerted pathway promoted by diminishing steric strain in the square planar transition state, which explains the high efficiency and stereoinversive feature of this metallate SNV reaction.

Unveiling polycrystalline silicon channel dissolution mechanism in wet etching process of 3D NAND fabrication

3D NAND is one of the most promising storage devices due to its high storage density and low energy consumption. Selective wet etching of Si3N4 by hot-concentrated phosphoric acid (PA) solution is a key process for 3D NAND fabrication. However, the channel material, polycrystalline silicon (poly-Si), is unexpectedly dissolved due to its inevitable exposure to the PA etching solution, which causes device failure and thus limits the stacking density of 3D NAND. Herein, to avoid the detrimental dissolution of poly-Si, we unveil the mechanism of poly-Si dissolution in PA solution from kinetic and thermodynamic perspectives. We find that the etch process shows a two-stage reaction, in which H2O plays a key role in lowering the activation barrier for poly-Si etching. Further thermodynamic analysis demonstrates that poly-Si prefers to be oxidized by H2O to suboxide rather than to SiO2. Combined with surface chemistry characterization, we propose the dissolution mechanism as a two-stage process involving the dissolution of suboxide interface and bulk poly-Si, where the nucleophilic substitution of Si–H with Si–OH on bulk poly-Si surface determines the overall etch rate. This study advances the 3D NAND development by establishing a theoretical foundation for identifying and implementing efficacious strategies to impede detrimental dissolution.

Observation of unusual outer-sphere mechanism using simple alkenes as nucleophiles in allylation chemistry

Transition-metal catalyzed allylic substitution reactions of alkenes are among the most efficient methods for synthesizing diene compounds, driven by the inherent preference for an inner-sphere mechanism. Here, we present a demonstration of an outer-sphere mechanism in Rh-catalyzed allylic substitution reaction of simple alkenes using gem-difluorinated cyclopropanes as allyl surrogates. This unconventional mechanism offers an opportunity for the fluorine recycling of gem-difluorinated cyclopropanes via C − F bond cleavage/reformation, ultimately delivering allylic carbofluorination products. The developed method tolerates a wide range of simple alkenes, providing access to secondary, tertiary fluorides and gem-difluorides with 100% atom economy. DFT calculations reveal that the C − C bond formation goes through an unusual outer-sphere nucleophilic substitution of the alkenes to the allyl-Rh species instead of migration insertion, and the generated carbon cation then forms the C − F bond with tetrafluoroborate as a fluoride shuttle.

Diagnosis of Nonalcoholic Fatty Liver Disease via a H2S-Responsive Bioluminescent Probe Combined with Firefly Luciferase mRNA Delivery.

The early detection of nonalcoholic fatty liver disease (NAFLD) through bioluminescent probes is of great significance. However, there remains a challenge to apply them in nontransgenic natural animals due to the lack of exogenous luciferase. To address this issue, we herein report a new strategy for in situ monitoring of endogenous hydrogen sulfide (H2S) in the liver of NAFLD mice by leveraging a H2S-responsive bioluminescent probe (H-Luc) combined with firefly luciferase (fLuc) mRNA delivery. The probe H-Luc was created by installing a H2S recognition moiety, 2,4-dinitrophenol, onto the luciferase substrate (d-luciferin), which is allowed to release cage-free d-luciferin in the presence of H2S via a nucleophilic aromatic substitution reaction. In the meantime, the intracellular luciferase was introduced by lipid nanoparticle (LNP)-mediated fLuc mRNA delivery, rendering it suitable for bioluminescence (BL) imaging in vitro and in vivo. Based on this luciferase-luciferin system, the endogenous H2S could be sensitively and selectively detected in living cells, showing a low limit of detection (LOD) value of 0.72 μM. More importantly, after systematic administration of fLuc mRNA-loaded LNPs in vivo, H-Luc was able to successfully monitor the endogenous H2S levels in the NAFLD mouse model for the first time, displaying a 28-fold higher bioluminescence intensity than that in the liver of normal mice. We believe that this strategy may shed new light on the diagnosis of inflammatory liver disease, further elucidating the roles of H2S.

Preparation and photocuring performance of itaconic acid-derived hyperbranched macromers with internal and terminal C[dbnd]C bonds catalyzed by tetramethylguanidine

A series of hyperbranched polymers derived from biomass itaconic acid was prepared via aliphatic nucleophilic substitution polycondensation reaction under mild conditions by using bis(2-bromoethyl) itaconate and trimeric acid as A2 and B3 monomers, respectively, and tetramethylguanidine as catalyst. On this basis, the hyperbranched macromers that contained C = C double bonds in the internal skeleton and the periphery were obtained by further adding A1 monomer (2-bromoethyl acrylate) directly into the reaction system. The successful synthesis of these macromers were confirmed via proton nuclear magnetic resonance, Fourier transform infrared and gel permeation chromatography. The results of photo-differential scanning calorimetry and rheological experiments showed that these macromers exerted a positive effect on the ultraviolet (UV) curing of commercial resin. The properties of cured splines and coatings, such as mechanical properties, pencil hardness, and thermal stability, were considerably improved with the addition of hyperbranched macromers. They were significantly better than those of linear macromers and macromers that contained polymerizable groups only in the inner framework or their terminal units. The results show that both the inner and terminal C = C double bonds of hyperbranched macromers can participate in UV cross-linking. Thus, such macromers may be used as potential additives for high-performance UV curable coatings.

Self-Assembled Lanthanide Supramolecular Helicates: Efficient Catalysts for Synthesis of Heterocyclic Scaffolds

Geometrically unsaturated binuclear double-stranded metallohelicates constructed with pyridyl hydrazine ligands and lanthanide metal ions via metal-templated self-assembly. The single-crystal X-ray analysis suggests the formation of helical assembly through its coordination with pyridyl, azomethine nitrogen’s and ketonic oxygen with metal ions. Lanthanide ions are known to possess multiple coordination sites, other labile sites are occupied with solvents and anions. The lanthanide helicates are exhaustively characterized and adopted as a catalyst to synthesize benzothiazole scaffolds starting from 2-fluoroaniline and phenyl isothiocyanate substrates via tandem thiourea intermediate/cyclization pathway. The mechanistic investigation suggests the reaction proceeds via the nucleophilic aromatic substitution pathway. The protocols are extended for the synthesis of drug molecules such as Riluzole and Dimazole.

Sustainable and Safe N-alkylation of N-heterocycles by Propylene Carbonate under Neat Reaction Conditions.

A new, eco-friendly process utilising the green solvent propylene carbonate (PC) has been developed to perform N-alkylation of N-, O- and/or S-containing heterocyclic compounds. PC in these reactions served as both the reagent and solvent. Importantly, no genotoxic alkyl halides were required. No auxiliary was necessary when using anhydrous PC. Product formation includes nucleophilic substitution with the concomitant loss of water and carbon dioxide. Substrates prepared, including the newly invented PROTAC drugs, are widely used.

Hydrogen Sulfide-Induced Activatable Photodynamic Therapy Adjunct to Disruption of Subcellular Glycolysis in Cancer Cells by a Fluorescence-SERS Bimodal Iridium Metal-Organic Hybrid.

The practical application of photodynamic therapy (PDT) demands targeted and activatable photosensitizers to mitigate off-target phototoxicity common in "always on" photosensitizers during light exposure. Herein, a cyclometalated iridium complex-based activatable photodynamic molecular hybrid, Cy-Ir-7-nitrobenzofurazan (NBD), is demonstrated as a biomedicine for molecular precision. This design integrates a hydrogen sulfide (H2S)-responsive NBD unit with a hydroxy-appended iridium complex, Cy-Ir-OH. In normal physiological conditions, the electron-rich Ir metal center exerts electron transfer to the NBD unit, quenches the excited state dynamics, and establishes a PDT-off state. Upon exposure to H2S, Cy-Ir-NBD activates into the potent photosensitizer Cy-Ir-OH through nucleophilic substitution. This mechanism ensures exceptional specificity, enabling targeted phototherapy in H2S-rich cancer cells. Additionally, we observed that Cy-Ir-NBD-induced H2S depletion disrupts S-sulfhydration of the glyceraldehyde-3-phosphate dehydrogenase enzyme, impairing glycolysis and ATP production in the cellular milieu. This sequential therapeutic process of Cy-Ir-NBD is governed by the positively charged central iridium ion that ensures mitochondria-mediated apoptosis in cancer cells. Dual-modality SERS and fluorescence imaging validate apoptotic events, highlighting Cy-Ir-NBD as an advanced theranostic molecular entity for activatable PDT. Finally, as a proof of concept, clinical assessment is evaluated with the blood samples of breast cancer patients and healthy volunteers, based on their H2S overexpression capability through SERS and fluorescence, revealing Cy-Ir-NBD to be a promising predictor for PDT activation in advanced cancer phototherapy.

Two-Step Synthesis of 4-Hydroxy-3,5-dimethylphenyl Benzoate: Undergraduate Organic Laboratory of Electrophilic Aromatic Substitution and Nucleophilic Aromatic Substitution

Two-Step Synthesis of 4-Hydroxy-3,5-dimethylphenyl Benzoate: Undergraduate Organic Laboratory of Electrophilic Aromatic Substitution and Nucleophilic Aromatic Substitution

An optimization-free Fisher information driven approach for online design of experiments

Developing mathematical models used to elucidate reaction kinetics plays a crucial role in the design, control, and optimization of chemical processes. One of the most challenging tasks in kinetic model identification is the precise estimation of unknown kinetic model parameters. This challenge can be effectively addressed through the application of Model-Based Design of Experiments (MBDoE) techniques, which enable the design of experiments facilitating precise model parameter estimation with minimal runs and analytical resources. Nevertheless, MBDoE techniques rely on an optimization procedure that is susceptible to parametric uncertainty, making the design procedure computationally intensive and prone to issues of local optimality. MBDoE techniques are also employed in online procedures to expedite the identification of kinetic models in autonomous platforms. As a result, ensuring rapid convergence becomes imperative to mitigate numerical issues during operational processes. In this paper a Fisher Information Matrix Driven (FIMD) approach is introduced to tackle these challenges. The methodology integrates a sampling-based experimental design approach with experiment ranking based on FIM to select the most informative experiment at each iteration. The effectiveness of the proposed design methodology is examined and discussed via two different case studies of increasing complexity: a fed-batch reactor in which the fermentation of baker’s yeast is carried out and a nucleophilic aromatic substitution in a flow reactor system.

One-Pot Expeditious Synthesis of Pyrazoloindolones via Base-Promoted Electrocyclization, C–N Coupling and Intramolecular Oxidative Cyclization

AbstractPyrazoloindolones are synthesized from N-tosylhydrazones in a one-pot multistep process which include base-promoted (i) electrocyclization reaction of N-tosylhydrazones derived from α,β-unsaturated aldehydes, (ii) aromatic nucleophilic substitution, and (iii) a domino cyclization–oxidation process under aerobic conditions.