Quantum Theory Of Atoms In Molecules Research Articles

Unveiling spectroscopic behaviour and molecular features (DFT studies) of Exemestane-maleic acid cocrystal as model multicomponent system

The present study aimed to investigate the Exemestane - maleic acid (Ex-Mal) cocrystal using Fourier-transform Raman (FT-Raman), Fourier-transform Infrared (FT-IR), Powder X-ray Diffraction (PXRD) and Differential Scanning Calorimeter (DSC) experimental techniques and quantum chemical calculations. Exemestane (Ex) is an irreversible aromatase inhibitor, clinically used for the treatment of postmenopausal women having primary or advanced breast cancer. Maleic acid (Mal), a dicarboxylic acid is found in many vegetables and fruits and is used as a food additive and sweetener. Solution crystallization of Ex and Mal was done in the generation of Ex-Mal cocrystal (1:1). PXRD and DSC analysis confirmed the successful generation of Ex-Mal Cocrystal. Intermolecular hydrogen bonding (O4-H12···O13 & C8-O3···H36) also suggested the formation of a multi-component system, Ex-Mal cocrystal (1:1), as the respective modes shifted in the vibrational (Raman & IR) spectra of cocrystal than the Ex. Further, the quantum theory of atoms in molecules (QTAIM) has been done to analyze the strength and nature of inter-/intra molecular hydrogen bonding. Natural bond orbital (NBO) analysis was performed to check the stabilization energy of the system. The frontier molecular orbital (FMO) analysis predicted that Ex-Mal cocrystal is more reactive and less stable than Ex. Molecular electrostatic potential (MEP) surface showed that electrophilic (C16-H36)/(O4-H12), and nucleophilic (C8=O3)/(C17=O13) reactive groups in Ex/Mal and Mal/Ex, respectively, neutralized after the formation of Ex-Mal cocrystal, confirming the presence of hydrogen bonding interactions (C16-H36∙∙∙O3=C8) and (C17=O13∙∙∙H12-O4). Molar Refractivity (MR) was calculated to check the drug-likeness behaviours of Ex-mal cocrystal. This study provided a comparison of experimental and theoretical results to understand the hydrogen bonding interactions and structural activity of the system.

Rationalizing the stability and noncovalent interactions of N-(benzo[d][1,3]dioxol-5-ylmethyl)-2-(methylthio)thiazole-4-carboxamide: Insights from X‐ray structure and QTAIM analysis

A novel thiazole derivative, N-(benzo[d][1,3]dioxol-5-ylmethyl)-2-(methylthio)thiazole-4-carboxamide was synthesized and the structural interpretations were accomplished unambiguously by single crystal X-ray diffraction study. Structure investigation revealed that the crystal packing is stabilized by CH…N, and NH…O intermolecular interactions. Hirshfeld surface analysis used to explore the quantitative details of noncovalent interactions which are responsible for the crystal packing. The 3D energy framework, interaction energies and lattice energy of the compound were computed. Density functional theory (DFT) calculation was also employed to study various physicochemical properties of the compound. Quantum theory of atoms in molecules (QTAIM) analysis have been performed to study the intra and intermolecular interactions present in the thiazole derivative and also validate with the experimental results.

Deciphering the adsorption and sensing performance of Al24N24 and B24N24 nanoclusters as a drug delivery system for nitrosourea anticancer drug: A DFT insight

Nanomaterials for drug detection are crucial in pharmaceutical research, especially in cancer therapy applications like nitrosourea. The purpose of this work was to examine the sensitivity of Al24N24 and B24N24 nanocages for the detection of nitrosourea by using density functional theory (DFT). Different analyses were performed such as adsorption energy (Eads) studies, frontier molecular orbitals (FMOs), natural bond orbitals (NBO), global indices of reactivity, UV-Vis studies, molecular electrostatic potential (MEP), non-covalent interaction (NCI), quantum theory of atoms in molecules (QTAIM) and sensor mechanism. The adsorption of nitrosourea on Al24N24 shows the highest values of adsorption energies with the value of −59.239, −55.986, and −51.019 kcal/mol for O/6m-AN, plan/6m-AN, and plan/8m-AN respectively. On the other hand, B24N24 complexes show fewer adsorption energies with the notable presence in plan/6m-BN, O/4m-BN, and plan/8m-BN that have the values of −11.064, −10.983, and −10.064 kcal/mol respectively. The energy gap of Al24N24 and B24N24 complexes decrease from 4.120 eV and 6.493 eV respectively for bare nanocage showing the potential of using these cages for nitrosourea (NUr) detection. FMOs studies reveal that among all designed complexes the lowest energy gap is present in O/4m-AN having a value of 2.913 eV. Moreover, global indices of reactivity suggest the increase in softness for Al24N24 complexes from 0.2427 eV for bare nanocage to 0.3433 eV for O/4m-AN. Similarly, the softness for B24N24 complexes also increases from 0.1540 eV for bare cage to 0.3012 eV for O/B-BN. Sensitivities for NUr in O/B-BN, O/4m-BN, plan/6m-BN and plan/8m-BN are 0.896, 0.870, 0.834 and 0.815 respectively. Moreover, the recovery time of NUr drug from BN nanocage is also very short as 7.53 × 10-12 s for O/N-BN. Topological analysis predict the non-covalent nature of interaction present between AN and BN nanocages. The electrical conductivity values are increased after the adsorption process. The highest electrical conductivity is present in AN complexes such as 4.41 × 1012 S/m for O/4m-AN due to low energy gap of 2.91 eV. The sensor mechanism reflects the high values of sensitivity for B24N24 complexes due to narrow energy gaps. Thus, B24N24 could be a fine candidate for the detection of nitrosourea and as a drug delivery vehicle for nitrosourea to treat cancer.

Exploration of Free Energy Surface of the Au10 Nanocluster at Finite Temperature.

The first step in comprehending the properties of Au10 clusters is understanding the lowest energy structure at low and high temperatures. Functional materials operate at finite temperatures; however, energy computations employing density functional theory (DFT) methodology are typically carried out at zero temperature, leaving many properties unexplored. This study explored the potential and free energy surface of the neutral Au10 nanocluster at a finite temperature, employing a genetic algorithm coupled with DFT and nanothermodynamics. Furthermore, we computed the thermal population and infrared Boltzmann spectrum at a finite temperature and compared it with the validated experimental data. Moreover, we performed the chemical bonding analysis using the quantum theory of atoms in molecules (QTAIM) approach and the adaptive natural density partitioning method (AdNDP) to shed light on the bonding of Au atoms in the low-energy structures. In the calculations, we take into consideration the relativistic effects through the zero-order regular approximation (ZORA), the dispersion through Grimme's dispersion with Becke-Johnson damping (D3BJ), and we employed nanothermodynamics to consider temperature contributions. Small Au clusters prefer the planar shape, and the transition from 2D to 3D could take place at atomic clusters consisting of ten atoms, which could be affected by temperature, relativistic effects, and dispersion. We analyzed the energetic ordering of structures calculated using DFT with ZORA and single-point energy calculation employing the DLPNO-CCSD(T) methodology. Our findings indicate that the planar lowest energy structure computed with DFT is not the lowest energy structure computed at the DLPN0-CCSD(T) level of theory. The computed thermal population indicates that the 2D elongated hexagon configuration strongly dominates at a temperature range of 50-800 K. Based on the thermal population, at a temperature of 100 K, the computed IR Boltzmann spectrum agrees with the experimental IR spectrum. The chemical bonding analysis on the lowest energy structure indicates that the cluster bond is due only to the electrons of the 6 s orbital, and the Au d orbitals do not participate in the bonding of this system.

Energetic features of H-bonded and antiparallel π-stacked supramolecular assemblies in pyrazolones: Experimental, computational and biological analyses

The work presented herein outlines a straightforward synthetic route to produce a series of pyrazolone compounds, which are significant in both coordination chemistry and pharmaceutical research. These heterocyclic compounds were thoroughly characterized using FTIR, 1H and 13C NMR spectroscopy, and their molecular structures were conclusively determined through X-ray crystallography. The resulting supramolecular architectures feature a variety of noncovalent interactions, including conventional NH…O and CH…O hydrogen bonds, CH…halogen contacts, CH…N interactions, and offset π-π stacking. Density Functional Theory (DFT) calculations, alongside Molecular Electrostatic Potential (MEP) surface analysis and Quantum Theory of Atoms in Molecules (QTAIM)/Non-Covalent Interaction (NCI) plot methodologies, were employed to probe these interactions further. This analysis highlighted the significance of both CH…O and NH…O hydrogen bonds and revealed the critical role of antiparallel π-stacking interactions, particularly within chlorophenyl and benzonitrile substituted pyrazolones, underscoring their stabilizing effects on the molecular structure. Biological assessment against urease enzyme unveiled compound 3a as the lead inhibitor with an IC50 value of 0.71 ± 0.09 μM and 31-folds strong inhibition than thiourea, thus making pyrazolone heterocycles as potential drug candidates.

Nature of the bond in intermetallic compounds

By studying 398 binary compounds crystallizing in five different crystal structures, it is shown that atomic radii of the elements RA and RB change to reach a constant radius ratio rA/rB(≡ϒ) in a cubic system. In systems of lower symmetry, a range of ϒ values, each corresponding to a certain axial ratio, is possible. Accurate charge values on atoms in solids are derived from the experimental internal radii rA and rB, using Shannon’s compilation of radii versus charge states for elements. It is found, for the first time, that charge transfer and radii change reverse their direction at the ϒ point. Electronegativity difference relative to its value at the ϒ point is recognized to correctly predict the charge transfer and radii changes with RA/RB. The deduced electronic structure of solids, based on spherical ions carrying partial charges, confirms that the metallic atom-pair bond is a resonating polar covalent bond. Identification of the number of electrons that contribute to cohesion and electrical conduction individually, allows successful prediction of electrical conductivity variation for transition metals and p-elements in the periodic table. From a knowledge of accurate valence of elements and of charge on the atoms, variation in the 197Au isomer shift of the gold compounds of CsCl type structure is predicted. The charges on atoms computed using the Quantum Theory of Atoms in Molecules (QTAIM) technique agree with those obtained in our work for compounds belonging to two of the structure types. For compounds belonging to the other three, the charge values obtained by the two methods do not agree. The disagreement correlates to not reckoning the role of the ϒ point. The effect of ϒ point is so fundamental and universal that most physical properties obtained by the secondary processing of primary DFT data, can be influenced by it.

Sensitive determination of Gabapentin in plasma sample using dispersive liquid-liquid microextraction coupled with ion mobility spectrometry

Gabapentin (GBP) is an anticonvulsant agent and its determination using a fast and simple method is challenging. In this research, a novel sensitive, and economical method for the fast determination of GBP in biological samples was developed. This method benefits from the advantages of ion mobility spectrometry (IMS) as a fast detection and separation system and dispersive liquid-liquid microextraction (DLLME) for the preconcentration/extraction of GBP. In the developed method (DLLME-IMS), Ag nanoparticles serve as modifiers. Moreover, the quantum theory of atoms in molecules (QTAIM) analysis was employed to investigate the interaction mechanism between GBP and Ag nanoparticles. Also, a delay time after the injection of the sample was applied to improve the method sensitivity. Under the optimum condition, the developed method showed a linear response over the concentration range of 0.3–12 μg mL−1 and a detection limit of 0.12 μg mL−1. Eventually, DLLME-IMS was successfully employed in plasma sample, and was validated against the HPLC method with UV detection as a reference method. The developed method will open up a new avenue for the development of effective, rapid, and simple analytical methods.

Investigating the potential of monocyclic B9N9 and C18 rings for the electrochemical sensing, and adsorption of carbazole-based anti-cancer drug derivatives: DFT-based first-principle study.

For the first time, the use of monocyclic rings C18 and B9N9 as sensors for the sensing of carbazole-based anti-cancer drugs, such as tetrahydrocarbazole (THC), mukonal (MKN), murrayanine (MRY), and ellipticine (EPT), is described using DFT simulations and computational characterization. The geometries, electronic properties, stability studies, sensitivity, and adsorption capabilities of C18 and B9N9 counterparts towards the selected compounds confirm that the analytes interact through active cavities of the C18 and B9N9 rings of the complexes. Based on the interaction energies, the sensitivity of surfaces towards EPT, MKN, MRY, and THC analytes is observed. The interaction energy of EPT@B9N9, MKN@B9N9, MRY@B9N9, and THC@B9N9 complexes are observed - 20.40, - 19.49, - 20.07, and - 18.27kcal/mol respectively which is more exothermic than EPT@C18, MKN@C18, MRY@C18, and THC@C18 complexes are - 16.37, - 13.97, - 13.96, and - 11.39kcal/mol respectively. According to findings from the quantum theory of atoms in molecules (QTAIM) and the reduced density gradient (RDG), dispersion forces play a significant role in maintaining the stability of these complexes. The electronic properties including FMOs, density of states (DOS), natural bond orbitals (NBO), charge transfer, and absorption studies are carried out. In comparison of B9N9 and C18, the analyte recovery time for C18 is much shorter (9.91 × 10-11 for THC@C18) than that for B9N9 shorter recovery time value of 3.75 × 10-9 for EPT@B9N9. These results suggest that our reported sensors B9N9 and C18 make it faster to detect adsorbed molecules at room temperature. The sensor response is more prominent in B9N9 due to its fine energy gap and high adsorption energy. Consequently, it is possible to think of these monocyclic systems as a potential material for sensor applications.

DFT insights into the electronic properties and gas sensing performance of C19X (X = C, N, and Si) nanocages for the detection of CO2, CO, N2, and H2 gases

The development of carbon nanocage-based sensors for the detection of toxic and pollutant gases has attracted significant attention from researchers. In this computational study, the interactions of CO2, CO, N2, and H2 gases with the C19X nanocages (X = C, N, and Si) were evaluated using the M062X/6-31G(d) level of density functional theory (DFT) calculations. The results demonstrated a reduction in the energy gap (Egap) across all studied systems, especially pronounced in the C19N and C19Si nanocages, compared to the complexes with a higher priority of the C19Si nanocages. The gas molecules were found to have weak adsorption in all the C20 nanocage complexes, while the adsorption of CO gas was more pronounced in the C19N and C19Si nanocages compared to the other gases studied. A quantum theory of atoms in molecule (QTAIM) analysis was conducted to examine the interactions and their features, through which the physical interactions that contribute to the formation of the complexes were identified. Further electrical characterizations revealed that the C19Si nanocage has a high sensitivity for the detection of CO gas, making it a promising sensor material. In conclusion, the engineered C19N and C19Si nanocages demonstrated significant improvements over the original C20 nanocage in terms of adsorption capabilities for CO2, CO, N2, and H2 gases, making them promising candidates for sensor applications.

Toxic gas removal using transition metal-decorated Cyclo[18]carbon: A first principles prevision

Carbon monoxide (CO), nitric oxide (NO), and ammonia (NH3) are highly toxic gases that are hazardous to human health and the environment. This study dives into the examination of interaction mechanism between transition metal-decorated Cyclo[18]carbon or C18TM (TM = Ni, Pd, Pt) nanoclusters and aforementioned gas molecules. The analysis of structural, electronic, topological, spectroscopic, and sensing properties, uncovers significant findings. The computed adsorption energies exhibit highly negative values. Notably, a substantial sensing response is observed, particularly in the context of NO adsorption over C18Ni and CO adsorption over C18Pd nanoclusters. Employing the Quantum Theory of Atoms in Molecules (QTAIM), we discern the strength of each interaction. Raman spectra analyses provide additional details regarding the vibrational aspects of these interactions. Our Non-Covalent Interaction (NCI) study effectively elucidates the mechanisms underlying van der Waals interactions. Evidently, the longer recovery times observed in our calculations, owing to the highly negative adsorption energies with −2.31 eV being the most negative value for CO molecule over C18Pt nanocluster and −1.09 eV value for NO over C18Pd being the least, suggest that C18TM nanoclusters are better suited for gas removal applications rather than rapid-response sensors.

Synthesis and structural investigation of salts of 2-amino-3-methylpyridine with carboxylic acid derivatives: an experimental and theoretical study.

The salts bis(2-amino-3-methylpyridinium) fumarate dihydrate, 2C6H9N2+·C4H2O22-·2H2O (I), and 2-amino-3-methylpyridinium 5-chlorosalicylate, C6H9N2+·C7H4ClO3- (II), were synthesized from 2-amino-3-methylpyridine with fumaric acid and 5-chlorosalicylic acid, respectively. The crystal structures of these salts were characterized by single-crystal X-ray diffraction, revealing protonation in I and II by the transfer of a H atom from the acid to the pyridine base. In the crystals of both I and II, N-H...O interactions form an R22(8) ring motif. Hirshfeld surface analysis distinguishes the interactions present in the crystal structures of I and II, and the two-dimensional (2D) fingerprint plot analysis shows the percentage contribution of each type of interaction in the crystal packing. The volumes of the crystal voids of I (39.65 Å3) and II (118.10 Å3) have been calculated and reveal that the crystal of I is more mechanically stable than II. Frontier molecular orbital (FMO) analysis predicts that the band gap energy of II (2.6577 eV) is lower compared to I (4.0035 eV). The Quantum Theory of Atoms In Molecules (QTAIM) analysis shows that the pyridinium-carboxylate N-H...O interaction present in I is stronger than the other interactions, whereas in II, the hydroxy-carboxylate O-H...O interaction is stronger than the pyridinium-carboxylate N-H...O interaction; the bond dissociation energies also confirm these results. The positive Laplacian [∇2ρ(r) > 0] of these interactions shows that the interactions are of the closed shell type. An in-silico ADME (Absorption, Distribution, Metabolism and Excretion) study predicts that both salts will exhibit good pharmacokinetic properties and druglikeness.

Novel series of hydrazones carrying pyrazole and triazole moiety: Synthesis, structural elucidation, quantum computational studies and antiviral activity against SARS-Cov-2

The novel series of hydrazones carrying both pyrazole and triazole moiety were synthesized and characterized using single crystal X-ray diffraction studies. It is found that the compound crystallizes in the triclinic system in the space group P1̅. Hirshfeld analysis was carried out to visualize the noncovalent intermolecular interactions which are responsible for molecular packing in the crystal. Further, density functional theory (DFT) calculations were used to calculate optimized molecular structure, stability, and a few of the quantum chemical parameters. Derived results are in good agreement with the experimentally obtained results. Analysis of frontier molecular orbitals (HOMO and LUMO) and their energy gap of the optimized structure revealed that the compound is stable in the gaseous state. Molecular electron densities, and electrostatic potential maps provide the reactive site and charge distribution of triazole group. Quantum theory of atoms in molecules (QTAIM) and reduced density gradient (RDG) analysis were carried out to explore the weak interactions present in the molecule. In addition, the synthesized compound was investigated as an inhibitor for SARS CoV-2 protease using in-silico molecular docking analysis to understand the mode of binding. The docking results showed the good binding score with Mpro protease 6LU7. Further, molecular dynamics (MD) were carried out for the best hit docked complexes.

Theory guided engineering of zeolite adsorbents for acaricide residue adsorption from the environment.

Zeolites have attracted attention for their potential in adsorbing environmental contaminants. However, contaminants, such as acaricides used extensively in livestock production to control ticks and mites, have received limited exploration regarding their adsorption onto zeolite surfaces. This study aimed to identify the most appropriate zeolite frameworks for the adsorption of acaricide residues, deduce the mechanism underlying the adsorption process, and evaluate the impact of surface modification on the adsorption capabilities of zeolites. Grand Canonical Monte Carlo (GCMC) was used to screen the entire zeolite database to analyze their adsorption properties, where the cloverite zeolite framework (CLO) exhibits the highest adsorption capacity (percentage weight, 54%). Machine learning was employed to rank structural feature importance on adsorption. Density and helium void fraction appeared to be the most important structural features. Thus, engineering these features is of utmost significance in harvesting the desired acaricides. The second step involved engineering the structural and electronic properties of the shortlisted zeolite frameworks via cation substitution with suitable atoms. DFT calculations involving natural bond orbital (NBO) analysis and quantum theory of atoms in molecules (QTAIM) have been done to understand the influence of cation substitution on the electronic structure.

Exploring the interaction of N-(benzothiazol-2-yl)pyrrolamide DNA gyrase inhibitors with the GyrB ATP-binding site lipophilic floor: A medicinal chemistry and QTAIM study

N-(Benzothiazole-2-yl)pyrrolamide DNA gyrase inhibitors with benzyl or phenethyl substituents attached to position 3 of the benzothiazole ring or to the carboxamide nitrogen atom were prepared and studied for their inhibition of Escherichia coli DNA gyrase by supercoiling assay. Compared to inhibitors bearing the substituents at position 4 of the benzothiazole ring, the inhibition was attenuated by moving the substituent to position 3 and further to the carboxamide nitrogen atom. A co-crystal structure of (Z)-3-benzyl-2-((4,5-dibromo-1H-pyrrole-2-carbonyl)imino)-2,3-dihydrobenzo[d]-thiazole-6-carboxylic acid (I) in complex with E. coli GyrB24 (ATPase subdomain) was solved, revealing the binding mode of this type of inhibitor to the ATP-binding pocket of the E. coli GyrB subunit. The key binding interactions were identified and their contribution to binding was rationalised by quantum theory of atoms in molecules (QTAIM) analysis. Our study shows that the benzyl or phenethyl substituents bound to the benzothiazole core interact with the lipophilic floor of the active site, which consists mainly of residues Gly101, Gly102, Lys103 and Ser108. Compounds with substituents at position 3 of the benzothiazole core were up to two orders of magnitude more effective than compounds with substituents at the carboxamide nitrogen. In addition, the 6-oxalylamino compounds were more potent inhibitors of E. coli DNA gyrase than the corresponding 6-acetamido analogues.

Investigation of sensing behavior of carbon nitride (C6N8) for detection of phosphine (PH3) and phosphorous trichloride (PCl3): A DFT approach

AbstractThis study shows the exploration of the gas‐sensing capabilities of C6N8 material against toxic gases like phosphine (PH3) and phosphorous trichloride (PCl3). First‐principles study based on M05‐2X/LanL2DZ (d, p) method was performed to investigate the interaction energy (Eint.), frontier molecular orbitals (FMOs), natural bonding orbital (NBO), noncovalent interactions (NCIs), partial density of states (PDOS), molecular electrostatic potential (MEP), and quantum theory of atoms in molecules (QTAIM) analyses. The interaction energy results showed that PCl3@C6N8 (−23.45 kJ/mol) is more stable than PH3@C6N8 (−14.79 kJ/mol). A considerable decrease in the HOMO‐LUMO band gap of C6N8 was observed as a result of its complexation with the analytes. QTAIM and NCI analyses indicated the presence of weak noncovalent interactions between C6N8 and gases (PH3 and PCl3). SAPT0 analysis was performed to quantify the NCIs. MEP maps of complexes revealed the localization of electronic density on C6N8. The little recovery time of complexes (determined at 300 K) showed that C6N8 can serve as a reusable sensing material against PH3 and PCl3. Our results demonstrate that the C6N8 surface is a reliable material for detecting phosphine and phosphorous trichloride gases.

Exploring the Nature of Chemical Bonding between Noble Gases and Hypercoordinate Group 13 Compounds: Beyond Boron.

In this article, we systematically study the stability and chemical bond nature of EH4Ng+ compounds (E = Al-Tl; Ng = He-Rn) at the CCSD(T) and ωB97XD levels of theory. Thermochemical calculations obtained by exploring different dissociation pathways show that these compounds could be stable at low temperatures. In addition, studied compounds have a strong E-Ng bond, which has been characterized using different methodologies such as quantum theory of atoms in molecules (QTAIM), natural bond orbital (NBO) theory, and natural energy decomposition analysis (NEDA). Results indicate that the nature of the chemical bond is predominantly covalent, especially in the case those including the heavier gases (Ar-Rn), occurring through a charge transfer from the noble gas to the group 13 element. However, the electrostatic contribution is also important in the stabilization of this bond. This study extends the universe of group 13 molecules containing noble gas bonds beyond boron and other elements from the second period.

Using Hybrid PDI-Fe3O4 Nanoparticles for Capturing Aliphatic Alcohols: Halogen Bonding vs. Lone Pair-π Interactions.

In this study, Fe3O4 nanoparticles (FeNPs) decorated with halogenated perylene diimides (PDIs) have been used for capturing VOCs (volatile organic compounds) through noncovalent binding. Concretely, we have used tetrachlorinated/brominated PDIs as well as a nonhalogenated PDI as a reference system. On the other hand, methanol, ethanol, propanol, and butanol were used as VOCs. Experimental studies along with theoretical calculations (the BP86-D3/def2-TZVPP level of theory) pointed to two possible and likely competitive binding modes (lone pair-π through the π-acidic surface of the PDI and a halogen bond via the σ-holes at the Cl/Br atoms). More in detail, thermal desorption (TD) experiments showed an increase in the VOC retention capacity upon increasing the length of the alkyl chain, suggesting a preference for the interaction with the PDI aromatic surface. In addition, the tetrachlorinated derivative showed larger VOC retention times compared to the tetrabrominated analog. These results were complemented by several state-of-the-art computational tools, such as the electrostatic surface potential analysis, the Quantum Theory of Atoms in Molecules (QTAIM), as well as the noncovalent interaction plot (NCIplot) visual index, which were helpful to rationalize the role of each interaction in the VOC···PDI recognition phenomena.

1D-Coordination Polymer of Copper(I) thiocyanate complex with metronidazole: Synthesis, crystal structure, Hirshfeld surface analysis, PXRD, Spectroscopic properties, MEP, QTAIM, π(CN)···tetrel interaction, RDG, and thermal analysis

Within 24 h of slow evaporation of the solution containing CuCl2·2H2O, metronidazole, and NH4SCN, a red-like crystalline Cu(I) complex titled [Cu(SCN)(mnz)]n (1), [where mnz = metronidazole; SCN = thiocyanate], was synthesized. The presence of SCN− during the synthesis induces reduction of the Cu(II) to Cu(I) giving rise to novel 1D coordination polymer. The compound was characterized by single crystal X-ray diffraction, powdered X-ray diffraction, spectroscopic proprieties, and Hirshfeld surface analysis. [Cu(SCN)(mnz)]n crystallizes in the monoclinic space group P21/c. The complex possesses a 1D layer structure constructed by linking the staircase-like [CuSCN]n chains. Intermolecular interactions in the crystals investigation via Hirshfeld surface analysis reveals the major contribution is from O···H/H···O interaction (22.9 %), which is due to the presence of hydrogen bonds of the O − H···O type. The thermal properties were investigated using DTA-TGA and DSC. The study comprises the interpretation of non-covalent interactions through Quantum Theory of Atoms in Molecules (QTAIM), Natural Bond Orbital (NBO) analyses, and Reduced Density Gradient (RDG). The results show the role of interactions between SCN− and mnz through multiple connections involving the oxygen, nitrogen, and sulfur lone pairs and π-bonds for constructing the unit cell. The non-covalent arrangements include very weak hydrogen bonds that cooperatively stabilize the crystal. Along with SCN− bridging copper atoms, growth in the ab plane is favored by an uncommon π···π interaction between SCN− and the imidazole ring of mnz. In this interaction, the π(SN) and π(CN) orbitals perturb the imidazole π(CN) orbital with energies of 0.36 and 0.22 kcal/mol, respectively. In the c direction, a hydrogen bond between the hydroxyl group and CH- fragment from different mnz molecules assists structure stabilization. It is accompanied by a rarely observed π(CN)···tetrel interaction, wherein SCN− donates π-electron density to the antibonding σ(CH) orbital of the methyl carbon.

A Spectroscopic and Computational Evaluation of Uranyl Oxo Engagement with Transition Metal Cations.

We report the synthesis and characterization of five novel Cd2+/UO22+ heterometallic complexes that feature Cd-oxo distances ranging from 78 to 171% of the sum of the van der Waals radii for these atoms. This work marks an extension of our previously reported Pb2+/UO22+ and Ag+/UO22+ complexes, yet with much more pronounced structural and spectroscopic effects resulting from Cd-oxo interactions. We observe a major shift in the U═O symmetric stretch and significant uranyl bond length asymmetry. The ρbcp values calculated using Quantum Theory of Atoms in Molecules (QTAIM) support the asymmetry displayed in the structural data and indicate a decrease in covalent character in U═O bonds with close Cd-oxo contacts, more so than in related compounds containing Pb2+ and Ag+. Second-order perturbation theory (SOPT) analysis reveals that O spx → Cd s is the most significant orbital overlap and U═O bonding and antibonding orbitals also contribute to the interaction (U═O σ/π → Cd d and Cd s → U═O σ/π*). The overall stabilization energies for these interactions were lower than those in previously reported Pb2+ cations, yet larger than related Ag+ compounds. Analysis of the equatorial coordination sphere of the Cd2+/UO22+ compounds (along with Pb2+/UO22+ complexes) reveals that 7-coordinate uranium favors closer, stronger Mn+-oxo contacts. These results indicate that U═O bond strength tuning is possible with judicious choice of metal cations for oxo interactions and equatorial ligand coordination.

Supramolecular assemblies involving unusual N(nitrile)∙∙∙π(fum) and nitrile-nitrile non-covalent contacts in fumarato and succinato bridged polymers of Co(II) and Ni(II): Experimental and theoretical studies

Two new Co(II) and Ni(II) coordination polymers viz. [Co(H2O)2(μ-fum)(3-CNpy)2]n (1) and {[Ni(H2O)2(μ-succ)(4-CNpy)2]·2H2O}n (2) (where, fum= fumarate, CNpy = cyanopyridine, succ = succinate) have been synthesized and characterized using single crystal XRD, elemental analysis, spectroscopic (IR and electronic) techniques and TGA. Compound 1 crystallizes as a fumarato bridged Co(II) polymer; whereas, compound 2 is a succinato bridged Ni(II) polymer. The presence of various non-covalent interactions in the compounds stabilizes the layered assemblies of the compounds. Antiparallel nitrile∙∙∙nitrile interactions are observed in both the crystal structures involving the nitrile moieties of coordinated CNpy which provide rigidity to the compounds. Further analysis reveals that the N-atom of –CN group of 3-CNpy in 1 is involved in unusual N(nitrile)∙∙∙π(fum) interactions with the π-electrons of the C=C bond of fum. Enclathrated (H2O)2 cores within the supramolecular host cavity of compound 2 provides additional reinforcement to the crystal structure. We have also carried out theoretical studies to analyze the π-stacking and H-bonding interactions present in the crystal structure of compound 1 using quantum theory of atoms-in-molecules (QTAIM), non-covalent interaction plot (NCI plot) and molecular electrostatic potential (MEP) surface analysis. The MEP value at the N-atom of the cyano group of 1 is negative and the value is neutral over the double bond of the fum; indicating the possibilities of formation of N(nitrile)∙∙∙π(fum) interactions. Energetic analysis suggests that antiparallel π-stacking observed between the 3-CNpy moieties in 1 is the most dominating force followed by N(nitrile)∙∙∙π(fum) interaction and finally the H-bonds.