For transition economies, urban management processes are also in transition, which also means a situational opportunity to apply an integrated approach to the implementation of innovative projects, in which economic and political, as well as social, socio-cultural and environmental directions of development can receive a positive stimulus. Purpose of the study is to analyze the structure of participatory budgeting projects on the continuum “science and education – environment”, in accordance with the methodological approach to justify the innovative development of the city (based on helix-modeling). The paper has outlined an approach to activation the principles of sustainable and inclusive development at the local level, on the example of the participatory budget of Kyiv city in Ukraine. At the methodological level, the stages of the evolution of helix-modeling to the quintuple level have been analyzed in detail, the results of which are proposed to be implemented in accelerating the transformation of the projects structure aimed at the development of economic, social and environmental aspects of citizens life, namely in the fields of education, science, culture, sports, ecology, etc. Analysis of the change in the structure of participatory budgeting in Kyiv for the period 2017-2019 allows us to talk about the optimistic transition scenario of the city and the country in whole to the real pace of achievement the Sustainable Development Goals 2030. Strengthening the current positive changes with the help of state support, as well as ensuring a sufficient responsible investment, allows at a project level to succeed in improving the sustainability of the city.