Wall Polymers Research Articles

The role of arabinokinase in arabinose toxicity in plants.

Plant cell wall polymers are synthesized by glycosyltransferases using nucleotide sugars as substrates. Most UDP-sugars are synthesized from UDP-glucose via de novo pathways but salvage pathways work in parallel to recycle sugars, which have been released during cell wall polymer and glycoprotein turnover. Here we report on the cloning and biochemical analysis of two arabinokinases in Arabidopsis. Arabinokinase is a 100 kDa protein located in the cytosol with a putative N-terminal glycosyltransferase domain and a C-terminal sugar-1-kinase domain. This unique structure is highly conserved in the plant kingdom. Arabinokinase has a high affinity for l-arabinose, which is the only sugar substrate of this GHMP (galactose; homoserine; mevalonate; phosphomevalonate) kinase. Plants that were knocked-out for arabinokinase and the previously described ara1-1 mutant were characterized. The ARA1-1 mutant form of the enzyme carries a point mutation in an α-helix. The mutation is close to the substrate binding site and changes the Km value for arabinose from 80μm in the wild type to 17000μm in ARA1-1. The previous arabinose toxicity explanation is challenged by knockout plants in arabinokinase that accumulate higher levels of arabinose but do not show signs of arabinose toxicity. Analysis of marker genes from sugar signalling pathways (SnRK1 and Tor) suggest that ara1-1 misinterprets its carbon energy status. Although glucose is present in ara1-1 similar to wild type levels, it constitutively changes gene expression as typically found in wild type plants only under starvation conditions. Furthermore, ara1-1 shows increased expression of marker genes for programmed cell death as found in other lesion mimic mutants.

The effects of sous-vide cooking parameters on texture and cell wall modifications in two apple cultivars: A response surface methodology approach.

This work aimed at evaluating the effects of sous-vide cooking parameters, such as time and temperature and their interactions, on textural attributes of 'Mondial Gala' and 'Granny Smith' apple cultivars. For this, different response surface methodology-based models were developed. This methodology proved a suitable means for the assessment of changes in textural parameters and cell wall modifications during the processing of apples. 'Mondial Gala' fruit displayed better aptitude for the preservation of textural properties after high-temperature processing conditions and were therefore apparently more suited to sous-vide cooking than 'Granny Smith' apples. Pectin methylesterase activity levels in 'Mondial Gala' apples were enhanced at mild temperatures and pectins in this cultivar displayed a lower degree of methylation. Therefore, the establishment of calcium-mediated linkages between cell wall polymers might have been favoured in 'Mondial Gala' apples, thus reinforcing tissues and improving the preservation of textural attributes, in comparison to 'Granny Smith' samples.

Structure and dynamics of the multi-domain resuscitation promoting factor RpfB from Mycobacterium tuberculosis

RpfB is multidomain protein that is crucial for Mycobacterium tuberculosis resuscitation from dormancy. This protein cleaves cell wall peptidoglycan, an essential bacterial cell wall polymer formed by glycan chains of β-(1-4)-linked-N-acetylglucosamine (GlcNAc) and N-acetylmuramic acid (MurNAc) cross-linked by short peptide stems. RpfB is structurally complex being composed of five distinct domains, namely a catalytic, a G5 and three DUF348 domains. Here, we have undertaken a combined experimental and computation structural investigations on the entire protein to gain insights into its structure–function relationships. CD spectroscopy and light scattering experiments have provided insights into the protein fold stability and into its oligomeric state. Using the available structure information, we modeled the entire protein structure, which includes the two DUF348 domains whose structure is experimentally unknown, and we analyzed the dynamic behavior of RpfB using molecular dynamics simulations. Present results highlight an intricate mutual influence of the dynamics of the different protein domains. These data provide interesting clues on the functional role of non-catalytic domains of RpfB and on the mechanism of peptidoglycan degradation necessary to resuscitation of M. tuberculosis.

Eucalyptus Cell Wall Architecture: Clues for Lignocellulosic Biomass Deconstruction

The architecture, composition, and chemical properties of wood cell walls have a direct influence on the process that occurs prior to fermentation in second-generation biofuel production. The understanding of the construction patterns of cell wall types is the key to the new era of second-generation biofuels. Eucalyptus species are great candidates for this purpose since these species are among the fastest growing hardwood trees in the world and they have been improved for biomass production. We applied the glycome profiling and other combined techniques to study xylem cell walls of three economically important species (Eucalyptus globulus, Eucalyptus grandis, and Eucalyptus urophylla). Glycome profiling analyses revealed that species differ in the same key aspects of cell wall polymer linkages, with E. globulus and E. urophylla presenting contrasting phenotypes, and E. grandis with intermediate characteristics. E. urophylla is known for high recalcitrance, that is probably determined by the strong associations between lignin and cell wall polymers, and also lignin content. On the other hand, E. globulus cell wall polymers are loosely linked, so its cell wall can be easily deconstructed. We have shown in this work that the composition of cell walls differs in quantity and quality among the Eucalyptus species and such variations in composition influence the process of lignocellulosic feedstock assessment. However, the greatest influence relies on the amount and type of associations between cell wall polymers. A high yield of cellulose, from any biomass source, directly depends on the cell wall architecture.

Enzyme-Less Growth in Chara and Terrestrial Plants.

Enzyme-less chemistry appears to control the growth rate of the green alga Chara corallina. The chemistry occurs in the wall where a calcium pectate cycle determines both the rate of wall enlargement and the rate of pectate deposition into the wall. The process is the first to indicate that a wall polymer can control how a plant cell enlarges after exocytosis releases the polymer to the wall. This raises the question of whether other species use a similar mechanism. Chara is one of the closest relatives of the progenitors of terrestrial plants and during the course of evolution, new wall features evolved while pectate remained one of the most conserved components. In addition, charophytes contain auxin which affects Chara in ways resembling its action in terrestrial plants. Therefore, this review considers whether more recently acquired wall features require different mechanisms to explain cell expansion.

Characteristics of the Clostridium difficile cell envelope and its importance in therapeutics

Summary Clostridium difficile infection (CDI) is a challenging threat to human health. Infections occur after disruption of the normal microbiota, most commonly through the use of antibiotics. Current treatment for CDI largely relies on the broad‐spectrum antibiotics vancomycin and metronidazole that further disrupt the microbiota resulting in frequent recurrence, highlighting the need for C. difficile‐specific antimicrobials. The cell surface of C. difficile represents a promising target for the development of new drugs. C. difficile possesses a highly deacetylated peptidoglycan cell wall containing unique secondary cell wall polymers. Bound to the cell wall is an essential S‐layer, formed of SlpA and decorated with an additional 28 related proteins. In addition to the S‐layer, many other cell surface proteins have been identified, including several with roles in host colonization. This review aims to summarize our current understanding of these different C. difficile cell surface components and their viability as therapeutic targets.

Combustion behavior of Scots pine (Pinus sylvestris L.) sapwood treated with a dispersion of aluminum oxychloride-modified silica

Abstract Treatment of wood with aqueous dispersions of silica that have been modified with aluminum oxychloride (AlOCl) can impart wood water repellence and increased resistance to fungal decay. This study is a comparative survey on the effects of treatment with modified and non-modified silica dispersions in terms of the combustion behavior of the Scots pine (Pinus sylvestris L.) to evaluate the fire risk of this wood utilized as a construction material. The thermogravimetric results showed that treatments with the silica dispersions did not change the pyrolysis temperature of wood polymers, i.e. there was no synergetic interaction between silica and cell wall polymers during pyrolysis. Cone calorimetry (CONE) indicated that the silica-treated wood required longer time for ignition than the untreated control, but wood chars were similar. Treatments with both silica dispersions led to considerable reduction in the heat release (HR) and smoke production, but the cationically modified silica was more efficient than the unmodified silica. These findings were interpreted that incorporation of modified silica did not substantially influence the pyrolysis of cell wall polymers because they have not penetrated the cell wall; they have rather reduced the fire risk via forming a barrier against oxygen access and a thermal protection shield.

Transgenic Plant-Produced Hydrolytic Enzymes and the Potential of Insect Gut-Derived Hydrolases for Biofuels.

Various perennial C4 grass species have tremendous potential for use as lignocellulosic biofuel feedstocks. Currently available grasses require costly pre-treatment and exogenous hydrolytic enzyme application to break down complex cell wall polymers into sugars that can then be fermented into ethanol. It has long been hypothesized that engineered feedstock production of cell wall degrading (CWD) enzymes would be an efficient production platform for of exogenous hydrolytic enzymes. Most research has focused on plant overexpression of CWD enzyme-coding genes from free-living bacteria and fungi that naturally break down plant cell walls. Recently, it has been found that insect digestive tracts harbor novel sources of lignocellulolytic biocatalysts that might be exploited for biofuel production. These CWD enzyme genes can be located in the insect genomes or in symbiotic microbes. When CWD genes are transformed into plants, negative pleiotropic effects are possible such as unintended cell wall digestion. The use of codon optimization along with organelle and tissue specific targeting improves CWD enzyme yields. The literature teaches several important lessons on strategic deployment of CWD genes in transgenic plants, which is the focus of this review.

Integrating cell biology, image analysis, and computational mechanical modeling to analyze the contributions of cellulose and xyloglucan to stomatal function

ABSTRACTCell walls are likely to be essential determinants of the amazing strength and flexibility of the guard cells that surround each stomatal pore in plants, but surprisingly little is known about cell wall composition, organization, and dynamics in guard cells. Recent analyses of cell wall organization and stomatal function in the guard cells of Arabidopsis thaliana mutants with defects in cellulose and xyloglucan have allowed for the development of new hypotheses about the relative contributions of these components to guard cell function. Advanced image analysis methods can allow for the automated detection of key structures, such as microtubules (MTs) and Cellulose Synthesis Complexes (CSCs), in guard cells, to help determine their contributions to stomatal function. A major challenge in the mechanical modeling of dynamic biological structures, such as guard cell walls, is to connect nanoscale features (e.g., wall polymers and their molecular interactions) with cell-scale mechanics; this challenge can be addressed by applying multiscale computational modeling that spans multiple spatial scales and physical attributes for cell walls.

Mechanically Activated Enzymatic Hydrolysis of Yeast Biomass

Experimental studies were focused on the processes that occur during mechanoenzymatic hydrolysis of cell wall polymers of yeast Saccharomyces cerevisiae. Particular attention was paid to the reactivities of polymers involved in the supramolecular structures of the cell walls, as well as to the technology scaling-up using pilot and industrial facilities. The Russian commercially available enzymatic agent CelloLux 2000 (from Sibbiofarm LLC, Berdsk) was used for the studies. It was shown that mechanical treatment of the yeast biomass allows the supramolecular structure of cell wall polymers to be changed and their reactivity to enzymatic hydrolysis to be improved. The yields of mannanoligosaccharide (1,1 %) and mannanoproteins (2,7 %) to the alkali extract were determined. A phenomenological model based on autolocalized process mechanism was suggested for the mechanically activated enzymatic hydrolysis. Pilot and industrial facilities of Sibbiofarm LLC was used for the technology scaling-up and for preparation of the new mannanoligosaccharide product for animal industry. A pilot batch of the product was tested, its efficiency in fighting salmonellosis and gaining in weight of animals demonstrated.

Identification of a Lipoteichoic Acid Glycosyltransferase Enzyme Reveals that GW-Domain-Containing Proteins Can Be Retained in the Cell Wall of Listeria monocytogenes in the Absence of Lipoteichoic Acid or Its Modifications.

ABSTRACTListeria monocytogenes is a foodborne Gram-positive bacterial pathogen, and many of its virulence factors are either secreted proteins or proteins covalently or noncovalently attached to the cell wall. Previous work has indicated that noncovalently attached proteins with GW (glycine-tryptophan) domains are retained in the cell wall by binding to the cell wall polymer lipoteichoic acid (LTA). LTA is a glycerol phosphate polymer, which is modified in L. monocytogenes with galactose and d-alanine residues. We identified Lmo0933 as the cytoplasmic glycosyltransferase required for the LTA glycosylation process and renamed the protein GtlA, for glycosyltransferase LTA A. Using L. monocytogenes mutants lacking galactose or d-alanine modifications or the complete LTA polymer, we show that GW domain proteins are retained within the cell wall, indicating that other cell wall polymers are involved in the retention of GW domain proteins. Further experiments revealed peptidoglycan as the binding receptor as a purified GW domain fusion protein can bind to L. monocytogenes cells lacking wall teichoic acid (WTA) as well as purified peptidoglycan derived from a wild-type or WTA-negative strain. With this, we not only identify the first enzyme involved in the LTA glycosylation process, but we also provide new insight into the binding mechanism of noncovalently attached cell wall proteins. IMPORTANCE Over the past 20 years, a large number of bacterial genome sequences have become available. Computational approaches are used for the genome annotation and identification of genes and encoded proteins. However, the function of many proteins is still unknown and often cannot be predicted bioinformatically. Here, we show that the previously uncharacterized Listeria monocytogenes gene lmo0933 likely codes for a glycosyltransferase required for the decoration of the cell wall polymer lipoteichoic acid (LTA) with galactose residues. Using L. monocytogenes mutants lacking LTA modifications or the complete polymer, we show that specific cell wall proteins, often associated with virulence, are retained within the cell wall, indicating that additional cell wall polymers are involved in their retention.

Role of bifunctional ammonia-lyase in grass cell wall biosynthesis.

L-Phenylalanine ammonia-lyase (PAL) is the first enzyme in the biosynthesis of phenylpropanoid-derived plant compounds such as flavonoids, coumarins and the cell wall polymer lignin. The cell walls of grasses possess higher proportions of syringyl (S)-rich lignins and high levels of esterified coumaric acid compared with those of dicotyledonous plants, and PAL from grasses can also possess tyrosine ammonia-lyase (TAL) activity, the reason for which has remained unclear. Using phylogenetic, transcriptomic and in vitro biochemical analyses, we identified a single homotetrameric bifunctional ammonia-lyase (PTAL) among eight BdPAL enzymes in the model grass species Brachypodium distachyon. (13)C isotope labelling experiments along with BdPTAL1-downregulation in transgenic plants showed that the TAL activity of BdPTAL1 can provide nearly half of the total lignin deposited in Brachypodium, with a preference for S-lignin and wall-bound coumarate biosynthesis, indicating that PTAL function is linked to the characteristic features of grass cell walls. Furthermore, isotope dilution experiments suggest that the pathways to lignin from L-phenylalanine and L-tyrosine are distinct beyond the formation of 4-coumarate, supporting the organization of lignin synthesis enzymes in one or more metabolons.

Characterizing phenol–formaldehyde adhesive cure chemistry within the wood cell wall

Adhesive bonding of wood using phenol–formaldehyde remains the industrial standard in wood product bond durability. Not only does this adhesive infiltrate the cell wall, it also is believed to form primary bonds with wood cell wall polymers, particularly guaiacyl lignin. However, the mechanism by which phenol–formaldehyde adhesive integrally interacts and bonds to lignin within the cell wall remains unclear. We used recently developed solubilization methodologies in conjunction with two-dimensional 1H–13C solution-state NMR spectroscopy of ball-milled pine earlywood and latewood bonded assemblies to characterize the chemical modification of wood cell wall polymers after phenol–formaldehyde curing at various cooking times. The results showed that the highly alkaline resin at 140°C decreased the frequency of the principal arylglycerol-β-aryl ether interunit linkage by eighty percent in earlywood and by twenty percent in latewood. The presence of newly formed diarylmethanes between guaiacyl lignin units and phenolic methylols was confirmed via NMR spectra of the aliphatic methylene and aromatic regions. The phenol–formaldehyde cure chemistry showed that o–p methylene bridges dominated in both earlywood and latewood cell walls, but the propensity of p–p substitution is higher in the latewood cell wall. Our results provide evidence for a simultaneous wood polymer degradation and guaiacyl unit C5 bond formation that occurs during phenol–formaldehyde curing. This competition may be necessary for developing good bond durability between the adhesive and wood.

Ant mediated redistribution of a xyloglucanase enzyme in fungus gardens of Acromyrmex echinatior.

BackgroundXyloglucan is an important component in plant cell walls that herbivores cannot digest without microbial symbionts. Leaf-cutting ants are major insect herbivores in the Neo-Tropics that rely on fungus-garden enzymes for degrading plant cell walls. However, many of these ants discard much of their harvested plant material after partial degradation, which has led to the hypothesis that the fungal symbionts are primarily producing cell wall degrading enzymes to gain access to intracellular nutrients rather than for obtaining sugars from recalcitrant cell wall polymers, such as (hemi-)cellulose.ResultsThe fungal symbiont provides a single xyloglucanase (Xeg1) to its ant farmers by upregulating the expression of this protein in the inflated hyphal tips (gongylidia) that the ants ingest. Similar to other enzymes ingested this way, also Xeg1 is not digested but vectored to the fresh leaf-fragment pulp at the top of fungus gardens via ant fecal fluid. Xeg1 is 4-5 times more active in fecal fluid when ants ingest their normal fungal food, compared to a sucrose control diet, as expected when they cannot produce Xeg1 themselves. We confirm substrate specificity of fungal Xeg1 towards xyloglucan by heterologous expression in yeast and show that xyloglucanase activity is higher in the oldest, bottom layers of fungus gardens and in discarded debris material than in the upper and middle layers of fungus gardens.ConclusionOur results are consistent with Xeg1 playing a role in the initial breakdown of plant cell wall hemicellulose to provide sugars for aggressive hyphal growth before intracellular proteins become available. Xeg1 does not play a major decomposition role in the middle layer of fungus gardens where it is produced by the gongylidia. Overall high xyloglucanase activity in old mycelium that is (about to be) discarded is striking and quite possibly serves defensive purposes by precluding that competing microorganisms can grow. Our results support the hypothesis that the ant-fungus symbiosis prioritizes access to the protein-rich contents of live plant cells and that carbohydrates are not a limiting resource.Electronic supplementary materialThe online version of this article (doi:10.1186/s12866-016-0697-4) contains supplementary material, which is available to authorized users.

Effect of Commercial Enzymes on Berry Cell Wall Deconstruction in the Context of Intravineyard Ripeness Variation under Winemaking Conditions.

Significant intravineyard variation in grape berry ripening occurs within vines and between vines. However, no cell wall data are available on such variation. Here we used a checkerboard panel design to investigate ripening variation in pooled grape bunches for enzyme-assisted winemaking. The vineyard was dissected into defined panels, which were selected for winemaking with or without enzyme addition. Cell wall material was prepared and subjected to high-throughput profiling combined with multivariate data analysis. The study showed that significant ripening-related variation was present at the berry cell wall polymer level and occurred within the experimental vineyard block. Furthemore, all enzyme treatments reduced cell wall variation via depectination. Interestingly, cell wall esterification levels were unaffected by enzyme treatments. This study provides clear evidence that enzymes can positively influence the consistency of winemaking and provides a foundation for further research into the relationship between grape berry cell wall architecture and enzyme formulations.

9-1:Distinguished Paper: A Foldable Ultra-Thin LCD Using A Coat-Debond Polyimide Substrate and Polymer Walls

We have developed foldable ultra-thin LCD using colorless polyimide substrates with low birefringence by the coat-debond fabrication method. We clarified that the polymer walls structure is important to stabilize a cell thickness in a curved state and successfully achieved thin foldable LC device with small curvature radius less than 3mm.

Skin penetration and dermal tolerability of acrylic nanocapsules: Influence of the surface charge and a chitosan gel used as vehicle

For an improved understanding of the relevant particle features for cutaneous use, we studied the effect of the surface charge of acrylic nanocapsules (around 150nm) and the effect of a chitosan gel vehicle on the particle penetration into normal and stripped human skin ex vivo as well as local tolerability (cytotoxicity and irritancy). Rhodamin-tagged nanocapsules penetrated and remained in the stratum corneum. Penetration of cationic nanocapsules exceeded the penetration of anionic nanocapsules. When applied on stripped skin, however, the fluorescence was also recorded in the viable epidermis and dermis. Cationic surface charge and embedding the particles into chitosan gel favored access to deeper skin. Keratinocytes took up the nanocapsules rapidly. Cytotoxicity (viability<80%), following exposure for ≥24h, appears to be due to the surfactant polysorbate 80, used for nanocapsuleś stabilization. Uptake by fibroblasts was low and no cytotoxicity was observed. No irritant reactions were detected in the HET-CAM test. In conclusion, the surface charge and chitosan vehicle, as well as the skin barrier integrity, influence the skin penetration of acrylic nanocapsules. Particle localization in the intact stratum corneum of normal skin and good tolerability make the nanocapsules candidates for topical use on the skin, provided that the polymer wall allows the release of the active encapsulated substance.

Pectins, Hemicelluloses and Celluloses Show Specific Dynamics in the Internal and External Surfaces of Grape Berry Skin During Ripening.

Grapevine berry skin is a complex structure that contributes to the final size and shape of the fruit and affects its quality traits. The organization of cell wall polysaccharides in situ and their modification during ripening are largely uncharacterized. The polymer structure of Corvina berry skin, its evolution during ripening and related modifying genes were determined by combing mid-infrared micro-spectroscopy and multivariate statistical analysis with transcript profiling and immunohistochemistry. Spectra were acquired in situ using a surface-sensitive technique on internal and external sides of the skin without previous sample pre-treatment, allowing comparison of the related cell wall polymer dynamics. The external surface featured cuticle-related bands; the internal surface showed more adsorbed water. Application of surface-specific normalization revealed the major molecular changes related to hemicelluloses and pectins in the internal surface and to cellulose and pectins in the external surface and that they occur between mid-ripening and full ripening in both sides of the skin. Transcript profiling of cell wall-modifying genes indicated a general suppression of cell wall metabolism during ripening. Genes related to pectin metabolism-a β-galactosidase, a pectin(methyl)esterase and a pectate lyase-and a xyloglucan endotransglucosylase/hydrolase, involved in hemicellulose modification, showed enhanced expression. In agreement with Fourier transform infrared spectroscopy, patterns due to pectin methyl esterification provided new insights into the relationship between pectin modifications and the associated transcript profile during skin ripening. This study proposes an original description of polymer dynamics in grape berries during ripening, highlighting differences between the internal and external sides of the skin.

Influence of process conditions on hygroscopicity and mechanical properties of European beech thermally modified in a high-pressure reactor system

AbstractEuropean beech (Fagus sylvaticaL.) was thermally modified in a closed reactor system under various process conditions. Sorption cycles, dynamic vapor sorption (DVS) measurements, and a three-point bending test were performed on thermally modified wood (TMW) to assess hygroscopicity and mechanical properties. As a function of mass loss (ML), the initial equilibrium moisture content (EMC) measured at 20°C/65% relative humidity (RH) directly after the process was strongly influenced by the RH during the process. This effect is explained by realignments of amorphous polymers in the cell wall ultra-structure in the course of thermal modification (TM). However, the EMC of TMW gradually increased after sorption cycles consisting of conditioning over liquid water and water-soaking. This increase was most distinct for TMW modified at low RH, which is an indication for reversible ultra-structural realignments. Results of the bending test suggest that structural realignments also hindered the plastic flow of amorphous cell wall polymers, thereby reducing inelastic toughness and inelastic deflection, while other bending properties were solely affected by ML alone. Process conditions in a closed reactor systems have a profound impact on resulting wood properties, and thus, the partial reversibility of these property changes need to be considered during the application.

Turnover of Bacterial Cell Wall by SltB3, a Multidomain Lytic Transglycosylase of Pseudomonas aeruginosa.

A family of 11 lytic transglycosylases in Pseudomonas aeruginosa, an opportunistic human pathogen, turn over the polymeric bacterial cell wall in the course of its recycling, repair, and maturation. The functions of these enzymes are not fully understood. We disclose herein that SltB3 of P. aeruginosa is an exolytic lytic transglycosylase. We characterize its reaction and its products by the use of peptidoglycan-based molecules. The enzyme recognizes a minimum of four sugars in its substrate but can process a substrate comprised of a peptidoglycan of 20 sugars. The ultimate product of the reaction is N-acetylglucosamine-1,6-anhydro-N-acetylmuramic acid. The X-ray structure of this enzyme is reported for the first time. The enzyme is comprised of four domains, arranged within an annular conformation. The polymeric linear peptidoglycan substrate threads through the opening of the annulus, as it experiences turnover.