Firstly, in view of the uncertainty of electromagnetic pulse vulnerability assessment of engine system caused by limited experimental data and incomplete information, a grey Bayesian network model is proposed by introducing interval grey numbers in grey system theory to characterize the uncertainty of sensitivity threshold and fault logic relationship of engine system components, so as to improve the processing ability of Bayesian network for uncertain information. Secondly, taking broadband high-power microwave as an example, the interval grey number failure probability of engine system and the posterior failure probability of sensor interval grey number are calculated. The former represents the survivability of the engine system as a whole under strong electromagnetic pulse, and the latter reflects the vulnerability order of each sensor under the condition of engine system failure. The evaluation conclusion can provide a reference for the design of vehicle electromagnetic protection.