Biological invasion is one of the important reasons for the decline of freshwater biodiversity in China and even in the world. The Pearl river basin is one of the most threatened areas in China by biological invasion. Over the past four decades, mrigal carp Cirrhinus mrigala and rohu Labeo rohita have invaded the Pearl river. They potentially pose a huge threat to a well-known economic species, native mud carp Cirrhinus molitorella. However, little is known about the likely habitat distributions of these two invasive species, which limits our management of them. In this study, we detected the stable isotope ratios of nitrogen and carbon for fish and quantified their niche overlap with nicheROVER in R. The result showed that the individuals of two invasive species had a higher probability to be found in niche region of native C. molitorella (i.e., 65 % for C. mrigala and 74 % for L. rohita). Moreover, to increase understanding of their habitat distributions and potential range of spread, the existing habitats data of these three fish species obtained from previous literatures and the high-resolution bioclimatic parameters from WorldClim were analyzed via Maxent model. The results stressed that niche overlap was high among species, which could have an impact on local biodiversity in future. Furthermore, the visualization of habitat distributions could help show the dynamic habitat changes of invasive and native species over time, while also provide new insights into the subsequent prevention and control for invasive species in other river regions around the world.