Ion Trap Mass Spectrometer Research Articles

Gas-Phase Reactivity of Quinoline-Based Singlet Oxenium Cations.

Isomeric quinolyloxenium cations were generated in the gas phase in an ion trap mass spectrometer to explore their reactions. The structures of some products were identified via collision-activated dissociation experiments involving model compounds to demonstrate that they have the expected heavy atom connectivity. The lack of radical reactions suggests that the cations have closed-shell singlet electronic ground states. Calculations (CASPT2/CASSCF(16,14)/cc-pVTZ//CASSCF(16,14)/cc-pVTZ) predict that their closed-shell singlet (1A') ground states are lower in energy by ca. 25 kcal mol-1 than their lowest-lying excited states. All cations are reactive toward dimethyl disulfide, dimethyl sulfide, and allyl iodide and most toward water and moderately reactive toward cyclohexane, reflecting their strongly electrophilic nature. They form adducts with nucleophiles in exothermic reactions (ca. 50 kcal mol-1 for dimethyl sulfide) that can fragment or be stabilized via IR emission. Most water adducts spontaneously isomerize to lower-energy tautomers. The nucleophiles preferentially add to those carbon atoms in the benzene ring that have the greatest positive charge (but not the carbonyl carbon). The cations react with cyclohexane via hydride abstraction by the oxygen atom. This is the only reaction that initially involves the oxygen atom and hence reflects the formally positively charged, monovalent oxygen atom in these cations.

Dark resonance spectra of trapped ions under the influence of micromotion

We study the influence of micromotion on the spectrum of trapped ions with a lambda-type level scheme, leading to dark resonances due to coherent population trapping. We work with calcium ions trapped in a ring-shaped Paul trap, in which one can compensate excess micromotion for only one ion of the crystal. We observe that micromotion affects the shapes of the dark resonances and causes the appearance of “echoes” separated by intervals given by the drive frequency. We present a theoretical model that provides good fits to the measurements and can be used to estimate the amplitude of the micromotion modulation of the atomic motion. We estimate an effective temperature of the ions from the spectra and observe clear micromotion heating as well as impaired cooling for sufficiently large excess micromotion.

Ultrahigh Quality Factor of a Levitated Nanomechanical Oscillator.

A levitated nanomechanical oscillator under ultrahigh vacuum is highly isolated from its environment. It has been predicted that this isolation leads to very low mechanical dissipation rates. However, a gap persists between predictions and experimental data. Here, we levitate a silica nanoparticle in a linear Paul trap at room temperature, at pressures as low as 7×10^{-11} mbar. We measure a dissipation rate of 2π×69(22) nHz, corresponding to a quality factor exceeding 10^{10}, more than 2 orders of magnitude higher than previously shown. A study of the pressure dependence of the particle's damping and heating rates provides insight into the relevant dissipation mechanisms.

Calcium Ion as Quantum Bit in a Linear Paul Trap

يهدف هذا البحث الى دراسة ايون الكالسيوم كوحدة كمية في مصيدة بول الخطية، حيث يعتبر هذا الايون احد العناصر التي تستخدم في الكبت الكمي. اتبع البحث المنهج التجريبي وقسم الى مقدمة تعريفية بالموضوع واربعة مباحث وخاتمة، متناولا الاطار النظري والنموذج الحوسبي ومناقشة النتائج. أما الخاتمة فتضمنت النتائج ومن أهمها: تتحقق القيمة المثلى للدقة باختيار القيم المناسبة للمعلمات الفيزيائية، كما تتضمن هذه المعلمات زاوية سقوط الليزر مع محور المصيدة وترددها مع تردد مصيدة .Rabi

Plasma metabolomics identifies S-adenosylmethionine as a biomarker and potential therapeutic target for vascular aging in older adult males

Brachial-ankle pulse wave velocity (baPWV) is a noninvasive index of vascular aging. However, the metabolic profile underlying vascular aging has not yet been fully elucidated. The current study aimed to identify circulating markers of vascular aging as assessed by baPWV and to elucidate its mechanism from a metabolomic perspective in older adults. A total of 60 and 61 Chinese male participants aged ≥80 years were recruited to the metabolome and validation cohorts, respectively. The baPWV of participants was measured using an automatic waveform analyzer. Plasma metabolic profile was investigated using ultra-performance liquid chromatography coupled with triple quadrupole linear ion trap tandem mass spectrometry. Orthogonal partial least squares (OPLS) regression modeling established the association between metabolic profile and baPWV to determine important metabolites predictive of vascular aging. Additionally, an enzyme-linked immunosorbent assay was employed to validate the metabolites in plasma and culture media of vascular smooth muscle cells in vitro. OPLS modeling identified 14 and 22 metabolites inversely and positively associated with baPWV, respectively. These 36 biomarkers were significantly enriched in seven metabolite sets, especially in cysteine and methionine metabolism (p <0.05). Notably, among metabolites involved in cysteine and methionine metabolism, S-adenosylmethionine (SAM) level was inversely related to baPWV, with a significant correlation coefficient in the OPLS model (p <0.05). Furthermore, the relationship between SAM and vascular aging was reconfirmed in an independent cohort and at the cellular level in vitro. SAM was independently associated with baPWV after adjustments for clinical covariates (β = −0.448, p <0.001) in the validation cohort. In summary, plasma metabolomics identified an inverse correlation between SAM and baPWV in older males. SAM has the potential to be a novel biomarker and therapeutic target for vascular aging.

The Magnesium Dication and Water Synergistically Promote the Protonolysis of Two of the B-C Bonds in the Tetraphenylborate Anion.

Analytes are sampled from both solution phase and gas-phase environments during the ESI process, and thus, the mass spectrum that is measured can reflect both solution and gas-phase conditions. In the gas-phase regime, ion-molecule reactions can influence the types of ions that are observed. Herein, the synergistic effects of a Lewis acid (Mg2+) and background water are shown to lead to protonolysis of two of the B-C bonds of the tetraphenylborate ion in the gas phase, giving rise to different ions at different reaction times in ESI-MS/MS experiments in a linear ion trap mass spectrometer. At short reaction times (1 ms), the expected adduct [Mg(BPh4)]+ is observed. At 10 ms, [(HO)Mg(BPh3)]+ and [(HO)2Mg(BPh2)]+ are observed. At 100 ms, the water adducts [(HO)2Mg(BPh2)(H2O)]+ and [(HO)2Mg(BPh2)(H2O)2]+ appear, and these become the dominant ions at longer reaction times. DFT calculations provide a plausible explanation as to why only [(HO)Mg(BPh3)]+ and [(HO)2Mg(BPh2)]+ but not [(HO)3Mg(BPh)]+ are observed.

Liquid chromatography-mass spectrometry-based strategy for systematic profiling of chemical components and associated quantitative analysis of quality markers in Qi-Wei-Tong-Bi oral liquid.

Qi-Wei-Tong-Bi oral liquid (QWTB), a famous Chinese medicine preparation composed of seven crude drugs has a good therapeutic effect on rheumatoid arthritis and is widely used in China.However, its chemical composition and quality control have not been comprehensively and systematically investigated. In this study, high-performance liquid chromatography coupled with quadrupole time-of-flight mass spectrometry was employed for its chemical profiling. As a result, 100 components were chemically characterized. Additionally, high-performance liquid chromatography coupled with a quadrupole linear ion trap mass spectrometry method was developed to simultaneously quantify nine bioactive components (hyperoside, ononin, quercetin, sinomenine, magnoflorine, gallic acid, protocatechuic acid, monotropein, and cyclo-(Pro-Tyr)) in multiple-reaction monitoring mode. After successful validation in terms of linearity, precision, repeatability, and recovery, the assay method was applied for the determination of 10 batches of QWTB. The results showed that QWTB was enriched in sinomenine and magnoflorine with the highest amount up to hundreds or even thousands of µg/mL, while quercetin, ononin, cyclo-(Pro-Tyr), and hyperoside were much lower with the lowest content below 10µg/mL. This study work would help to reveal the chemical profiling and provide a valuable and reliable approach for quality evaluation and even pharmacodynamic material basis studies of QWTB.

Survey of the multi-stage mass spectrometry of common ionic liquid cations and some polyfluorinated ions

Ionic liquids are useful for many applications and the structural diversity as a class is ever increasing. Knowledge of gas-phase dissociation pathways can inform analytical method development for the characterization of novel syntheses, degradation products, or environmental contaminants, and can inform our knowledge of the fate of ionic liquid species in the gas phase (e.g., after ejection by electrospray spacecraft thrusters). In this work, the N-heterocyclic (NHC) ions:1-butyl-1-methylpiperidinium (BMPi), 1-methyl-1-propylpiperidinium (MPPi), 1-butyl-1-methylpyrrolidinium (BMPyr), 1-ethyl-1-methylpyrrolidinium (EMPyr), 1-butylpyridinium (BPy), and 1-Butyl-1-(3,3,4,4,5,5,6,6,7,7,8,8,8-tridecafluorooctyl) imidazolium (BFIm) were studied. An additional fluorinated anion, nonafluorobutanesulfonate (NFBS), was also studied. Collision-induced dissociation mass spectrometry (CID-MS), as MS2 and MS3 using an ion trap mass spectrometer and energy-resolved breakdown curves using a quadrupole time-of-flight mass spectrometer, were used to determine dissociation patterns. Assignment of proposed dissociation pathways were made based on the experimental results and complementary computational chemistry. It was observed that for aromatic NHCs, cleavage at the C–N bond was preferred, to generate alkene-based neutral losses. Non-aromatic NHCs typically generated both alkane- and alkene-based neutral losses. Breakdown curves, supported by theoretical thermodynamic calculations, suggest that the loss of the alkane is the favorable dissociation pathway. Additionally, some ring-opening and ring contraction reactions via C–C bond cleavage were observed in non-aromatic species, whereas the intact aromatic NHC is typically a stable terminal ion. The polyfluorinated imidazolium fragmented via the breaking of C–N, C–C, and C–F bonds. The fluorinated anion, NFBS, fragmented by C–C and C–S bond cleavage to generate fluoroalkene, sulfur dioxide, and sulfur trioxide neutral losses. Beyond these broad stroke findings, the dissociation pathways of the seven ionic liquid ions were mapped using evidence from MS3, breakdown curves, and computational chemistry together assigning product ions as either arising from competitive or sequential pathways and proposing tentative structures. Some of the ionic liquid ions showed class-based product ions which will be useful in analytical development for their characterization. Finally, these results were contextualized within previous literature reports on other ionic liquid species.

Measurement of the charge-to-mass ratio of particles trapped by the Paul trap for education

Paul traps are devices that confine particles using an alternating electric field and have been used in undergraduate experimental classes at universities. Owing to the requirement of a high voltage ( > 103 V), Paul traps are not used in middle and high schools. Therefore, we developed an all-in-one-type Paul trap, including a high-voltage transformer. The Paul trap can be equipped with two different types of electrode attachments, ring-type and linear-type, and the trap image can be observed using a built-in web camera. For example, the charge-to-mass ratio of particles was measured with different types of attachments, and reasonable values were obtained. These types of trap devices are currently used at several educational facilities in Japan.

Decarboxylation of fatty acids by ternary zinc cationic complexes studied by mass spectrometry and theoretical calculations

We have shown that fatty acids can be decarboxylated in the gas phase via collision-induced dissociation (CID) of ternary zinc complexes of the general formula [(L)Zn(OOCR)]+, where RC3H7, C6H13, C7H15, C17H35, C17H33, C17H31 and L = 1,10-phenanthroline or 2,2′:6′,2″-terpyridine. These complexes were formed by electrospray ionization of a solution mixture of zinc(II) salt, fatty acid, and the ligand. Two pathways were mapped for the resulting [(L)ZnR]+ organozinc ion: i) a gas-phase ion-molecule reaction with a neutral carboxylic acid R’COOH in the linear quadrupole ion trap resulted in the production of the alkane RH and formation of [(L)Zn(OOCR’)]+; ii) a second CID stage produced an alkene and the ion [(L)ZnH]+ which underwent a subsequent ion-molecule reaction with R’COOH to form [(L)Zn(OOCR’)]+ ion accompanied by the loss of H2. In the case of RR’ = C3H7 (butyric acid), both processes presented formal catalytic cycles with the overall equations C3H7COOHC3H8+ CO2 or C3H7COOHC3H6 + H2+ CO2. Theoretical DFT calculations provided the energetics of reactants/products as well as transition state energies and were in agreement with the experimental data. The work identifies Zn as a potential catalyst for deoxygenation of fatty acid with no fragmentation of the alkyl chain.

Quantum entanglement of ions for light dark matter detection

A detection scheme is explored for light dark matter, such as axion dark matter or dark photon dark matter, using a Paul ion trap system. We first demonstrate that a qubit, constructed from the ground and first excited states of vibrational modes of ions in a Paul trap, can serve as an effective sensor for weak electric fields due to its resonant excitation. As a consequence, a Paul ion trap allows us to search for weak electric fields induced by light dark matter with masses around the neV range. Furthermore, we illustrate that an entangled qubit system involving N ions can enhance the excitation rate by a factor of N2. The sensitivities of the Paul ion trap system to axion-photon coupling and gauge kinetic mixing can reach previously unexplored parameter space.

Engineering Artificial Atomic Systems of Giant Electric Dipole Moment.

The electric dipole moment (EDM) plays a crucial role in determining the interaction strength of an atom with electric fields, making it paramount to quantum technologies based on coherent atomic control. We propose a scheme for engineering the potential in a Paul trap to realize a two-level quantum system with a giant EDM formed by the motional states of a trapped electron. We show that, under realistic experimental conditions, our system exhibits enhanced EDMs compared to those attainable with Rydberg atoms, serving as a complementary counterpart in the megahertz (MHz) resonance-frequency range. Furthermore, we show that such artificial atomic dipoles can be efficiently initialized, read out, and coherently controlled, thereby providing a potential platform for quantum technologies such as ultrahigh-sensitivity electric-field sensing.

A versatile apparatus for simultaneous trapping of multiple species of ultracold atoms and ions to enable studies of low energy collisions and cold chemistry.

We describe an apparatus where many species of ultracold atoms can be simultaneously trapped and overlapped with many species of ions in a Paul trap. Several design innovations are made to increase the versatility of the apparatus while keeping the size and cost reasonable. We demonstrate the operation of a three-dimensional (3D) magneto-optical trap (MOT) of 7Li using a single external cavity diode laser. The 7Li MOT is loaded from an atomic beam, with atoms slowed using a Zeeman slower designed to work simultaneously for Li and Sr. The operation of a 3D MOT of 133Cs, loaded from a 2D MOT, is demonstrated, and provisions for MOTs of Rb and K in the same vacuum manifold exist. We demonstrate the trapping of 7Li+ and 133Cs+ at different settings of the Paul trap and their detection using an integrated time-of-flight mass spectrometer. We present results on low energy neutral-neutral collisions (133Cs-133Cs, 7Li-7Li, and 133Cs-7Li collisions) and charge-neutral collisions (133Cs+-133Cs and 7Li+-7Li collisions). We show evidence of sympathetic cooling of 7Li+ (133Cs+) due to collisions with the ultracold 7Li (133Cs).

Differentiating enantiomers by directional rotation of ions in a mass spectrometer

Conventional mass spectrometry does not distinguish between enantiomers, or mirror-image isomers. Here we report a technique to break the chiral symmetry and to differentiate enantiomers by inducing directional rotation of chiral gas-phase ions. Dual alternating current excitations were applied to manipulate the motions of trapped ions, including the rotation around the center of mass and macro movement around the center of the trap. Differences in collision cross section were induced, which could be measured by ion cloud profiling at high resolutions above 10,000. High-field ion mobility and tandem mass spectrometry analyses of the enantiomers were combined and implemented by using a miniature ion trap mass spectrometer. The effectiveness of the developed method was demonstrated with a variety of organic compounds including amino acids, sugars, and several drug molecules, as well as a proof-of-principle ligand optimization study for asymmetric hydrogenation.

A multi-reflection time-of-flight setup for the study of atomic clusters produced by magnetron sputtering

The Greifswald multi-reflection time-of-flight setup has been extended with a magnetron sputtering gas aggregation source for the production of atomic cluster ions with sizes ranging from a single to thousands of atoms. This source, combined with a newly added quadrupole mass filter and a linear Paul trap, opens up the possibility of many new atomic-cluster studies not feasible with the setup before. The new components and their interfacing with the previous setup are described, and benchmarking as well as the first experimental results are presented. The capability of the system to handle singly charged ions with masses of several ten thousand atomic mass units is demonstrated.

Correlation of the Charge Resonance Interaction with Cluster Conformations Probed by Electronic Spectroscopy of Dimer Radical Cations of CO2 and CS2 in a Cryogenic Ion Trap.

Radical cations of dimeric clusters of carbon dioxide/disulfide, [(CX2)2]+• (X = O and S), form strong intracluster bonds through charge resonance (CR) interactions. We herein performed electronic photodissociation spectroscopy of [(CX2)2]+• while regulating the temperature under ambient and cryogenic conditions using a quadrupole ion trap. Both ions exhibited broad band absorption in the near-infrared-visible light region; it is called the "CR band", as a measure of the strength of the CR interaction. Strikingly, this band underwent a noticeable blue shift upon cryogenic cooling for [(CS2)2]+• while not for [(CO2)2]+•. On the basis of quantum chemical calculations with a coupled cluster method, the band shift was attributed to the variations in the relative population of two energetically close conformers found for [(CS2)2]+•. This study highlights a strong correlation between CR interactions and conformation of the radical dimer cations, demonstrating the exceptional significance of cryogenic cooling in the chemistry of ionic molecular clusters.

Direct Performance of Triple-Stage Tandem Mass Spectrometry Analysis Using Dual-Direction Dipolar Excitation in a Digital Linear Ion Trap.

The ion trap mass spectrometer offers a unique advantage over other mass spectrometers by enabling multistage tandem mass spectrometry analysis with a single mass analyzer. It is employed to generate fragment ions through collision-induced dissociation (CID) usually by applying alternating current (AC) signals to a pair of electrodes for dipole excitation. The process of achieving double-stage tandem mass spectrometry analysis (MS/MS) in the mass spectrometer involves successive stages of injection, cooling, isolation, excitation, and scanning. For triple-stage tandem mass spectrometry analysis (MS/MS/MS), additional stages of isolation, cooling, and excitation need to be added based on the MS/MS analysis, resulting in a complex and time-consuming mass spectrometry workflow. In this study, a digital ion trap technology with the method of simultaneously applying dipole excitation signals to two pairs of electrodes in the ion trap was developed. This allows fragmentation of the precursor ion in one direction while exciting the first-generation product ions in the other direction, enabling direct acquisition of MS/MS/MS spectra. This approach simplifies the process of tandem mass spectrometry, as demonstrated by experimental studies on methamphetamine, which show that dual-direction excitation effectively reduces workflow and enhances the intensity of product ions. Additionally, the method of direct MS/MS/MS spectra achieved through dual-direction excitation in a digital ion trap mass spectrometer allows for a lower q value of the precursor ion owing to a pseudopotential well depth that is 1.648 times greater than that of a traditional sinusoidal ion trap. The experiments of analyzing high concentration n-butyl acetate and isobutyl acetate have shown that the implementation of MS/MS/MS analysis using dual-direction excitation can provide more mass spectral information and effectively distinguish between the two isomeric samples. The results of direct triple-stage spectra obtained by this technique for several typical volatile hazardous chemicals demonstrate the method's capability for rapid analysis and detection of such substances. In summary, the developed method of dual-directional excitation coupled with digital ion trap technology enables direct performance of triple-stage tandem mass spectrometry analysis, improving fragment ion intensities and providing more valuable mass spectral information. It offers advantages such as simplified workflows, faster analysis, and enhanced accuracy for analyzing compounds with low mass fragment ions.

SAM-SFM: High-Efficiency and High-Resolution Tandem Mass Spectrometry Enabled by Sinusoidal Amplitude Modulation of Multiple Sinusoidal Frequency-Modulated Waveforms.

In miniature ion trap mass spectrometry, achieving a balance between isolation resolution and efficiency is a formidable challenge. The presence of absorption curves causes target ions to inadvertently absorb energy from AC signal components near their resonant frequencies. To mitigate this issue, SAM-SFM waveforms introduce a parameter known as the decreasing factor. Unlike SWIFT waveforms, SAM-SFM's spectral profile intentionally departs from a rectangular window, adopting an arch-shaped excitation window to minimize the impact on target ions and improve ion isolation efficiency. SAM-SFM waveforms have the advantage of low computational complexity, enabling real-time computation using an embedded FPGA technology. Regardless of any parameter changes, the FPGA can consistently guarantee waveform output within 1 μs. This not only enhances throughput but also eliminates the need for a PC in miniature mass spectrometry devices. The performance of SAM-SFM has been validated on an improved "Brick" miniature ion trap mass spectrometer. Comparative experiments with SWIFT waveforms confirm the lossless unit-mass isolation capabilities of SAM-SFM. This waveform has the capability to simultaneously isolate multiple target ions, even allowing for the lossless isolation of ions with lower abundance within isotopic clusters, albeit at the cost of requiring extended isolation durations.

Carbon-Atom Exchange between [MC2]+ (M = Os and Ir) and Methane: on the Thermodynamic and Dynamic Aspects.

Gas-phase reactions of [OsC2]+ and [IrC2]+ with methane at ambient temperature have been studied using quadrupole-ion trap mass spectrometry combined with quantum chemical calculations. Both [OsC2]+ and [IrC2]+ undergo carbon-atom exchange reactions with methane. The associated mechanisms for the two systems are found to be similar. The differences in the rates of carbon isotope exchange reactions of methane with [MC2]+ (M = Os and Ir) are explained by several factors like the energy barrier for the initial H3C-H bond breaking processes, the molecular dynamics, orbital interactions, and the H-binding energies of the pivotal steps. Besides, the number of participating valence orbitals might be one of the keys to regulate the rate in the key step. The present findings may provide useful ideas and inspiration for designing similar processes.

Hollow-fiber liquid phase microextraction for determination of fluoxetine in human serum by nano-liquid chromatography coupled to high resolution mass spectrometry

Therapeutic drug monitoring (TDM) is a personalized care tool based on the determination of a target drug concentration in human serum. An antidepressant drug of interest for such investigations is fluoxetine (FXT), due to a severe impact of genetic polymorphisms on its metabolism. A bioanalytical method employed for TDM purposes must exhibit satisfactory selectivity and detectability, which becomes more difficult due to highly complex biological matrices. In this study, a highly selective bioanalytical method for the determination of FXT in human serum is proposed, which provides excellent clean-up efficiency based on a low cost hollow fiber liquid-phase microextraction (HF-LPME) sample preparation step and nano-liquid chromatography coupled to high-resolution mass spectrometry (nano-LC-HRMS). HF-LPME was performed using a two-phase “U” configuration, with 6 cm fiber, 20 µL of 1-octanol acting as supported liquid membrane, and ammonium hydroxide (pH 10) as the donor phase with NaCl (10 % m/v) and methanol (5 % v/v) as additives, requiring only 250 µL of the sample. The procedure was conducted for 30 min under a 750 rpm stirring rate. Gradient elution was carried out employing an acetonitrile–water as mobile phase, the composition of 30:70 to 100:00 (v/v) for 15 min, using formic acid 0.1 % (v/v) as an additive. MS1 was acquired in an Orbitrap mass analyzer, while MS2 was acquired in a linear trap quadrupole. Satisfactory linearity (Pearson’s r = 0.99709) was obtained for a concentration range of 0.02 to 2.5 µg mL−1, which is compatible with the therapeutic and toxic range for FXT. The developed method presents adequate precision (1.61 to 7.45 %) and accuracy (95 to 114 %) and allows the dilution of high concentration samples in a 1:4 ratio (v/v), enabling its application for forensic serum samples. To our knowledge, this is the first study reporting a method based on HF-LPME and nano-LC-HRMS with any analytical purpose, especially with a TDM focus.