Bimolecular Reaction Rate Constants Research Articles

Cross-validation strategies in QSPR modelling of chemical reactions

ABSTRACT In this article, we consider cross-validation of the quantitative structure-property relationship models for reactions and show that the conventional k-fold cross-validation (CV) procedure gives an ‘optimistically’ biased assessment of prediction performance. To address this issue, we suggest two strategies of model cross-validation, ‘transformation-out’ CV, and ‘solvent-out’ CV. Unlike the conventional k-fold cross-validation approach that does not consider the nature of objects, the proposed procedures provide an unbiased estimation of the predictive performance of the models for novel types of structural transformations in chemical reactions and reactions going under new conditions. Both the suggested strategies have been applied to predict the rate constants of bimolecular elimination and nucleophilic substitution reactions, and Diels-Alder cycloaddition. All suggested cross-validation methodologies and tutorial are implemented in the open-source software package CIMtools (https://github.com/cimm-kzn/CIMtools).

Photochemical origin of reactive radicals and halogenated organic substances in natural waters: A review

Halogenated organic compounds, also termed organohalogens, were initially regarded to be of almost exclusively anthropogenic origin. However, recent research has demonstrated that photochemical reactions are important abiotic sources of organohalogen compounds in sunlit surface waters. Halide ions (X−, X represents Cl, Br and I) are common anions in natural waters and might be oxidized by reactive species originated from photochemistry of dissolved organic matter (DOM) or inorganic photoactive species. The resulting reactive halogen species may react with organic substances with diverse bimolecular reaction rate constants, depending on the complexity and structure of organic substances. Therefore, the chemical mechanism of halogenation remains challenging to be fully elucidated. To better understand the trends in the existing data and to identify the knowledge gaps that may merit further investigation, this review gives an integrative summary on the sources of reactive oxygen species (ROS) and halogen radicals (X/X2−). Photochemical halogenation of phenolic compounds and formation of methyl halide and brominated organic pollutants are highlighted. By evaluating existing literature and identifying some uncertainties, this review emphasizes the environmental significance of sunlight-driven halogenation and proposes further research directions on mechanistic investigation and rational experimental design close to natural systems.

Pilgrim: A thermal rate constant calculator and a chemical kinetics simulator

Pilgrim is a program written in Python and designed to use direct dynamics in the calculation of thermal rate constants of chemical reactions by the variational transition state theory (VTST), based on electronic structure calculations for the potential energy surface. Pilgrim can also simulate reaction mechanisms using kinetic Monte Carlo (KMC).For reaction processes with many elementary steps, the rate constant of each of these steps can be calculated by means of conventional transition state theory (TST) or by using VTST. In the current version, Pilgrim can evaluate thermal rates using the canonical version of reaction-path VTST, which requires the calculation of the minimum energy path (MEP) associated with each elementary step or transition structure. Multi-dimensional quantum effects can be incorporated through the small-curvature tunneling (SCT) approximation. These methodologies are available both for reactions involving a single structure of the reactants and the transition state and also for reactions involving flexible molecules with multiple conformations of the reactant and/or of the transition state. For systems with many conformers, the program can evaluate each of the elementary reaction rate constants by multipath canonical VTST or multi-structural VTST. Moreover, the reactant can be unimolecular or bimolecular.Torsional anharmonicity can be incorporated through either the MSTor or the Q2DTor programs. Dual-level calculations are also available in Pilgrim: automatic high-level single-point energies can be used to correct the energy of reactants, transition states, products, and MEP points using the interpolated single-point energies (ISPE) algorithm.When the rate constants of all the chemical processes of interest are known, by means of their calculation using Pilgrim or alternatively through analytical fits to the rate constants as functions of temperature, it is possible to simulate a multistep mechanism under specified laboratory conditions using KMC. This algorithm allows performing a kinetic simulation to monitor the evolution of each chemical species with time and obtain the product yields. Program summaryProgram Title: PilgrimCPC Library link to program files:http://dx.doi.org/10.17632/24cj4dwxvg.1Developer’s repository link:https://github.com/cathedralpkg/pilgrim/releases; https://comp.chem.umn.edu/pilgrim; https://conservancy.umn.edu/handle/11299/166578Licensing provisions: MITProgramming language: Python 3Nature of problem: Calculation of thermal rate constants for bimolecular and unimolecular chemical reactions and simulation of reaction mechanismsSolution method: The program uses variational transition state theory to calculate thermal rate constants and kinetic Monte Carlo to simulate reaction mechanisms.Restrictions and unusual features: The program cannot treat reactions without saddle points. Unimolecular reactions are calculated only in the high-pressure limit. Direct dynamics calculations with Pilgrim require an electronic structure package to be supplied by the user; currently, Pilgrim supports the Gaussian [Frisch et al. (2003), Frisch et al. (2016a), Frisch et al. (2016b)] and Orca [Neese (2011)] electronic structure packages. Pilgrim has an especially powerful suite of options for handling torsional anharmonicity and multistructural effects.

Mechanistic investigation of humic substances assisted photodegradation of imipramine under simulated sunlight

Imipramine (IMI) is a frequently prescribed tricyclic antidepressant and widely detected in the natural waters, while the environmental fate of IMI is yet poorly understood. Here, we investigated the photodegradation of IMI under simulated sunlight in the presence of humic substances (HS), typically including humic acid (HA) and fulvic acid (FA). The direct and indirect IMI photodegradation was found to increase both with increasing pH and with deoxygenation of the reaction solutions. The excited triplet state of HS (3HS⁎) was mainly responsible for the photosensitized degradation of IMI according to the steady-state quenching and direct time-resolved experiments. The electron transfer interaction between 3HS⁎ and IMI was observed by laser flash photolysis (LFP) with bimolecular reaction rate constants of (4.9 ± 0.4) × 109 M−1 s−1. Evidence of electron transfer from IMI to 3HS⁎ was further demonstrated by the photoproduct analysis. The indirect photodegradation was triggered off in the side chain of IMI with the nonbonding nitrogen electron transferring to 3HS⁎, followed by hydroxylation, demethylation and cleavage of the side chain. Very important that HS photosystem does not lose its efficiency with decreasing of IMI concentration, meaning that the studied photosystem still be used at environmentally relevant concentrations of IMI. These results suggest that photodegradation could be an important attenuation pathway for IMI in HS-rich and anaerobic natural waters.

Hydroxyl radical oxidation of cyclic methylsiloxanes D4 ∼ D6 in aqueous phase.

Cyclic methylsiloxanes (CMS) were listed as candidates of substances of very high concerns in 2018 by the REACH. These compounds can enter environmental waters, and potentially cause harmful effects to aquatic organisms and human beings. Until now, reaction mechanisms of these pollutants with hydroxyl radicals (HO) in aqueous phase were unknown. In this study, reaction mechanisms of three typical CMS (D4 ∼ D6) with HO in aqueous phase were investigated by employing both UV/H2O2 experiments and density functional theoretical calculations. Bimolecular reaction rate constants (kHO·) of D4 ∼ D6 with HO were determined as kHO·(D4) = 8kHO·(D5) = 12kHO·(D6) = 6.6 × 108 L mol-1 s-1. Half-lives of HO oxiding D4 ∼ D6 ranged from 12 to 140 days at [HO] = 10-15 mol L-1 in sunlit surface water, and were comparable to (D4, D5) or much shorter (D6) than hydrolytic half-lives. The reactivity to HO decreased with the increasing size of siloxane ring in aqueous phase, in an order totally opposite to that in gaseous phase. Calculation results indicated that HO oxidation of the three CMS proceeded spontaneously through an exothermic H-abstraction process at the first step. Water molecules participated into H-abstraction of CMS and caused energy barrier of D5 higher than that of D4. Thus, H-bonds formed by water molecules were responsible for the reverse reactivity of CMS in aqueous phase. This work provided basic evidences suggesting environmental persistence of CMS in aqueous phase completely different from that in gaseous phase.

Assessing the contribution of hydroxylation species in the photochemical transformation of primidone (pharmaceutical)

Pharmaceutical and personal care products (PPCPs) are a group of emerging contaminants that have frequently been detected in aqueous environments. Phototransformation driven by solar irradiation is one of the most important natural processes for the elimination of PPCPs. In this study, primidone (PMD) was chosen as a model “photorefractory” compound. A series of experiments were conducted to assess if reactive intermediates (RIs), such as hydroxyl radical (HO), singlet oxygen (1O2), and triplet states of dissolved organic matter (3DOM⁎), inhibited or enhanced the photochemical transformation of PMD under simulated solar irradiation. The results indicate that HO plays a key role in the photodegradation of PMD and that dissolved oxygen can affect the degradation rate of PMD by promoting HO formation. Our results demonstrated that PMD can not only react with free HO (HO-free) but also react with lower-energy hydroxylation agents (HO-like). The contributions of HO-free and HO-like to PMD degradation in various dissolved organic matter (DOM) solutions were estimated by a methane-quenching experiment. The results indicated that the HO-like species were important in the photodegradation of “photorefractory” compounds. The bimolecular reaction rate constant of the reaction of free HO with PMD was measured as (5.21 ± 0.02) × 109 M−1 s−1 by using electron pulse radiolysis. Furthermore, PMD was used as a probe to estimate the steady-state concentration of HO-free in various DOM solutions. Using the multivariate statistical strategies of orthogonal projection to latent structures discriminant analysis (OPLS-DA) and hierarchical clustering, 28 photochemical transformation products (TPs) of PMD were successfully identified from the DOM matrix.

Photochemical formation of carbonate radical and its reaction with dissolved organic matters

The carbonate radical (CO3•−) is a strong oxidative radical that is generated via the reactions of HCO3−/CO32− with hydroxyl radical (HO•) or triplet states of dissolved organic matter (3DOM∗) in sunlit surface water. The bimolecular reaction rate constants of CO3•− with various DOM isolates (kCO3•−,DOM) were calculated as 15–239 (mg of C/L)−1 s−1 and were correlate to the bulk DOM properties, such as the content of phenolic moieties, the specific UV absorbance (SUVA), the E2/E3 value, and the fluorescence index (FI). The spectroscopic E2/E3 values was found to strongly correlated (R2 = 0.93) with kCO3•−,DOM, and an empirical equation was established. Our results also demonstrate that CO3•− is involved in the photobleaching of dissolved organic matter (DOM) and in particular reacts with electron-donor moieties, leading to faster decay rates at long wavelengths of UV–vis absorption. Furthermore, a model was developed to calculate the steady-state concentrations of CO3•− during DOM photobleaching. These results allow us to estimate the reactivity of DOM with CO3•− and to evaluate the role of CO3•− in sunlit surface water. It will also allow a better assessment of the concentration and utilization of CO3•− during the application of advanced oxidation processes.

Removal of methamphetamine by UV-activated persulfate: Kinetics and mechanisms

In this study, removal of methamphetamine (METH) was investigated by UV activated persulfate (PS), and the influence of key factors was evaluated. Results suggested that METH degradation followed pseudo-first order reaction kinetics. The combination of UV and persulfate (UV/PS) could completely degrade 100 μg/L of METH in 30 min with a PS dosage of 200 μM at pH 7. Both hydroxyl radical (OH) and sulfate radical (SO4−) were confirmed to contribute to the degradation of METH. The bimolecular reaction rate constants of METH with OH and SO4− were 7.91 × 109 and 3.29 × 109 M−1 s−1, respectively. The degradation rate constant of METH was proportional to the PS dosage (0–800 μM) and was high at neutral pH condition. The presence of inorganic anions significantly reduced METH degradation to different degrees, with the inhibitory effect order of Cl− > NO3− > HCO3−. The degradation efficiency of METH was suppressed by the presence of humic acid due to the effect of UV absorption and free radical quenching. The degradation intermediates and products were identified by UPLC-MS/MS and possible transformation pathways were proposed. Results suggested that the combination of UV/PS is a promising treatment technique for the removal of METH in the water environment.

Effect of Propanol-1 on the Reaction between Thiophenol and N,N'-Diphenyl-1,4-Benzoquinone Diimine in Chlorobenzene

It is found that the interaction between thiophenol and N,N '-diphenyl-1,4-benzoquinone diimine proceeds by two routes, one of which is a radical chain reaction and the other is a nonchain reaction between the reagents. The kinetic patterns of the reaction depend substantially on the concentration of propanol-1 in mixtures of it and chlorobenzene. It is shown that at 343 K, replacing chlorobenzene with propanol-1 results in an almost twentyfold increase in the total rate of the reaction. Increasing the concentration of propanol-1 raises the rate of both routes of the reaction, but that of the nonchain route grows more than that of the chain route. It is concluded that increasing the concentration of propanol-1 results in a simultaneous 20–30 times rise in the rate constants of both the stage of radical generation by the reaction between the reagents as well as the rate constant of the nonchain bimolecular reaction, and the chain length of the chain reaction is shortened. When chlorobenzene is replaced with propanol-1, the rate constant of the limiting stage of chain propagation (the reaction of quinone diimine with a phenylthiyl radical) is halved, due to the formation of H complexes between the π system of quinone diimine and the proton of propanol-1.

Oxidative degradation of iodinated X-ray contrast media (iomeprol and iohexol) with sulfate radical: An experimental and theoretical study

It has already been known that oxidative degradation of organochlorine (e.g. chlorophenols) is accompanied by de novo formation of new polychlorinated compounds, however, whether the similar scenario can happen during decomposition of iodine-containing pollutants is completely unknown. Here degradation of two iodinated X-ray contrast media (ICM), iomeprol and iohexol, by sulfate radical generated through Co(II)-mediated activation of peroxymonosulfate (PMS) was investigated. The influencing parameters, such as the initial concentrations of PMS and Co(II), the initial solution pH and natural water constituents were examined. The pseudo-first-order rate constant of iomeprol in the PMS/Co(II) system is more than twice of iohexol, with values of 7.7 × 10−2 and 3.5 × 10−2 min−1, respectively, indicating that iomeprol seems more susceptible to radicals attack than iohexol. The bimolecular rate constants for reaction of sulfate radical (SO4•−) with ICM were determined to be 1.8 × 1010 M−1 s−1 and 7.9 × 109 M−1 s−1 for iomeprol and iohexol, respectively. The low degrees of mineralization and identification of iodinated intermediates of iomeprol and iohexol indicate that the degradation of iomeprol and iohexol in the Co/PMS system were incomplete. A de novo formation of new polyiodinated compounds would not happen because most of released inorganic iodine were ultimately oxidized to iodate (IO3−), rather than the reactive iodinated agents. Based on the identified byproducts and quantum chemical calculation, eight main transformation pathways are proposed for the degradation of iomeprol and iohexol as follows: (a) deiodination; (b) hydrogen abstraction; (c) amide hydrolysis; (d) amino oxidation; (e) hydroxyl substituent; (f) transformed alkyl aromatic amides to aromatic carbamoyl; (g) dehydration; (h) oxidized primary alcohol groups to carboxyl groups.

Singlet Oxygen Photooxidation of Peptidic Oxazoles and Thiazoles.

Oxazoles and thiazoles are commonly found moieties in nonribosomal peptides (NRPs) and ribosomally synthesized post-translationally modified peptides (RiPPs), which are important biomolecules present in the environment and in natural waters. From previous studies, they seem susceptible to oxidation by singlet oxygen (1O2); therefore, we designed and synthesized model oxazole- and thiazole-peptides and measured their 1O2 bimolecular reaction rate constants, showing slow photooxidation under environmental conditions. We reasoned their stability through the electron-withdrawing effect of the carboxamide substituent. Reaction products were elucidated and support a reaction mechanism involving cycloaddition followed by a series of rearrangements. The first 1O2 bimolecular reaction rate constant for a RiPP, the thiazole-containing peptide Aerucyclamide A, was measured and found in good agreement with the model peptide's rate constant, highlighting the potential of using model peptides to study the transformations of other environmentally relevant NRPs and RiPPs.

A single‐ and multireference study on CH (X2Π) reaction with O2 ()

AbstractThis study focuses on the dynamics of the reaction of CH (X2Π) radicals with O2 () in the presence of N2, as the bath gas molecule. A general description of the reaction mechanism was investigated by employing molecular dynamics simulations with an implanted reactive force field under a realistic system that could account for both reactive and nonreactive collisions. This tool helped to provide an initial guess for the reaction mechanism to unravel some information about the potential reaction paths and secondary products. The initial guess was used to explore the detailed reaction mechanism quantum mechanically over the lowest doublet and quadruplet surfaces at the single‐reference level of CCSD(T)/aug‐cc‐pVTZ and the multireference level of CASPT2/aug‐cc‐pVTZ. The theoretical bimolecular reaction rate constants were computed by solving a master equation over the lowest doublet single‐ and multireference potential energy surfaces. The calculated rate constant for loss of the reactants and formation of the HCO and CO products declared noticeable agreement with the available experimental rate constants. HCO, CO, and CO2 are identified as the main products along with the following single‐reference (multireference)‐based product branching ratios at 450 K: [triangular 1CO2 + 2H and linear 1CO2 + 2H]: 69.1% (79.3%); 1CO + 2OH: 18.2% (15.0%); 2HCO + 3O: 12.7% (5.7%). Both single‐ and multireference calculations demonstrated reliable chemical kinetics results, in the context of the available experimental rate constants and resulted in fair agreement with the experimentally reported branching ratios.

Rate constants for the reaction of hydroxyl and sulfate radicals with organophosphorus esters (OPEs) determined by competition method

Advanced oxidation processes (AOPs), such as hydroxyl radical (•OH) and sulfate radical (•SO4-) mediated oxidation, are proved to be effective methods to remove the organophosphorus esters (OPEs) in wastewater effluents. However, few studies have reported about the bimolecular reaction rate constants between free radicals (•OH and •SO4-) and OPEs. This issue was solved by selecting three OPEs as model compounds, the oxidation of these OPEs in UV/H2O2 and UV/K2S2O8 process were studied. Tris(2-chloroethyl) phosphate (TCEP), tris(1-chloro-2-propyl) phosphate (TCPP), and tris(2,3-dichloropropyl) phosphate (TDCPP) can hardly be oxidized through direct irradiation methods using UV lamp, with the oxidation rate less than 30% after 7 h′ irradiation. However, TCEP, TCPP, and TDCPP undergo degradation via UV/H2O2 and UV/K2S2O8 processes easily, the oxidation rates increased with increasing H2O2 and K2S2O8 dosage. The oxidation rates of three OPEs have been studied using competition experiments in the UV/H2O2 and UV/K2S2O8 processes. The bimolecular reaction rate constants of TCEP, TCPP and TDCPP with •OH were 2.50 × 1010, 3.95 × 1010 and 2.94 × 1010 respectively; while •SO4- were 3.00 × 107, 1.82 × 107 and 2.06 × 107 respectively. Results showed that the simplified kinetic model involves only steady state concentration of free radicals and the molecular reaction rate contents are available for calculating the oxidation rates of OPEs in ultrapure water.

Bimolecular multistage diffusion-influenced chemical reactions proceeding from different sites in solutions. I. Rate constants.

General matrix algebraic equations for calculating rate constants of multistage diffusion-influenced reactions (involving bimolecular exchange reactions as elementary stages) in liquid solutions that proceed from different active sites in the immediate vicinity of the contact of reactants have been obtained on the basis of the kinematic approximation developed by the authors earlier. The equations make it possible to express rate constants of any multistage multisite bimolecular reaction between non-identical reactants in terms of the defined reaction constants and stationary Green functions averaged over reaction sites and completely determined by molecular motion of reactants or their molecular groups. The asymptotic behavior of these rate constants as they attain their steady-state values on completion of the transient stage is established. It is shown that it coincides with the corresponding exact time asymptote. Calculations are made with some specific two-stage (three-channel) bimolecular reactions as an example.

Eyringpy: A program for computing rate constants in the gas phase and in solution

AbstractEyringpy is a modular program for calculating thermochemical properties and rate constants for reactions in the gas phase and in solution. The code is written in Python and it has a user‐friendly interface and a simple input format. Unimolecular and bimolecular reactions with one and two products are supported. Thermochemical properties are estimated through canonical ensemble and rate constants are computed according to the transition state theory. One‐dimensional Wigner and Eckart tunneling corrections are also available. Rate constants of bimolecular reactions involving the formation of pre‐reactive complexes are also estimated. To compute rate constants in solution, Eyringpy uses the Collins–Kimball theory to include the diffusion‐limit, the Marcus theory for electron transfer processes, and the molar fractions to account for the solvent pH effect.

Environmental Risk Assessment of Emerging Contaminants Using Degradation Data

The degradation behavior of an emerging contaminant is a key factor in its environmental risk assessment. Existing risk assessment methods based on EC degradation data commonly neglect the time-varying volatility of the degradation, the possible correlations in degradation between different ECs, and the estimation errors. To fill the gaps, this paper proposes an EC risk assessment framework based on the Wiener process. We first focus on degradation data from competitive experiments, which are adopted to evaluate a useful risk indicator, i.e., the bimolecular rate constant of a degradation reaction. A two-dimensional Wiener process model is developed to capture the degradation behaviors of the target EC and a reference contaminant in the experiment. Point and interval estimations of desired quantities, including the rate constant and the degradation half-life, are developed. We further extend the model to the multivariate case, which is applicable to waste water treatment where multiple ECs degrade in a mixed solution. A risk indicator for the mixed solution is proposed, based on which a minimal treatment time can be determined. Both point and interval estimation procedures of the risk indicator and the minimal treatment time are proposed. Two EC degradation datasets are used to demonstrate the proposed methodologies. Supplementary materials accompanying this paper appear on-line.

Fluorescence Measurement of Kinetics of CheY Autophosphorylation with Small Molecule Phosphodonors.

The Escherichia coli chemotaxis protein CheY is a model receiver domain containing a native tryptophan residue that serves as a fluorescent probe for CheY autophosphorylation with small molecule phosphodonors. Here we describe fluorescence measurement of apparent bimolecular rate constants for reaction of wild type and mutant CheY with phosphodonors acetyl phosphate, phosphoramidate, or monophosphoimidazole. Step-by-step protocols to synthesize phosphoramidate (K+ salt) and monophosphoimidazole (Na+ salt), which are not commercially available, are provided. Key factors to consider in developing autophosphorylation assays for other response regulators are also discussed.

Aquatic photodegradation of clofibric acid under simulated sunlight irradiation: kinetics and mechanism analysis.

Clofibric acid is one of the most frequently detected pharmaceuticals in various aquatic environments. Photodegradation of clofibric acid in water under simulated sunlight was investigated. The effects of different initial concentrations, pH conditions and dissolved oxygen were examined. Photodegradation of clofibric acid followed a pseudo-first-order kinetics model, and the rate decreased gradually with the increasing initial concentration of clofibric acid. Dissolved oxygen inhibited the photodegradation of clofibric acid. As a result of varying reaction species of clofibric acid, the initial pH conditions greatly influenced its photodegradation. Quenching experiments showed that the self-sensitization process via ·OH and 1O2 occured during photodegradation of clofibric acid, and the bimolecular reaction rate constants of clofibric acid with ·OH and 1O2 were determined via the competition kinetics method to be 3.93(±0.20) × 108 and 2.38(±0.12) × 106 L mol−1 s−1, respectively. In addition, the transformation products of clofibric acid were identified by the UPLC-Q-TOF-MS microsystem, and eight products were detected. It is proposed that the photodegradation of clofibric acid occurred mainly via decarboxylation, dechlorination, ·OH addition and 1O2 attack reaction.

Photochemical Transformation of Four Ionic Liquid Cation Structures in Aqueous Solution.

Ionic liquids (ILs) are a new class of solvents expected to be used increasingly by the chemical industry in the coming years. Given their slow biodegradation and limited sorption affinities, IL cations have a high potential to reach aquatic environments. We investigated the fate of ILs in sunlit surface water by determining direct and indirect photochemical transformation rates of imidazolium, pyridinium, pyrrolidinium, and piperidinium cations. The photodegradation of all investigated IL cations was faster in solutions containing dissolved organic matter (DOM) than in ultrapure water, illustrating the importance of indirect photochemical processes. Experiments with model sensitizers and DOM isolates revealed that reactions with hydroxyl radicals dominated the transformation of tested IL cations. Bimolecular reaction rate constants with hydroxyl radicals ranged from (2.04 ± 0.37) × 109 to (8.47 ± 0.97) × 109 M-1 s-1 and showed an increase in rate constants with increasing carbon side-chain length. Consequently, average estimated half-lives of IL cations in sunlit surface water ranged from 32 ± 4 to 135 ± 25 days, highlighting the potential of IL cations to become persistent aquatic contaminants.

Development of Novel Chemical Probes for Examining Triplet Natural Organic Matter under Solar Illumination.

Excited triplet states of chromophoric dissolved organic matter (3CDOM*) are critical transient species in environmental photochemistry. In the present study, sorbic amine (2,4-hexadien-1-amine) and sorbic alcohol were employed as new probe molecules for triplet measurements and compared to the results measured from sorbic acid under identical conditions. Unlike sorbic acid, sorbic amine and sorbic alcohol were not directly photolyzed under solar irradiation. Photosensitized isomerization of the probes with the conjugated diene structure could yield four geometrical isomers. The separation and quantitative determination of the geometrical isomers were accomplished using HPLC and high-resolution NMR analyses. When photoirradiated Suwannee River natural organic matter (SRNOM) was employed as a source of 3CDOM*, significantly different photosensitized isomerization rates were observed for the diverse charged probes. The bimolecular reaction rate constants between 3SRNOM* and the probes were calculated as (0.42 ± 0.1) × 109 M-1 s-1 for sorbic acid, (1.1 ± 0.1) × 109 M-1 s-1 for sorbic alcohol, and (5.2 ± 0.4) × 109 M-1 s-1 for sorbic amine, respectively. The average apparent Φtriplet was (0.96 ± 0.03)% based on an irradiation range of 290 to 400 nm. We developed highly selective and efficient probes for triplet determination and elucidated the different reaction behaviors of these conjugated dienes containing different charged substituents within the photochemical energy transfer process.