A model with a varying layer-depth structure tends to have excessive vertical diffusion but can accommodate a well-defined mixing height. It also requires a modified vertical wind field to minimize possible local accumulation or drainage of species mass. A model with a fixed layer-depth structure may require many layers to better resolve the mixing height and contains an explicit challenge to define the thickness of the lowest layer that carries most precursor emission sources. This challenge, also present implicitly in the varying layer-depth case, could be ad dressed only if well-resolved mixing information or the eddy diffusivity profile under realistic physical environments were available, especially at night and in the morning. The impact on air quality predictions of using a fixed layer-depth and a varying layer-depth structure in the Urban Airshed Model is compared. Under the given input information and existing model assumptions, the fixed layer-depth ap proach yields substantially higher hourly concentrations of NO, CO, and VOC in the lowest layer in isolated areas in the early morning than the varying layer-depth approach. When different spatial resolutions are used in the fixed layer-depth approach, the resulting spatial concentration distributions tend to be more similar between the different spatial resolutions than between a fixed layer-depth approach and the varying layer-depth approach. The fixed, 11-layer model tends to yield lower precursor concentrations than the fixed, 6-layer model in the morning. Insofar as emission control is concerned, because the location of the predicted peak O3 concentration tends to shift differently for the different model versions when NOx emissions are reduced, it becomes difficult to reveal a general pattern rather independent of the vertical layer structure. If we ignore the shift in location and time of the O3 peak, then it may be fortuitous that the relative changes in the predicted peaks appear rather consistent among the different model versions, especially for the 8-h O3 peak.