To realize large-scale CO2 separation to prevent global warming, energy and space saving separation technologies are required. Flexible metal–organic frameworks (flexible MOFs) with gate-opening properties have been found to be promising adsorbents, but the unconventional sigmoidal shapes and hysteresis of the isotherms have hindered quantitative evaluation of their applications in separation processes. This paper is the first to evaluate ELM-11, a flexible MOF that exhibits sigmoidal isotherms with hysteresis, in a process model and quantify its advantages over a conventional adsorbent. Based on the experimental uptake data, isotherm models for adsorption and desorption were developed, and their parameters were estimated. The resulting isotherm models are incorporated into a rigorous dynamic model of partial differential algebraic equations (PDAEs) to simulate a vacuum pressure swing adsorption (VPSA) process to evaluate the process performance. Numerical challenges to solve the PDAEs, including sigmoidal and hysteresis isotherm models, were resolved with the proposed numerical approaches. Sensitivity analysis for feed pressure and temperature was performed to identify the optimal operating strategy. A comparison with a conventional adsorbent, zeolite 13X, showed that high selectivity and sigmoidal isotherms of ELM-11 give higher productivity and CO2 product purity exceeding 99% without rinse and purge operations as well as lower power consumption for the compressor and vacuum pump.