The beekeeping sector is increasingly focused on creating optimal and natural environments for honeybees to reduce dependence on external factors, especially given progressively hotter summers. Improving hive thermal conditions can enhance bee wellbeing and production. While pinewood hives are predominant, some have started using insulating materials like polystyrene. However, many synthetic materials, despite their excellent insulation properties, are incompatible with organic food production, requiring alternative solutions. This study compares the thermal insulation properties of various natural materials, including white and black agglomerated cork, wood fibres, and rock mineral wool. These materials are potentially compatible with organic food production. Additionally, the research evaluates cost-effective sensor networks to monitor bioclimatic variables in real time. Lab tests using a Langstroth-type hive with a controlled heat source were conducted, monitoring temperature and humidity inside and outside the hive. The results revealed that all selected materials provided similar thermal insulation, superior to a hive without insulation. This finding suggests that using natural materials can enhance hive thermal comfort (i.e., the material’s ability to maintain a stable internal temperature), thereby improving honeybee wellbeing and productivity in a manner compatible with organic food production.