Resistant Plant Cultivars Research Articles

Tsw-resistant Pepper Cultivars Offer Limited Protection Against Resistance-breaking Isolates of Tomato Spotted Wilt Virus

Pepper (Capsicum annuum L.) is an important vegetable crop in the US. Thrips-transmitted tomato spotted wilt virus (TSWV), a causal agent of tomato spotted wilt (TSW) disease cause severe yield losses across the globe. TSWV management is centered around planting resistant pepper cultivars containing a single dominant gene Tsw. However, due to a long-term overreliance on Tsw-resistant cultivars, resistance-breaking (RB) strains of TSWV disrupting Tsw resistance have been reported globally. To comprehensively understand the extent of protection offered by Tsw resistant pepper cultivars against RB isolates, we studied the TSW incidence, severity, and TSWV accumulation in resistant and susceptible pepper cultivars through multi-year field trials (2021-2023) in Bushland, TX. For the 2022 and 2023 growing seasons, the presence of RB isolates in field-infected plants was confirmed using controlled mechanical inoculation experiments. During all three seasons, resistant cultivars (2021: 6.77%, 2022: 17.33%, and 2023: 11.29%) had significantly lower TSW incidence, compared with the susceptible cultivars (2021: 23.85, 2022: 25.03, and 2023: 20.63%). Furthermore, susceptible cultivars accumulated significantly higher amounts of TSWV than resistant cultivars. Also, the median severity of TSW symptoms in resistant cultivars was always lower than in susceptible cultivars. Results from this study show that TSWV-resistant pepper cultivars are still the best option against TSWV RB-isolates under field conditions. However, they fail to offer a complete protection against these isolates. The long-term success of single gene-mediated resistance warrants better harmonization of resistant cultivars with diverse sources of resistance and with existing IPM strategies proven effective against TSWV and thrips.

Triticum monococcum subsp. monococcum and aegilopoides: new sources of resistance to the dipteran pest, Hessian fly (Diptera: Cecidomyiidae).

The Hessian fly, Mayetiola destructor (Say) belonging to the order Diptera (family: Cecidomyiidae), is a destructive pest of host wheat (Triticum aestivum L.) causing significant economic losses. Although planting resistant wheat cultivars harboring an effective Hessian fly resistance gene (H) is the most economical and environmentally friendly pest management strategy, it imposes selection pressure on the insect populations and can lead to the evolution of Hessian fly virulence. This results in the eventual failure of the deployed H gene. New sources and novel types of resistance are urgently needed to expand the repertoire of H genes and enable strategies that are more effective and durable over the long-term. New sources of Hessian fly resistance have been identified from tetraploid (T. turgidum L., AABB) and hexaploid (T. aestivum, AABBDD) wheat species, as well as from wheat's D-genome donor (Aegilops tauschii Coss., DD). In contrast, diploid einkorn wheat (T. monococcum L., AA) has not been extensively explored for Hessian fly resistance. In this study, we phenotyped 506 T. monococcum accessions belonging to 2 subspecies, T. monococcum L. subsp. monococcum (205 accessions) and T. monococcum subsp. aegilopoides (Link) Thell. (301 accessions), for resistance against 2 predominant Hessian fly biotypes, L and GP (Great Plains). Three and 6 accessions belonging to subsp. monococcum and aegilopoides, respectively, showed > 70% resistance. These accessions provide additional resources for improving wheat cultivars as mitigating strategies for Hessian fly management.

Clubroot-Induced Changes in the Root and Rhizosphere Microbiome of Susceptible and Resistant Canola.

Clubroot is a soilborne disease of canola (Brassica napus) and other crucifers caused by the obligate parasite Plasmodiophora brassicae. In western Canada, clubroot is usually managed by planting-resistant cultivars, but the emergence of resistance-breaking pathotypes of P. brassicae represents a major threat to sustainable canola production. The rhizosphere and root contain beneficial microorganisms that can improve plant health. In this study, we evaluated the effect of two P. brassicae isolates (termed A and B) with different levels of virulence on the root and rhizosphere microbiomes of clubroot-resistant and clubroot-susceptible canola. Additionally, potential biocontrol microorganisms were identified based on taxa antagonistic to clubroot. Although both P. brassicae isolates were classified as pathotype 3A, isolate A caused a higher disease severity index in the resistant canola genotype compared with isolate B. Metabarcoding analysis indicated a shift in the bacterial and fungal communities in response to inoculation with either field isolate. Root endophytic bacterial and fungal communities responded to changes in inoculation, isolate type, sampling time, and canola genotype. In contrast, fungal communities associated with the rhizosphere exhibited significant differences between sampling times, while bacterial communities associated with the rhizosphere exhibited low variability.

Comparative Transcriptomic Analysis of Soybean Cyst Nematode Inbred Populations Non-adapted or Adapted on Soybean rhg1-a/Rhg4-Mediated Resistance.

Soybean cyst nematode (SCN, Heterodera glycines) is most effectively managed through planting resistant soybean cultivars, but the repeated use of the same resistance sources has led to a widespread emergence of virulent SCN populations that can overcome soybean resistance. Resistance to SCN HG type 0 (Race 3) in soybean cultivar Forrest is mediated by an epistatic interaction between the soybean resistance genes rhg1-a and Rhg4. We previously developed two SCN inbred populations by mass-selecting SCN HG type 0 (Race 3) on susceptible and resistant recombinant inbred lines, derived from a cross between Forrest and the SCN-susceptible cultivar Essex, which differ for Rhg4. To identify SCN genes potentially involved in overcoming rhg1-a/Rhg4-mediated resistance, we conducted RNA sequencing on early parasitic juveniles of these two SCN inbred populations infecting their respective hosts, only to discover a handful of differentially expressed genes (DEGs). However, in a comparison with early parasitic juveniles of an avirulent SCN inbred population infecting a resistant host, we discovered 59 and 171 DEGs uniquely up- or downregulated in virulent parasitic juveniles adapted on the resistant host. Interestingly, the proteins coded by these 59 DEGs included vitamin B-associated proteins (reduced folate carrier, biotin synthase, and thiamine transporter) and nematode effectors known to play roles in plant defense suppression, suggesting that virulent SCN may exert a heightened transcriptional response to cope with enhanced plant defenses and an altered nutritional status of a resistant soybean host. [Formula: see text] Copyright © 2024 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.

Registration of CDL‐111 and CDL‐167 oat germplasm lines with pyramided adult plant crown rust resistance

AbstractOat (Avena sativa) production worldwide is constrained by crown rust (caused by Puccinia coronata f. sp. avenae), which can cause significant yield losses. The disease is often controlled by spraying fungicides or planting resistant cultivars. Developing host resistance, however, is a challenge due to the high genetic variability of the pathogen. Race‐specific resistance usually succumbs to new races in just a few years. As such, the USDA‐ARS Cereal Disease Laboratory developed mapping populations to identify adult plant resistance (APR) loci from Avena sativa donors. Resistant lines from the mapping populations were selected and crossed with buckthorn (Rhamnus cathartica L.) nursery selection lines BT1020‐1‐1 and BT1021‐1‐1, which possess a different gene for crown rust resistance derived from Avena strigosa. From the crosses, CDL‐111 (Reg. no. GP‐122, PI 702639) and CDL‐167 (Reg. no. GP‐123, PI 702640), both containing three APR quantitative trait loci, were selected as germplasm for resistance breeding. High‐throughput markers for selection were developed and implemented in pyramiding the APR loci.

Biology, Ecology, and Management of Flea Beetles in Brassica Crops.

Brassica vegetable and oilseed crops are attacked by several different flea beetle species (Chrysomelidae: Alticini). Over the past decades, most research has focused on two Phyllotreta species, Phyllotreta striolata and Phyllotreta cruciferae, which are major pests of oilseed rape in North America. More recently, and especially after the ban of neonicotinoids in the European Union, the cabbage stem flea beetle, Psylliodes chrysocephala, has become greatly important and is now considered to be the major pest of winter oilseed rape in Europe. The major challenges to flea beetle control are the prediction of population dynamics in the field, differential susceptibility to insecticides, and the lack of resistant plant cultivars and other economically viable alternative management strategies. At the same time, many fundamental aspects of flea beetle biology and ecology, which may be relevant for the development of sustainable control strategies, are not well understood. This review focuses on the interactions between flea beetles and plants and summarizes the literature on current management strategies with an emphasis on the potential for biological control in flea beetle management.

Biological Control as Part of the Soybean Integrated Pest Management (IPM): Potential and Challenges

Soybean production is usually performed on large scales, requiring simple but efficient pest management to be successful. Soybean fields are inhabited by several species of arthropods, demanding constant development of management practices to prevent pest outbreaks. More recently, stink bugs have become the most important pest group of soybeans in the Neotropics, responsible for up to 60% of the applied insecticides in Brazil. Natural enemies represent an important mortality factor that can keep the damage caused by stink bugs below the economic threshold levels without additional control actions. Thus, Conservation Biological Control (CBC) strategies can be adopted to preserve or even promote the increase in such natural enemies in the fields, or alternatively, massive releases of biocontrol agents in Augmentative Biological Control (ABC) programs could be adopted. Simple practices such as reducing insecticide use (with the adoption of economic thresholds), prioritizing harmless insecticides or biopesticides, and planting resistant soybean cultivars have been adopted in Brazil with positive results. The challenges to increasing the adoption of more complex stink bug management in commodity crops such as soybean may be overcome using the more recent economic incentives in the global agenda of decarbonized agriculture. The potential and challenges of conservation and augmentative biological control are further discussed in this review.

Control of Bacterial Wilt (Ralstonia solanacearum) and Reduction of Ginger Yield Loss through Integrated Management Methods in Southwestern Ethiopia

Background: Bacterial wilt incited by Ralstonia solanacearum is the most important disease affecting ginger production in southwestern Ethiopia. The unavailability of disease-free planting materials, resistant cultivars, and effective chemical compounds are the key constraints in managing the disease. Objective: The study was initiated to determine the effect of integrated management methods on bacterial wilt disease and yield loss of ginger through combining hot water, bio-fumigation, soil-solarization and chemical pesticides. Methods: A total of seven treatment combinations comprising hot water, bio-fumigation, soil-solarization, Mancozeb, and bleaching powder were tested in a randomized complete block design in three replications. Data on disease incidence, growth, yield, and yield components were recorded from randomly selected plants. Results: The use of Mancozeb for seed socking and soil drenching combined with bio-fumigation and soil-solarization reduced the incidence of bacterial wilt by 63.3% and enhanced the rhizome yield by 66.8%. Rhizome and soil treatment using bleaching powder along with soil bio-fumigation also reduced the disease incidence by 38.9% and increased ginger yield by 61.5%. It also provided the highest (6678.7%) marginal rate of return of any treatment combination tested in the experiment. Disease incidence was highly significantly and inversely (r= -0.98**) correlated with rhizome yield. The regression slope estimated that 83.4% of ginger yield loss was associated with bacterial wilt disease. Conclusion: A combined application of Mancozeb, bio-fumigation and soil-solarization can be used to control ginger bacterial wilt. Alternatively, bleaching powder for rhizome and soil treatment in conjunction with bio-fumigation can be employed as an integrated management system against the disease.

Control of Bacterial Wilt (Ralstonia solanacearum) and Reduction of Ginger Yield Loss through Integrated Management Methods in Southwestern Ethiopia

Background: Bacterial wilt incited by Ralstonia solanacearum is the most important disease affecting ginger production in southwestern Ethiopia. Unavailability of disease-free planting materials, resistant cultivars, and effective chemical compounds are the key constraints in managing the disease. Objective: The study was initiated to determine the effect of integrated management methods on bacterial wilt disease and yield loss of ginger through combining hot water, bio-fumigation, soil-solarization and chemical pesticides. Methods: A total of seven treatment combinations comprising hot water, bio-fumigation, soil-solarization, Mancozeb, and bleaching powder were tested in a randomized complete block design in three replications. Data on disease incidence, growth, yield, and yield components were recorded from randomly selected plants. Results: The use of Mancozeb for seed socking and soil drenching combined with bio-fumigation and soil-solarization reduced the incidence of bacterial wilt by 63.3% and enhanced the rhizome yield by 66.8%. Rhizome and soil treatment using bleaching powder along with soil bio-fumigation also reduced the disease incidence by 38.9% and increased ginger yield by 61.5%. It also provided the highest (6678.7%) marginal rate of return of any treatment combination tested in the experiment. Disease incidence was highly significantly and inversely (r= -0.98**) correlated with rhizome yield. The regression slope estimated that 83.4% of ginger yield loss was associated with the bacterial wilt disease. Conclusion: A combined application of Mancozeb, bio-fumigation and soil-solarization can be used to control ginger bacterial wilt. Alternatively, bleaching powder for rhizome and soil treatment in conjunction with bio-fumigation can be employed as an integrated management system against the disease.

Genetic Variation in Common Bunt Resistance in Synthetic Hexaploid Wheat.

Common bunt (caused by Tilletia caries and T. Foetida) is a major wheat disease. It occurs frequently in the USA and Turkey and damages grain yield and quality. Seed treatment with fungicides is an effective method to control this disease. However, using fungicides in organic and low-income fields is forbidden, and planting resistant cultivars are preferred. Due to the highly effective use of fungicides, little effort has been put into breeding resistant genotypes. In addition, the genetic diversity for this trait is low in modern wheat germplasm. Synthetic wheat genotypes were reported as an effective source to increase the diversity in wheat germplasm. Therefore, a set of 25 synthetics that are resistant to the Turkish common bunt race were evaluated against the Nebraska common bunt race. Four genotypes were found to be very resistant to Nebraska's common bunt race. Using differential lines, four isolines carrying genes, Bt10, Bt11, Bt12, and Btp, were found to provide resistance against both Turkish and Nebraska common bunt races. Genotypes carrying any or all of these four genes could be used as a source of resistance in both countries. No correlation was found between common bunt resistance and some agronomic traits, which suggests that common bunt resistance is an independent trait.

Xylella fastidiosa in Europe: From the Introduction to the Current Status

Xylella fastidiosa is xylem-limited bacterium capable of infecting a wide range of host plants, resulting in Pierce's disease in grapevine, citrus variegated chlorosis, olive quick decline syndrome, peach phony disease, plum leaf scald, alfalfa dwarf, margin necrosis and leaf scorch affecting oleander, coffee, almond, pecan, mulberry, red maple, oak, and other types of cultivated and ornamental plants and forest trees. In the European Union, X. fastidiosa is listed as a quarantine organism. Since its first outbreak in the Apulia region of southern Italy in 2013 where it caused devastating disease on Olea europaea (called olive leaf scorch and quick decline), X. fastidiosa continued to spread and successfully established in some European countries (Corsica and PACA in France, Balearic Islands, Madrid and Comunitat Valenciana in Spain, and Porto in Portugal). The most recent data for Europe indicates that X. fastidiosa is present on 174 hosts, 25 of which were newly identified in 2021 (with further five hosts discovered in other parts of the world in the same year). From the six reported subspecies of X. fastidiosa worldwide, four have been recorded in European countries (fastidiosa, multiplex, pauca, and sandyi). Currently confirmed X. fastidiosa vector species are Philaenus spumarius, Neophilaenus campestris, and Philaenus italosignus, whereby only P. spumarius (which has been identified as the key vector in Apulia, Italy) is also present in Americas. X. fastidiosa control is currently based on pathogen-free propagation plant material, eradication, territory demarcation, and vector control, as well as use of resistant plant cultivars and bactericidal treatments.

The Spatial Distribution and Genetic Diversity of the Soybean Cyst Nematode, Heterodera glycines, in China: It Is Time to Take Measures to Control Soybean Cyst Nematode.

The continuous evolution and spread of virulent forms of the soybean cyst nematode (SCN) driven by the environment and anthropogenic intervention is a serious threat to the soybean production worldwide, including China. Especially in China, the implemented measures to control SCN are insufficient for sustainable agricultural development yet. We summarized our knowledge about the spread and spatial distribution of SCN in China and the virulence diversity in the main soybean growing areas. To reveal the genetic relatedness and diversity of SCN populations, we re-sequenced 53 SCN genomes from the Huang-Huai Valleys, one of the two main soybean growing areas in China. We identified spreading patterns linked to the local agroecosystems and topographies. Moreover, we disclosed the first evidence for the selection of complex virulence in the field even under low selection pressure in an example from North Shanxi. SCN is present in all soybean growing areas in China but SCN susceptible cultivars are still largely grown indicating that SCN-related damage and financial loss have not received the attention they deserve yet. To prevent increasing yield losses and to improve the acceptance of resistant cultivars by the growers, we emphasized that it is time to accelerate SCN resistance breeding, planting resistant cultivars to a larger extent, and to support farmers to implement a wider crop rotation for sustainable development of the soybean production in China.

Management strategies and distribution of Aphanomyces root rot of alfalfa (Medicago sativa), a continuing threat to forage production in the United States

AbstractAlfalfa (Medicago sativa) is one of several legumes that is affected by Aphanomyces root rot (ARR) caused by Aphanomyces euteiches. Symptoms of ARR on alfalfa seedlings include a yellow‐grey discolouration of roots, rotting and loss of lateral roots, stunted growth, chlorotic foliage and reduction of nitrogen‐producing nodules on roots. Infection can also occur on adult plants leading to loss of lateral roots and nodules. At the seedling stage, ARR decreases alfalfa stand establishment, and field longevity is reduced when adult plants are infected. A. euteiches is an oomycete pathogen that has motile zoospores and thick‐walled oospores that can survive for many years in soil. Two races are currently recognized by pathogenicity on differential alfalfa check cultivars. Most alfalfa cultivars contain race 1 resistance, but there is an increasing development of cultivars with resistance to race 2. Management strategies include planting resistant cultivars, avoiding planting in fields with poor drainage and rotating crops with nonhost plants.

Biochemical and molecular diagnosis of different tomato cultivars susceptible and resistant to Tuta absoluta (Meyrick) infestation

Resistant plant cultivars which used in breeding programs are considered one of the modern integrated management programs to reduce the usage of synthetic insecticides and environmental contamination the present study aimed to characterize the resistant and susceptible tomato cultivars to Tuta absoluta based on biochemical and molecular levels, in Egypt. The biochemical characters of the tested tomato cultivars (tomato- 86, tomato- Alissa, tomato- Fayarouz, tomato- Omniya, tomato- 036, tomato- GS) were determined colorimetrically and characterized by using native- polyacrylamide gel electrophoresis (PAGE) and agarose gel. Our results showed that there were variations highly significant in all biochemical constituents of the resistant tomato cultivar (tomato- 86) compared with the susceptible one (tomato- GS). Also, native-(PAGE) for peroxidase (POD) isoenzymes techniques of the tested tomato cultivars showed variations in protein band numbers and densities in tomato-86 resistant compared with tomato-GS susceptible to Tuta absoluta infestation. The correlation coefficient between total phenols and peroxidases in infested tomato leaves and percentages of damaged leaves with the tested insect pest was negative and highly significant, while in case of total proteins and reducing sugars in infested tomato leaves as well as lycopene contents in infested tomato fruits was positive, highly significant and significant, respectively. The correlation coefficient between tomato yield means and the infested fruit percentage with T. absoluta larvae was negative and highly significant. Respecting molecular diagnosis random amplified polymorphism DNA- polymerase chain reaction (RAPD- PCR), the results demonstrated that the presence of polymorphism in the resistant tomato cultivar (tomato- 86) compared with (tomato- GS), the most susceptible to the tested insect pest infestation.

Phenotypic and molecular screening of dry bean (Phaseolus vulgaris L.) breeding lines for resistance to bean common mosaic virus and bean common mosaic necrosis virus

Bean common mosaic virus (BCMV) and bean common mosaic necrosis virus (BCMNV) are among the most economically important virus species infecting common bean. The use of resistant plant cultivars is the most effective way to control these viruses. National dry bean breeding studies have been conducted by seven different governmental agricultural research institutes in Turkey, and advanced breeding lines have been developed by using the selected local dry bean populations and crossing studies. In this study, 204 breeding lines were tested for resistance levels to BCMV and BCMNV. Initially, BCMNV NL-3 and BCMV NL-4 strains were individually sap-inoculated onto the leaves of bean plants belonging to each breeding lines with 10 replications, and the reactions of plants were evaluated for symptomatic appearance of virus infection 21 days after inoculation. Additionally, phenotypic evaluation was confirmed by molecular markers linked to resistance genes. As a result of the study, 153 breeding lines were found to involve the dominant I gene whereas four and five of the tested lines had the recessive genes bc-1² and bc-2², respectively. In conclusion, it was emphasized that these breeding lines could be registered after evaluating them in terms of yield and quality. Also, the use of seeds of the resistant lines to supply the source of virus-resistance in breeding studies and maintaining their seeds at the national genebank were recommended.

Biological responses of Tetranychus urticae to five pepper cultivars at two phenological stages of host plants

The two-spotted spider mite, Tetranychus urticae Koch (Acari: Tetranychidae) is an important pest of pepper (Capsicum annuum L.). Control of this pest is usually dependent on chemical pesticides. The use of resistant plant cultivars in conjugation with other control tactics generates more effective and long lasting results in management of many pests. In this study we used two-sex life table to evaluate the performance of T. urticae on five pepper cultivars (11983, ES4, Hashemi, Mahali and USL) before and after blooming of host plants. The results showed that the immature time, adult longevity and fecundity differed significantly among cultivars. Before blooming on 11983, the values for the intrinsic rate of increase (r) and the finite rate of increase (λ) were 0.0645 and 1.066 day-1 respectively, which were significantly the lowest; the highest r and λ values was recorded on ES4 which were 0.1347 and 1.144 day-1 respectively. After blooming there was no significant difference in these values among cultivars except for Mahali in which these values were significantly the highest (0.0751 and 1.078 day-1 respectively). Comparing between the phenological stages of host plants (before and after blooming) indicated that after blooming all of the tested pepper cultivars were more resistant to T. urticae. In summary, among the different cultivars tested, the most suitable was ES4 and the least suitable was 11983 before blooming of host plants. After blooming the suitability of host plants changed and decreased significantly.

Effect of Soy Leaf Flavonoids on Pea Aphid Probing Behavior.

Simple SummaryFlavonoids are plant phenolic compounds whose biological activities include participation in plant responses to various stresses of biological and environmental origins, including protection against insect herbivore attack. We were interested in whether the specific flavonoids detected in soybean leaves have the potential to discourage the pea aphid from infesting other leguminous plants, peas in particular. We immersed the pea leaves in ethanolic solutions of the flavonoids apigenin, daidzein, genistein and kaempferol, offered them to the pea aphids and observed their behavior when they probed plant tissues with their piercing–sucking mouthparts. We discovered that aphids readily probed the pea leaves whether they were treated with flavonoids or not. However, later on, the behavior of the aphids changed depending on the flavonoid applied. Apigenin, daidzein and kaempferol caused a decrease in the intensity of plant sap ingestion. In addition, daidzein and kaempferol made the finding of sap-transporting vessels more difficult for aphids. In contrast, genistein did not affect the pea aphids’ feeding activity. Our findings provide the plant breeders and plant protection services with information on what direction their efforts should take to protect leguminous plants against aphids in a sustainable and environmentally friendly way.Flavonoids detected in soybean Glycine max (L.) Merr. (Fabaceae) cause various alterations in the metabolism, behavior, and development of insect herbivores. The pea aphid Acyrthosiphon pisum (Harris) (Hemiptera: Aphididae) poses potential threat to soybeans, but the effect of individual flavonoids on its feeding-associated behavior is relatively unknown. We monitored probing behavior (stylet penetration activities) of A. pisum on its preferred host plant, Pisum sativum L. untreated (control) and treated with 0.1% ethanolic solutions of flavonoids apigenin, daidzein, genistein, and kaempferol. We applied the electrical penetration graph (electropenetrography, EPG) technique, which visualizes the movements of aphid stylets within plant tissues. None of the applied flavonoids affected the propensity to probe the plants by A. pisum. However, apigenin enhanced the duration of probes in non-phloem tissues, which caused an increase in the frequency and duration of stylet mechanics derailment and xylem sap ingestion but limited the ingestion of phloem sap. Daidzein caused a delay in reaching phloem vessels and limited sap ingestion. Kaempferol caused a reduction in the frequency and duration of the phloem phase. Genistein did not affect aphid probing behavior. Our findings provide information for selective breeding programs of resistant plant cultivars to A. pisum.

Defense-Related Gene Expression Following an Orthotospovirus Infection Is Influenced by Host Resistance in Arachis hypogaea.

Planting resistant cultivars is the most effective tactic to manage the thrips-transmitted tomato spotted wilt orthotospovirus (TSWV) in peanut plants. However, molecular mechanisms conferring resistance to TSWV in resistant cultivars are unknown. In this study, transcriptomes of TSWV-susceptible (SunOleic 97R) and field-resistant (Tifguard) peanut cultivars with and without TSWV infection were assembled and differentially expressed genes (DEGs) were compared. There were 4605 and 2579 significant DEGs in SunOleic 97R and Tifguard, respectively. Despite the lower number of DEGs in Tifguard, an increased proportion of defense-related genes were upregulated in Tifguard than in the susceptible cultivar. Examples included disease resistance (R) proteins, leucine-rich repeats, stilbene synthase, dicer, and calmodulin. Pathway analysis revealed the increased downregulation of genes associated with defense and photosynthesis in the susceptible cultivar rather than in the resistant cultivar. These results suggest that essential physiological functions were less perturbed in the resistant cultivar than in the susceptible cultivar and that the defense response following TSWV infection was more robust in the resistant cultivar than in the susceptible cultivar.

Genomic Profiling of Virulence in the Soybean Cyst Nematode Using Single-Nematode Sequencing.

Soybean cyst nematode (SCN) is one of the most important diseases in soybean. Currently, the main management strategy relies on planting resistant cultivars. However, the overuse of a single resistance source has led to the selection of virulent SCN populations, although the mechanisms by which the nematode overcomes the resistance genes remain unknown. In this study, we used a nematode-adapted single-cell RNA-seq approach to identify SCN genes potentially involved in resistance breakdown in Peking and PI 88788 parental soybean lines. We established for the first time the full transcriptome of single SCN individuals allowing us to identify a list of putative virulence genes against both major SCN resistance sources. Our analysis identified 48 differentially expressed putative effectors (secreted proteins required for infection) alongside 40 effectors showing evidence of novel structural variants, and 11 effector genes containing phenotype-specific sequence polymorphisms. Additionally, a differential expression analysis revealed an interesting phenomenon of coexpressed gene regions with some containing putative effectors. The selection of virulent SCN individuals on Peking resulted in a profoundly altered transcriptome, especially for genes known to be involved in parasitism. Several sequence polymorphisms were also specific to these virulent nematodes and could potentially play a role in the acquisition of nematode virulence. On the other hand, the transcriptome of virulent individuals on PI 88788 was very similar to avirulent ones with the exception of a few genes, which suggest a distinct virulence strategy to Peking.

Assessing Genetic Resistance in Wheat to Black Point Caused by Six Fungal Species in the Yellow and Huai Wheat Area of China.

The most effective and environmentally sustainable method for controlling black point disease of wheat (Triticum aestivum L.) is to plant resistant cultivars. To identify sources of resistance to black point, 165 selected cultivars/lines were inoculated with isolates of six fungal species (Bipolaris sorokiniana, Alternaria alternata, Fusarium equiseti, Exserohilum rostratum, Epicoccum sorghinum, and Curvularia spicifera) known to cause black point in wheat using spore suspensions under controlled field conditions in 2016 and 2017. Inoculation of the isolates significantly increased the incidence of black point in the cultivars/lines compared with those grown under natural field conditions (NFC). The disease incidence of plants inoculated with B. sorokiniana and E. rostratum was 15.5% and 18.8% in 2016, and 20.4% and 23.0% in 2017, whereas those under NFC were 5.7% (2016) and 1.5% (2017), respectively. Furthermore, disease symptoms varied with pathogen. Among the 165 cultivars/lines tested, 3.6%, 50.9%, 60.0%, 1.8%, 47.3%, and 58.8% were resistant to B. sorokiniana, A. alternata, F. equiseti, E. rostratum, E. sorghinum, and C. spicifera, respectively. In addition, we identified one line ('SN530070') resistant to black point caused by all six pathogens. This is the first study to assess resistance to wheat black point caused by six fungal species under controlled conditions. The black point-resistant cultivars/lines could be useful in breeding and also in research on the mechanisms of resistance to black point.