Positron Emission Tomography Attenuation Correction Research Articles

Strategies for deep learning-based attenuation and scatter correction of brain 18 F-FDG PET images in the image domain.

Attenuation and scatter correction is crucial for quantitative positron emission tomography (PET) imaging. Direct attenuation correction (AC) in the image domain using deep learning approaches has been recently proposed for combined PET/MR and standalone PET modalities lacking transmission scanning devices or anatomical imaging. In this study, different input settings were considered in the model training to investigate deep learning-based AC in the image space. Three different deep learning methods were developed for direct AC in the image space: (i) use of non-attenuation-corrected PET images as input (NonAC-PET), (ii) use of attenuation-corrected PET images with a simple two-class AC map (composed of soft-tissue and background air) obtained from NonAC-PET images (PET segmentation-based AC [SegAC-PET]), and (iii) use of both NonAC-PET and SegAC-PET images in a Double-Channel fashion to predict ground truth attenuation corrected PET images with Computed Tomography images (CTAC-PET). Since a simple two-class AC map (generated from NonAC-PET images) can easily be generated, this work assessed the added value of incorporating SegAC-PET images into direct AC in the image space. A 4-fold cross-validation scheme was adopted to train and evaluate the different models based using 80 brain 18 F-Fluorodeoxyglucose PET/CT images. The voxel-wise and region-wise accuracy of the models were examined via measuring the standardized uptake value (SUV) quantification bias in different regions of the brain. The overall root mean square error (RMSE) for the Double-Channel setting was 0.157±0.08 SUV in the whole brain region, while RMSEs of 0.214±0.07 and 0.189±0.14 SUV were observed in NonAC-PET and SegAC-PET models, respectively. A mean SUV bias of 0.01±0.26% was achieved by the Double-Channel model regarding the activity concentration in cerebellum region, as opposed to 0.08±0.28% and 0.05±0.28% SUV biases for the network that uniquely used NonAC-PET or SegAC-PET as input, respectively. SegAC-PET images with an SUV bias of -1.15±0.54%, served as a benchmark for clinically accepted errors. In general, the Double-Channel network, relying on both SegAC-PET and NonAC-PET images, outperformed the other AC models. Since the generation of two-class AC maps from non-AC PET images is straightforward, the current study investigated the potential added value of incorporating SegAC-PET images into a deep learning-based direct AC approach. Altogether, compared with models that use only NonAC-PET and SegAC-PET images, the Double-Channel deep learning network exhibited superior attenuation correction accuracy.

Application of geometric shape-based CT field-of-view extension algorithms in an all-digital positron emission tomography/computed tomography system.

Computed tomography (CT)-based positron emission tomography (PET) attenuation correction (AC) is a commonly used method in PET AC. However, the CT truncation caused by the subject's limbs outside the CT field-of-view (FOV) leads to errors in PET AC. In order to enhance the quantitative accuracy of PET imaging in the all-digital DigitMI 930 PET/CT system, we assessed the impact of FOV truncation on its image quality and investigated the effectiveness of geometric shape-based FOV extension algorithms in this system. We implemented two geometric shape-based FOV extension algorithms. By setting the data from different numbers of detector channels on either side of the sinogram to zero, we simulated various levels of truncation. Specific regions of interest (ROI) were selected, and the mean values of these ROIs were calculated to visually compare the differences between truncated CT, CT extended using the FOV extension algorithms, and the original CT. Furthermore, we conducted statistical analyses on the mean and standard deviation of residual maps between truncated/extended CT and the original CT at different levels of truncation. Subsequently, similar data processing was applied to PET images corrected using original CT and those corrected using simulated truncated and extended CT images. This allowed us to evaluate the influence of FOV truncation on the images produced by the DigitMI 930 PET/CT system and assess the effectiveness of the FOV extension algorithms. Truncation caused bright artifacts at the CT FOV edge and a slight increase in pixel values within the FOV. When using truncated CT data for PET AC, the PET activity outside the CT FOV decreased, while the extension algorithm effectively reduced these effects. Patient data showed that the activity within the CT FOV decreased by 60% in the truncated image compared to the base image, but this number could be reduced to at least 17.3% after extension. The two geometric shape-based algorithms effectively eliminate CT truncation artifacts and restore the true distribution of CT shape and PET emission data outside the FOV in the all-digital DigitMI 930 PET/CT system. These two algorithms can be used as basic solutions for CT FOV extension in all-digital PET/CT systems.

Ultra-low-dose CT for attenuation correction: dose savings and effect on PET quantification for protocols with and without tin filter

BackgroundUltra-low-dose (ULD) computed tomography (CT) scans should be used when CT is performed only for attenuation correction (AC) of positron emission tomography (PET) data. A tin filter can be used in addition to the standard aluminium bowtie filter to reduce CT radiation dose to patients. The aim was to determine how low CT doses can be, when utilised for PET AC, with and without the tin filter, whilst providing adequate PET quantification.MethodsA water-filled NEMA image quality phantom was imaged in three configurations with 18F-FDG: (1) water only (0HU); (2) with cylindrical insert containing homogenous mix of sand, flour and water (SFW, approximately 475HU); (3) with cylindrical insert containing sand (approximately 1100HU). Each underwent one-bed-position (26.3 cm) PET-CT comprising 1 PET and 13 CT acquisitions. CT acquisitions with tube current modulation were performed at 120 kV/50 mAs-ref (reference standard), 100 kV/7 mAs-ref (standard ULDCT for PET AC protocol), Sn140kV (mAs range 7–50-ref) and Sn100kV (mAs range 12–400-ref). PET data were reconstructed with μ-maps provided by each CT dataset, and PET activity concentration measured in each reconstruction. Differences in CT dose length product (DLP) and PET quantification were determined relative to the reference standard.ResultsAt each tube voltage, changes in PET quantification were greater with increasing density and reducing mAs. Compared with the reference standard, differences in PET quantification for the standard ULDCT protocol for the three phantoms were ≤ 1.7%, with the water phantom providing a DLP of 7mGy.cm. With tin filter at Sn100kV, differences in PET quantification were negligible (≤ 1.2%) for all phantoms down to 50mAs-ref, proving a DLP of 2.8mGy.cm, at 60% dose reduction compared with standard ULDCT protocol. Below 50mAs-ref, differences in PET quantification were > 2% for at least one phantom (2.3% at 25mAs-ref in SFW; 6.4% at 12mAs-ref in sand). At Sn140kV/7mAs-ref, quantification differences were ≤ 0.6% in water, giving 3.8mGy.cm DLP, but increased to > 2% at bone-equivalent densities.ConclusionsCT protocols for PET AC can provide ultra-low doses with adequate PET quantification. The tin filter can allow 60–87% lower dose than the standard ULDCT protocol for PET AC, depending on tissue density and accepted change in PET quantification.

Pre-acquired CT-based attenuation correction with automated headrest removal for a brain-dedicated PET system.

Attenuation correction (AC) is essential for quantitative positron emission tomography (PET) images. Attenuation coefficient maps (μ-maps) are usually generated from computed tomography (CT) images when PET-CT combined systems are used. If CT has been performed prior to PET imaging, pre-acquired CT can be used for brain PET AC, because the human head is almost rigid. This pre-acquired CT-based AC approach is suitable for stand-alone brain-dedicated PET, such as VRAIN (ATOX Co. Ltd., Tokyo, Japan). However, the headrest of PET is different from the headrest in pre-acquired CT images, which may degrade the PET image quality. In this study, we prepared three different types of μ-maps: (1) based on the pre-acquired CT, where namely the headrest is different from the PET system (μ-map-diffHr); (2) manually removing the headrest from the pre-acquired CT (μ-map-noHr); and (3) artificially replacing the headrest region with the headrest of the PET system (μ-map-sameHr). Phantom images by VRAIN using each μ-map were investigated for uniformity, noise, and quantitative accuracy. Consequently, only the uniformity of the images using μ-map-diffHr was out of the acceptance criteria. We then proposed an automated method for removing the headrest from pre-acquired CT images. In comparisons of standardized uptake values in nine major brain regions from the 18F-fluoro-2-deoxy-D-glucose-PET of 10 healthy volunteers, no significant differences were found between the μ-map-noHr and the μ-map-sameHr. In conclusion, pre-acquired CT-based AC with automated headrest removal is useful for brain-dedicated PET such as VRAIN.

Deep-learning-based methods of attenuation correction for SPECT and PET

Attenuation correction (AC) is essential for quantitative analysis and clinical diagnosis of single-photon emission computed tomography (SPECT) and positron emission tomography (PET). In clinical practice, computed tomography (CT) is utilized to generate attenuation maps (μ-maps) for AC of hybrid SPECT/CT and PET/CT scanners. However, CT-based AC methods frequently produce artifacts due to CT artifacts and misregistration of SPECT-CT and PET-CT scans. Segmentation-based AC methods using magnetic resonance imaging (MRI) for PET/MRI scanners are inaccurate and complicated since MRI does not contain direct information of photon attenuation. Computational AC methods for SPECT and PET estimate attenuation coefficients directly from raw emission data, but suffer from low accuracy, cross-talk artifacts, high computational complexity, and high noise level. The recently evolving deep-learning-based methods have shown promising results in AC of SPECT and PET, which can be generally divided into two categories: indirect and direct strategies. Indirect AC strategies apply neural networks to transform emission, transmission, or MR images into synthetic μ-maps or CT images which are then incorporated into AC reconstruction. Direct AC strategies skip the intermediate steps of generating μ-maps or CT images and predict AC SPECT or PET images from non-attenuation-correction (NAC) SPECT or PET images directly. These deep-learning-based AC methods show comparable and even superior performance to non-deep-learning methods. In this article, we first discussed the principles and limitations of non-deep-learning AC methods, and then reviewed the status and prospects of deep-learning-based methods for AC of SPECT and PET.

Deep learning-based attenuation map generation with simultaneously reconstructed PET activity and attenuation and low-dose application

Objective. In PET/CT imaging, CT is used for positron emission tomography (PET) attenuation correction (AC). CT artifacts or misalignment between PET and CT can cause AC artifacts and quantification errors in PET. Simultaneous reconstruction (MLAA) of PET activity (λ-MLAA) and attenuation (μ-MLAA) maps was proposed to solve those issues using the time-of-flight PET raw data only. However, λ-MLAA still suffers from quantification error as compared to reconstruction using the gold-standard CT-based attenuation map (μ-CT). Recently, a deep learning (DL)-based framework was proposed to improve MLAA by predicting μ-DL from λ-MLAA and μ-MLAA using an image domain loss function (IM-loss). However, IM-loss does not directly measure the AC errors according to the PET attenuation physics. Our preliminary studies showed that an additional physics-based loss function can lead to more accurate PET AC. The main objective of this study is to optimize the attenuation map generation framework for clinical full-dose 18F-FDG studies. We also investigate the effectiveness of the optimized network on predicting attenuation maps for synthetic low-dose oncological PET studies. Approach. We optimized the proposed DL framework by applying different preprocessing steps and hyperparameter optimization, including patch size, weights of the loss terms and number of angles in the projection-domain loss term. The optimization was performed based on 100 skull-to-toe 18F-FDG PET/CT scans with minimal misalignment. The optimized framework was further evaluated on 85 clinical full-dose neck-to-thigh 18F-FDG cancer datasets as well as synthetic low-dose studies with only 10% of the full-dose raw data. Main results. Clinical evaluation of tumor quantification as well as physics-based figure-of-merit metric evaluation validated the promising performance of our proposed method. For both full-dose and low-dose studies, the proposed framework achieved <1% error in tumor standardized uptake value measures. Significance. It is of great clinical interest to achieve CT-less PET reconstruction, especially for low-dose PET studies.

TCGAN: a transformer-enhanced GAN for PET synthetic CT.

Multimodal medical images can be used in a multifaceted approach to resolve a wide range of medical diagnostic problems. However, these images are generally difficult to obtain due to various limitations, such as cost of capture and patient safety. Medical image synthesis is used in various tasks to obtain better results. Recently, various studies have attempted to use generative adversarial networks for missing modality image synthesis, making good progress. In this study, we propose a generator based on a combination of transformer network and a convolutional neural network (CNN). The proposed method can combine the advantages of transformers and CNNs to promote a better detail effect. The network is designed for positron emission tomography (PET) to computer tomography synthesis, which can be used for PET attenuation correction. We also experimented on two datasets for magnetic resonance T1- to T2-weighted image synthesis. Based on qualitative and quantitative analyses, our proposed method outperforms the existing methods.

DeTransUnet: attenuation correction of gated cardiac images without structural information

Objective. Myocardial perfusion imaging (MPI) with positron emission tomography (PET) is a non-invasive imaging method, and it is of great significance to the diagnosis and prognosis of coronary heart disease. Attenuation correction (AC) for PET images is a necessary step for further quantitative analysis. In order not to use magnetic resonance (MR) or computed tomography (CT) images for AC, this work proposes DeTransUnet to obtain AC PET images directly from no-attenuation corrected (NAC) PET images. Approach. The proposed DeTransUnet is a 3D structure which combines the multi-scale deformable transformer layers and the 3D convolutional neural network (CNN). And it integrates the advantages of transformer with long-range dependence and CNN suitable for image calculation. The AC images using CT images for AC and scatter correction (SC) and are considered as training labels, while the NAC images are reconstructed without AC and SC. Standard uptake value (SUV) values are calculated for both NAC and AC images to exclude the influence of weight and injection dose. With NAC SUV images as the inputs of the DeTransUnet, the outputs of DeTransUnet are AC SUV images. Main results. The proposed DeTransUnet was performed on an MPI gated-PET dataset, and the results were compared with Unet2D and Unet2.5D. The metrics of the whole image and the left ventricular myocardium show that the proposed method has advantages over other deep learning methods. Significance. The proposed DeTransUnet is a novel AC framework that does not require CT or MR images. It can be used as an independent AC method on PET/MR instrument. In addition, when CT images contain defects or cannot be registered with PET images on PET/CT instrument, DeTransUnet is able to repair the defects and keep consistent with the NAC images.

Evaluation of applying space-variant resolution modeling to attenuation correction in PET

Attenuation correction aims to recover the underestimated tracer uptake and improve the image contrast recovery in positron emission tomography (PET). However, traditional ray-tracing-based projection of attenuation maps is inaccurate as some physical effects are not considered, such as finite crystal size, inter-crystal penetration and inter-crystal scatter. In this study, we evaluated the effects of applying resolution modeling (RM) to attenuation correction by implementing space-variant RM to complement physical effects which are usually omitted in the traditional projection model. We verified this method on a brain PET scanner developed by our group, in both Monte Carlo simulation and real-world data, in comparison with space-invariant Gaussian RM, average-depth-of-interaction, and multi-ray tracing methods. The results indicate that the space-variant RM is superior in terms of artifacts reduction and contrast recovery.

Data-driven gated CT: An automated respiratory gating method to enable data-driven gated PET/CT.

The accuracy of positron emission tomography (PET) quantification and localization can be compromised if a misregistered computed tomography (CT) is used for attenuation correction (AC) in PET/CT. As data-driven gating (DDG) continues to grow in clinical use, these issues are becoming more relevant with respect to solutions for gated CT. In this work, a new automated DDG CT method was developed to provide average CT and DDG CT for AC of PET and DDG PET, respectively. An automatic DDG CT was developed to provide the end-expiratory (EE) and end-inspiratory (EI) phases of images from low-dose cine CT images, with all phases being averaged to generate an average CT. The respiratory phases of EE and EI were determined according to lung region Hounsfield unit (HU) values and body outline contours. The average CT was used for AC of baseline PET and DDG CT at EE phase was used for AC of DDG PET at the quiescent or EE phase. The EI and EE phases obtained with DDG CT were used for assessing the magnitude of respiratory motion. The proposed DDG CT was compared to two commercial CT gating methods: (1) 4D CT (external device based) and (2) D4D CT (DDG based) in 38 patient datasets with respect to respiratory phase image selection, lung HU, lung volume, and image artifacts. In a separate set of twenty consecutive PET/CT studies containing a mix of 18 F-FDG, 68 Ga-Dotatate, and 64 Cu-Dotatate scans, the proposed DDG CT was compared with D4D CT for impacts on registration and quantification in DDG PET/CT. In the EE phase, the images selected by DDG CT and 4D CT were identical 62.5% ± 21.6% of the time, whereas DDG CT and D4D CT were 6.5% ± 9.7%, and 4D CT and D4D CT were 8.6% ± 12.2%. These differences in EE phase image selection were significant (p < 0.0001). In the EI phase, the images selected by DDG CT and 4D CT were identical 68.2% ± 18.9% of the time, DDG CT and D4D CT were 63.9% ± 18.8%, and 4D CT and D4D CT were 61.2% ± 19.8%. These differences were not significant. The mean lung HU and volumes were not statistically different (p > 0.1) among the three methods. In some studies, DDG CT was better than D4D or 4D CT in the appropriate selection of the EE and EI phases, and D4D CT was found to reverse the EE and EI phases or not select the correct images by visual inspection. A statistically significant improvement of DDG CT over D4D CT for AC of DDG PET was also demonstrated with PET quantification analysis. When irregular breath cycles were present in the cine CT, DDG CT could be used to replace average CT for the improved AC of baseline PET. A new automatic DDG CT was developed to tackle the issues of misregistration and tumor motion in PET/CT imaging. DDG CT was significantly more consistent than D4D CT in selecting the EE phase images as the clinical standard of 4D CT. When compared to both commercial gated CT methods of 4D CT and D4D CT, DDG CT appeared to be more robust in the lower lung and upper diaphragm regions where misregistration and tumor motion often occur. DDG CT offered improved AC for DDG PET relative to D4D CT. In cases with irregular respiratory motion, DDG CT improved AC over average CT for baseline PET. The new DDG CT provides the benefits of 4D CT without the need for external device gating.

MR-based truncation correction using an advanced HUGE method to improve attenuation correction in PET/MR imaging of obese patients.

Truncation artifacts in the periphery of the magnetic resonance (MR) field-of-view (FOV) and thus, in the MR-based attenuation correction (AC) map, may hamper accurate positron emission tomography (PET) quantification in whole-body PET/MR, which is especially problematic in patients with obesity with overall large body dimensions. Therefore, an advanced truncation correction (TC) method to extend the conventional MR FOV is needed. The extent of MR-based AC-map truncations in obese patients was determined in a dataset including n=10 patients that underwent whole-body PET/MR exams. Patient inclusion criteria were defined as BMI>30kg/m2 and body weight>100kg. Truncations in PET/MR patients with obesity were quantified comparing the MR-based AC-map volume to segmented non-AC PET data, serving as the reference body volume without truncations to demonstrate the need of improved TC. The new method implemented in this study, termed "advanced HUGE," was modified and extended from the original HUGE method by Blumhagen etal. in order to provide improved TC across the entire axial MR FOV and to unlock new clinical applications of PET/MR. Advanced HUGE was then systematically tested in PET/MR NEMA phantom measurements. Relative differences between computed tomography (CT) AC PET data of the phantom setup (reference) and MR-based Dixon AC, respectively Dixon + advanced HUGE AC, were calculated. The applicability of the method for advanced TC was then demonstrated in first MR-based measurements in healthy volunteers. It was found that the MR-based AC maps of obese patients often reveal truncations in the anterior-posterior direction. Especially, the abdominal region could benefit from improved TC, where maximal relative differences in the AC-map volume up to -17% were calculated. Applying advanced HUGE to improve the MR-based AC in PET/MR, PET quantification errors in the large-volume phantom setup could be considerably reduced from average -18.6% (Dixon AC) to 4.6% compared to the CT AC reference. Volunteer measurements demonstrate that formerly missing AC-map volume in the Dixon-VIBE AC-map could be added due to advanced HUGE in the anterior-posterior direction and thus, potentially improves AC in PET/MR. The advanced HUGE method for truncation correction considerably reduces truncations in the anterior-posterior direction demonstrated in phantom measurements and healthy volunteers and thus, further improves MR-based AC in PET/MR imaging.

A review on AI in PET imaging.

Artificial intelligence (AI) has been applied to various medical imaging tasks, such as computer-aided diagnosis. Specifically, deep learning techniques such as convolutional neural network (CNN) and generative adversarial network (GAN) have been extensively used for medical image generation. Image generation with deep learning has been investigated in studies using positron emission tomography (PET). This article reviews studies that applied deep learning techniques for image generation on PET. We categorized the studies for PET image generation with deep learning into three themes as follows: (1) recovering full PET data from noisy data by denoising with deep learning, (2) PET image reconstruction and attenuation correction with deep learning and (3) PET image translation and synthesis with deep learning. We introduce recent studies based on these three categories. Finally, we mention the limitations of applying deep learning techniques to PET image generation and future prospects for PET image generation.

Lutetium background radiation in total-body PET-A simulation study on opportunities and challenges in PET attenuation correction.

The current generation of total-body positron emission tomography (PET) scanners offer significant sensitivity increase with an extended axial imaging extent. With the large volume of lutetium-based scintillation crystals that are used as detector elements in these scanners, there is an increased flux of background radiation originating from 176Lu decay in the crystals and higher sensitivity for detecting it. Combined with the ability of scanning the entire body in a single bed position, this allows more effective utilization of the lutetium background as a transmission source for estimating 511 keV attenuation coefficients. In this study, utilization of the lutetium background radiation for attenuation correction in total-body PET was studied using Monte Carlo simulations of a 3D whole-body XCAT phantom in the uEXPLORER PET scanner, with particular focus on ultralow-dose PET scans that are now made possible with these scanners. Effects of an increased acceptance angle, reduced scan durations, and Compton scattering on PET quantification were studied. Furthermore, quantification accuracy of lutetium-based attenuation correction was compared for a 20-min scan of the whole body on the uEXPLORER, a one-meter-long, and a conventional 24-cm-long scanner. Quantification and lesion contrast were minimally affected in both long axial field-of-view scanners and in a whole-body 20-min scan, the mean bias in all analyzed organs of interest were within a ±10% range compared to ground-truth activity maps. Quantification was affected in certain organs, when scan duration was reduced to 5 min or a reduced acceptance angle of 17° was used. Analysis of the Compton scattered events suggests that implementing a scatter correction method for the transmission data will be required, and increasing the energy threshold from 250 keV to 290 keV can reduce the computational costs and data rates, with negligible effects on PET quantification. Finally, the current results can serve as groundwork for transferring lutetium-based attenuation correction into research and clinical practice.

Comparison of Image Quality According to Phantom Fluid Material in MR-based Attenuation Correction PET Imaging in PET/MR

Integrated positron emission tomography (PET)/magnetic resonance (MR) imaging is gradually being used to improve the rate of cancer lesion detection in the medical field. To enhance the quality of PET/MR images, attenuation correction (AC) techniques are used by applying MR pulse sequences of the controlled aliasing in parallel imaging results in higher acceleration (CAIPI; MR ACSUBDixon-Caipi/SUB) and the generation autocalibrating partially parallel acquisition (GRAPPA; MR ACSUBDixon-Grappa/SUB), based on the T1-weighted two-point Dixon pulse sequence. In addition, quality control using a Jaszczak phantom filled with water and radioisotopes is frequently performed when scanning the patient. When acquiring MR-based AC PET images in the phantom study, artifacts are caused by high permittivity in water, and there is a limitation in the acquisition of uniform image quality. Therefore, the purpose of this study was to compare the image quality using phantom fluids with lower permittivity than water (sodium chloride (NaCl) NaCl+nickel sulfate (NiSO₄)) according to MR ACSUBDixon-Caipi/SUB and MR ACSUBDixon-Grappa/SUB pulse sequences using various quantitative analysis parameters: percent of non-uniformity (PNU), percent contrast recovery (PCR), signal to noise ratio (SNR), and coefficient of variation (COV). The results indicated that the image quality with NaCl+NiSO₄ fluid based on the results was 1.2-, 1.6-, 1.4-, and 1.1 times superior to that of NaCl fluid, respectively. In conclusion, NaCl+NiSO₄ fluid is suitable as a phantom fluid material in PET/MR images.

Evaluation of attenuation correction in PET/MRI with synthetic lesion insertion.

Purpose: One major challenge facing simultaneous positron emission tomography (PET)/ magnetic resonance imaging (MRI) is PET attenuation correction (AC) measurement and evaluation of its accuracy. There is a crucial need for the evaluation of current and emergent PET AC methodologies in terms of absolute quantitative accuracy in the reconstructed PET images. Approach: To address this need, we developed and evaluated a lesion insertion tool for PET/MRI that will facilitate this evaluation process. This tool was developed for the Biograph mMR and evaluated using phantom and patient data. Contrast recovery coefficients (CRC) from the NEMA IEC phantom of synthesized lesions were compared to measurements. In addition, SUV biases of lesions inserted in human brain and pelvis images were assessed from PET images reconstructed with MRI-based AC (MRAC) and CT-based AC (CTAC). Results: For cross-comparison PET/MRI scanners AC evaluation, we demonstrated that the developed lesion insertion tool can be harmonized with the GE-SIGNA lesion insertion tool. About CRC curves difference between simulation and measurement was achieved. An average of 1.6% between harmonized simulated CRC curves obtained with mMR and SIGNA lesion insertion tools was achieved. A range of to 12% MRAC to CTAC SUV bias was respectively achieved in the vicinity and inside bone tissues in patient images in two anatomical regions, the brain, and pelvis. Conclusions: A lesion insertion tool was developed for the Biograph mMR PET/MRI scanner and harmonized with the SIGNA PET/MRI lesion insertion tool. These tools will allow for an accurate evaluation of different PET/MRI AC approaches and permit exploration of subtle attenuation correction differences across systems.

Accurate Transmission-Less Attenuation Correction Method for Amyloid-β Brain PET Using Deep Neural Network

The lack of physically measured attenuation maps (μ-maps) for attenuation and scatter correction is an important technical challenge in brain-dedicated stand-alone positron emission tomography (PET) scanners. The accuracy of the calculated attenuation correction is limited by the nonuniformity of tissue composition due to pathologic conditions and the complex structure of facial bones. The aim of this study is to develop an accurate transmission-less attenuation correction method for amyloid-β (Aβ) brain PET studies. We investigated the validity of a deep convolutional neural network trained to produce a CT-derived μ-map (μ-CT) from simultaneously reconstructed activity and attenuation maps using the MLAA (maximum likelihood reconstruction of activity and attenuation) algorithm for Aβ brain PET. The performance of three different structures of U-net models (2D, 2.5D, and 3D) were compared. The U-net models generated less noisy and more uniform μ-maps than MLAA μ-maps. Among the three different U-net models, the patch-based 3D U-net model reduced noise and cross-talk artifacts more effectively. The Dice similarity coefficients between the μ-map generated using 3D U-net and μ-CT in bone and air segments were 0.83 and 0.67. All three U-net models showed better voxel-wise correlation of the μ-maps compared to MLAA. The patch-based 3D U-net model was the best. While the uptake value of MLAA yielded a high percentage error of 20% or more, the uptake value of 3D U-nets yielded the lowest percentage error within 5%. The proposed deep learning approach that requires no transmission data, anatomic image, or atlas/template for PET attenuation correction remarkably enhanced the quantitative accuracy of the simultaneously estimated MLAA μ-maps from Aβ brain PET.

Synthesizing PET/MR (T1-weighted) images from non-attenuation-corrected PET images

Positron emission tomography (PET) imaging can be used for early detection, diagnosis and postoperative patient monitoring of many diseases. Traditional PET imaging requires not only additional computed tomography (CT) imaging or magnetic resonance imaging (MR) to provide anatomical information but also attenuation correction (AC) map calculation based on CT images or MR images for accurate quantitative estimation. During a patient’s treatment, PET/CT or PET/MR scans are inevitably repeated many times, leading to additional doses of ionizing radiation (CT scans) and additional economic and time costs (MR scans). To reduce adverse effects while obtaining high-quality PET/MR images in the course of a patient’s treatment, especially in the stage of evaluating the effect of postoperative treatment, in this work, we propose a new method based on deep learning, which can directly obtain synthetic attenuation-corrected PET (sAC PET) and synthetic T1-weighted MR (sMR) images based only on non-attenuation-corrected PET (NAC PET) images. Our model, based on the Wasserstein generative adversarial network, first removes noise and artifacts from the NAC PET images to generate sAC PET images and then generates sMR images from the obtained sAC PET images. To evaluate the performance of this generative model, we evaluated it on paired PET/MR images from a total of eighty clinical patients. Based on qualitative and quantitative analysis, the generated sAC PET and sMR images showed a high degree of similarity to the real AC PET and real MR images. These results indicated that our proposed method can reduce the frequency of additional anatomical imaging scans during PET imaging and has great potential in improving doctors’ clinical diagnosis efficiency, saving patients’ economic expenditure and reducing the radiation risk brought by CT scanning.

Toward PET/MRI as one-stop shop for radiotherapy planning in cervical cancer patients

Background Radiotherapy (RT) planning for cervical cancer patients entails the acquisition of both Computed Tomography (CT) and Magnetic Resonance Imaging (MRI). Further, molecular imaging by Positron Emission Tomography (PET) could contribute to target volume delineation as well as treatment response monitoring. The objective of this study was to investigate the feasibility of a PET/MRI-only RT planning workflow of patients with cervical cancer. This includes attenuation correction (AC) of MRI hardware and dedicated positioning equipment as well as evaluating MRI-derived synthetic CT (sCT) of the pelvic region for positioning verification and dose calculation to enable a PET/MRI-only setup. Material and methods 16 patients underwent PET/MRI using a dedicated RT setup after the routine CT (or PET/CT), including eight pilot patients and eight cervical cancer patients who were subsequently referred for RT. Data from 18 patients with gynecological cancer were added for training a deep convolutional neural network to generate sCT from Dixon MRI. The mean absolute difference between the dose distributions calculated on sCT and a reference CT was measured in the RT target volume and organs at risk. PET AC by sCT and a reference CT were compared in the tumor volume. Results All patients completed the examination. sCT was inferred for each patient in less than 5 s. The dosimetric analysis of the sCT-based dose planning showed a mean absolute error (MAE) of 0.17 ± 0.12 Gy inside the planning target volumes (PTV). PET images reconstructed with sCT and CT had no significant difference in quantification for all patients. Conclusions These results suggest that multiparametric PET/MRI can be successfully integrated as a one-stop-shop in the RT workflow of patients with cervical cancer.

Deep learning-based attenuation correction for brain PET with various radiotracers.

Attenuation correction (AC) is crucial for ensuring the quantitative accuracy of positron emission tomography (PET) imaging. However, obtaining accurate μ-maps from brain-dedicated PET scanners without AC acquisition mechanism is challenging. Therefore, to overcome these problems, we developed a deep learning-based PET AC (deep AC) framework to synthesize transmission computed tomography (TCT) images from non-AC (NAC) PET images using a convolutional neural network (CNN) with a huge dataset of various radiotracers for brain PET imaging. The proposed framework is comprised of three steps: (1) NAC PET image generation, (2) synthetic TCT generation using CNN, and (3) PET image reconstruction. We trained the CNN by combining the mixed image dataset of six radiotracers to avoid overfitting, including [18F]FDG, [18F]BCPP-EF, [11C]Racropride, [11C]PIB, [11C]DPA-713, and [11C]PBB3. We used 1261 brain NAC PET and TCT images (1091 for training and 70 for testing). We did not include [11C]Methionine subjects in the training dataset, but included them in the testing dataset. The image quality of the synthetic TCT images obtained using the CNN trained on the mixed dataset of six radiotracers was superior to those obtained using the CNN trained on the split dataset generated from each radiotracer. In the [18F]FDG study, the mean relative PET biases of the emission-segmented AC (ESAC) and deep AC were 8.46 ± 5.24 and - 5.69 ± 4.97, respectively. The deep AC PET and TCT AC PET images exhibited excellent correlation for all seven radiotracers (R2 = 0.912-0.982). These results indicate that our proposed deep AC framework can be leveraged to provide quantitatively superior PET images when using the CNN trained on the mixed dataset of PET tracers than when using the CNN trained on the split dataset which means specific for each tracer.

A deep learning-based approach for direct PET attenuation correction using Wasserstein generative adversarial network

Positron emission tomography (PET) in some clinical assistant diagnose demands attenuation correction (AC) and scatter correction (SC) to obtain high-quality imaging, leading to gaining more precise metabolic information in tissue or organs of patient. However, there still are some inevitable issues, such as imperceptible mismatching precision between PET and CT imaging, or plenty of ionizing radiation dose exposure in many after-treatment inspections. To cope with the abovementioned issues, we introduced a deep learning-based technique to achieve a direct attenuation correction for PET imaging in this article. Moreover, wasserstein generative adversarial networks and hybrid loss, including adversarial loss, L2 loss and gradient difference loss, were utilized to enforce the deep network model to synthesize PET images with much richer detail information. A comprehensive research was designed and carried out on a total of forty-five sets of PET images of lymphoma patients for the model training stage and test stage. Final performances analysis was totally based on our experimental outcomes, which demonstrated that the proposed algorithm has definitely improved the quality of PET imaging according to qualitative and quantitative study.