Simple SummaryIncreased public awareness of wetlands and the importance of their conservation stipulated various preservation or improvement projects. In 2012, riverine wetlands were created in the Nakdong River in Korea to replace those damaged or destroyed by the River Refurbishment Project, but they could not be maintained as functional wetlands, owing to the long-term neglect and lack of management. A previous survey detected various problems in these wetlands, including insufficient in/outflow function, shore instability, and difficulty in introducing appropriate water sources, which cause nutrient accumulation and algal blooms. The in/outflow functions of the mainstream and tributaries were hampered by soil and plant deposition. These chemical changes influenced the community composition of rotifers. In particular, three rotifer species—Brachionus, Keratella, and Trichocerca—were mainly distributed in wetlands with relatively high nutrient concentrations (total nitrogen and phosphorus). Therefore, the rotifer community can be used as an indicator of the nutritional status of a wetland, and the functional state of the wetland can be understood through continuous monitoring of rotifers.Hydrological characteristics of freshwater ecosystems are powerful determinants of the distribution of biological communities and changes in environmental factors. This study identified relationships between the wetland environment, rotifer community, and hydrological factors for 48 wetlands, to determine their impact on wetland conservation and management. Different hydrological factors produced different wetland environments, which influenced the rotifer community composition. The wetlands with “poor” “in/outflow function” and “shore stability” levels showed high conductivity, turbidity, depth, and concentrations of total nitrogen, total phosphorus, and chlorophyll a. In contrast, the dissolved oxygen levels and velocity were the highest in wetlands with “good” in/outflow function and shore stability variables. The nutritional status of each wetland affected the composition of the rotifer community. Some genera (Keratella, Brachionus, Anuraeopsis, Trichocerca, and Philodina) were found in wetlands with high concentrations of total nitrogen, total phosphorus, and chlorophyll a, and high turbidity and depth. In contrast, Ascomorpha and Ploesoma were found in wetlands with high dissolved oxygen levels and flow velocity. High densities of Lepadella, Lecane, and Testudinella were found in wetlands completely covered by macrophytes. The rotifer community distribution can be used to understand the trophic, current functional, and environmental status of wetlands.