The rising energy prices and the costs of CO2 emissions into the atmosphere are forcing the construction industry to search for ways to reduce cement consumption in concrete technology by optimizing concrete mixtures and making greater use of chemical admixtures. The scientific problem lies in understanding how polymers modified with silica-derived secondary materials, such as those obtained from fly ash (e.g., synthetic zeolites, mesoporous silica), interact with the concrete matrix and influence their durability and strength. The present study investigated the effect of a polymeric admixture based on polycarboxylic ether (PCE) modified with silica-derived secondary materials obtained from fly ash (synthetic zeolites, mesoporous silica) on the physical and mechanical properties of concrete. The study considered the effect of the modified polymer admixture dosed in 3 different amounts (0.4%, 0.8% and 1.2%) by weight of cement on the fresh properties of the concrete mixture, i.e. consistency and air content. The research scope also included determining the physico-mechanical properties of the concretes and investigating the effect of the modified admixture on the frost durability of the cement composite. In order to study the modification of the concrete microstructure, XRD phase analysis and air pore structure analysis by MIP were carried out. The study showed an increase in compressive strength after 28 days of curing in concretes containing the modified polymer of about 8-12% compared to the reference concrete. In addition, it was observed that strength increased with increasing admixture dosage. The resulting pore structure, contributed to improving the frost resistance of the concretes by reducing compressive strength loss from about 14% in reference concretes to about 2-9% in concretes with the modified polymer after 150 cycles of alternating freeze-thaw. At the same time, it was observed that the use of the modified polymer resulted in an increase in weight absorption from 2% do 4.5%, a more than twofold increase in depth of penetration of water under pressure and a more than 70% increased total porosity. In conclusion, the polymer-modified MCM-41 can positively affect the mechanical and durability properties of concrete, but it causes a change in the pore structure, which could have a negative effect on water absorption and total porosity.