Plant Virus Diseases Research Articles

Genetic diversity, distribution, and structure of Bemisia tabaci whitefly species in potential invasion and hybridization regions of East Africa.

Outbreaks of whitefly, Bemisia tabaci species in East and Central Africa, have become increasingly prevalent during the previous 25 years and are responsible for driving the spread of plant-virus diseases, such as cassava mosaic disease and cassava brown steak disease. Epidemics of these diseases have expanded their ranges over the same period, spreading from Uganda into other sub-Saharan African countries. It was hypothesised that a highly abundant 'invader' population of B. tabaci was responsible for spreading these diseases from Uganda to neighbouring countries and potentially hybridising with the resident cassava B. tabaci populations. Here, we test this hypothesis by investigating the molecular identities of the highly abundant cassava B. tabaci populations from their supposed origin in Uganda, to the northern, central, eastern and coastal regions of Tanzania. Partial mitochondrial cytochrome oxidase I (mtCOI) barcoding sequences and nuclear microsatellite markers were used to analyse the population genetic diversity and structure of 2734 B. tabaci collected from both countries and in different agroecological zones. The results revealed that: (i) the putative SSA1 species is structured according to countries, so differ between them. (ii) Restricted gene flow occurred between SSA1-SG3 and both other SSA1 subgroups (SG1 and SG2), even in sympatry, demonstrating strong barriers to hybridization between those genotypes. (iii) Not only B. tabaci SSA1-(SG1 and SG2) was found in highly abundant (outbreak) numbers, but B. tabaci SSA1-SG3 and the Indian Ocean (IO) species were also recorded in high numbers in several sites in Tanzania. (iv) The SSA1-(SG1 and SG2) species was distributed in both countries, but in Tanzania, the B. tabaci IO and SSA1-SG3 species predominated. These data confirm that multiple, local Tanzanian B. tabaci species produce highly abundant populations, independent of the spread of the putative invasive B. tabaci SSA1-(SG1 and SG2) populations.

Scoring symptoms of a plant viral disease

A recommendation of: Alexander Silva, Maria Elker Montoya, Constanza Quintero, Juan Cuasquer, Joe Tohme, Eduardo Graterol, Maribel Cruz, Mathias Lorieux Genetic bases of resistance to the rice hoja blanca disease deciphered by a QTL approach https://doi.org/10.1101/2022.11.07.515427

Induction of systemic resistance against cucumber mosaic virus (CMV) and tomato yellow leaf curl virus (TYLCV) in tomato

Plant viruses are a major threat to food crop security worldwide and cost the global economy several billion dollars annually. Currently, no antiviral measures or compounds are available. Chemicals and beneficial microorganisms can be used to induce resistance against various pathogens such as viruses and offer promising solutions for managing crop diseases. Beneficial microbes have attracted considerable attention because of their high potential for controlling viral plant diseases. This study examined the effectiveness of the exogenous application of natural and chemical compounds in enhancing tomato plant resistance to tomato yellow leaf curl and cucumber mosaic viruses. Ascophyllum nodosum extract, Piriformospora indica fungus, salicylic acid, jasmonic acid, and skimmed milk were used to treat tomato plants, either separately or in combination. The results indicated that all treatments effectively controlled the accumulation of both viruses. The plant growth parameters also increased concurrently with this decrease. A 25.58-fold reduction in CMV levels was achieved by skimmed milk treatment, whereas jasmonic acid treatment reduced TYLCV levels by 19.13-fold.

Non-random distribution of maax pepper plants (Capsicum annuum var. glabriusculum L.) in Mayan homegardens: impact on plant size, fruit yield and viral diseases

Non-random distribution of maax pepper plants (Capsicum annuum var. glabriusculum L.) in Mayan homegardens: impact on plant size, fruit yield and viral diseases

Pharmacodynamic Acnalysis of Anti-chitosan in the Prevention and Treatment of Tomato Virus Diseases

Viral diseases are primary diseases of tomatoes with an occurrence rate generally reaching above 30% and up to 90% in severe cases. Control of viral diseases is an enormous challenge in crop protection. Application of insecticide for preventing virus transmission through reduction of insect vectors is considered an useful means. The crop breeding technology and tissue culture are also employed to generate viral resistant cultivar or virus-free seedlings. However, these methods are often less effective in practice because of viral mutations. It has been reported that chitosan, as an efficient plant resistance-inducing elicitor, can inhibit the infection of pathogenic bacteria, induce the production of phytochemicals and stimulate plant self-resistance, and has been widely used in the prevention and treatment of viral diseases. In this study, by investigating the field disease index and monitoring the form and content of the virus in the diseased leaves and new leaves before each application, it was clarified that continuous spraying of 0.5% chitosan water solution for 3 times at an interval of 7 days has a significant control effect of preventing tomato virus disease. Negative staining electron microscope observation method visually showed the existence and changes of virus in leaves; RT-PCR method analyzed the virus types as tomato spotted wilt virus (TSWV), tomato chlorosis virus (ToCV), tobacco mosaic virus (TMV); The qRT-PCR method further clarified that the inhibition rates of 0.5% chitosan solution on tomato spotted wilt and tomato chlorosis virus were 75.31% and 67.18%, respectively. It is concluded from our tests that the plant defence elicitor chitosan (a.i. 0.5%) is able to inhibit virus replication in crop cells and prevent the aggravation of tomato plant virus disease symptoms. Therefore, the strategy for the management of tomato virus disease is to apply the inducer chitosan regularly to maintain a low virus titer and prevent the occurrence and spread of virus disease.

In-depth study of tomato and weed viromes reveals undiscovered plant virus diversity in an agroecosystem

BackgroundIn agroecosystems, viruses are well known to influence crop health and some cause phytosanitary and economic problems, but their diversity in non-crop plants and role outside the disease perspective is less known. Extensive virome explorations that include both crop and diverse weed plants are therefore needed to better understand roles of viruses in agroecosystems. Such unbiased exploration is available through viromics, which could generate biological and ecological insights from immense high-throughput sequencing (HTS) data.ResultsHere, we implemented HTS-based viromics to explore viral diversity in tomatoes and weeds in farming areas at a nation-wide scale. We detected 125 viruses, including 79 novel species, wherein 65 were found exclusively in weeds. This spanned 21 higher-level plant virus taxa dominated by Potyviridae, Rhabdoviridae, and Tombusviridae, and four non-plant virus families. We detected viruses of non-plant hosts and viroid-like sequences and demonstrated infectivity of a novel tobamovirus in plants of Solanaceae family. Diversities of predominant tomato viruses were variable, in some cases, comparable to that of global isolates of the same species. We phylogenetically classified novel viruses and showed links between a subgroup of phylogenetically related rhabdoviruses to their taxonomically related host plants. Ten classified viruses detected in tomatoes were also detected in weeds, which might indicate possible role of weeds as their reservoirs and that these viruses could be exchanged between the two compartments.ConclusionsWe showed that even in relatively well studied agroecosystems, such as tomato farms, a large part of very diverse plant viromes can still be unknown and is mostly present in understudied non-crop plants. The overlapping presence of viruses in tomatoes and weeds implicate possible presence of virus reservoir and possible exchange between the weed and crop compartments, which may influence weed management decisions. The observed variability and widespread presence of predominant tomato viruses and the infectivity of a novel tobamovirus in solanaceous plants, provided foundation for further investigation of virus disease dynamics and their effect on tomato health. The extensive insights we generated from such in-depth agroecosystem virome exploration will be valuable in anticipating possible emergences of plant virus diseases and would serve as baseline for further post-discovery characterization studies.5s1csuTeBEFLkorHCziRqaVideo

Small Talk: On the Possible Role of Trans-Kingdom Small RNAs during Plant-Virus-Vector Tritrophic Communication.

Small RNAs (sRNAs) are the hallmark and main effectors of RNA silencing and therefore are involved in major biological processes in plants, such as regulation of gene expression, antiviral defense, and plant genome integrity. The mechanisms of sRNA amplification as well as their mobile nature and rapid generation suggest sRNAs as potential key modulators of intercellular and interspecies communication in plant-pathogen-pest interactions. Plant endogenous sRNAs can act in cis to regulate plant innate immunity against pathogens, or in trans to silence pathogens' messenger RNAs (mRNAs) and impair virulence. Likewise, pathogen-derived sRNAs can act in cis to regulate expression of their own genes and increase virulence towards a plant host, or in trans to silence plant mRNAs and interfere with host defense. In plant viral diseases, virus infection alters the composition and abundance of sRNAs in plant cells, not only by triggering and interfering with the plant RNA silencing antiviral response, which accumulates virus-derived small interfering RNAs (vsiRNAs), but also by modulating plant endogenous sRNAs. Here, we review the current knowledge on the nature and activity of virus-responsive sRNAs during virus-plant interactions and discuss their role in trans-kingdom modulation of virus vectors for the benefit of virus dissemination.

Novel cinnamic acid derivatives as a versatile tool for developing agrochemicals for controlling plant virus and bacterial diseases by enhancing plant defense responses.

Plant pathogens have led to large yield and quality losses in crops worldwide. The discovery and study of novel agrochemical alternatives based on the chemical modification of bioactive natural products is a highly efficient approach. Here, two series of novel cinnamic acid derivatives incorporating diverse building blocks with alternative linking patterns were designed and synthesized to identify their antiviral capacity and antibacterial activity. The bioassay results demonstrated that most cinnamic acid derivatives had excellent antiviral competence toward tobacco mosaic virus (TMV) in vivo, especially compound A5 (median effective concentration [EC50 ] = 287.7μg mL-1 ), which had a notable protective effect against TMV when compared with the commercial virucide ribavirin (EC50 =622.0μg mL-1 ). In addition, compound A17 had a protective efficiency of 84.3% at 200 μg mL-1 against Xac in plants. Given these outstanding results, the engineered title compounds could be regarded as promising leads for controlling plant virus and bacterial diseases. Preliminary mechanistic studies suggest that compound A5 could enhance the host's defense responses by increasing the activity of defense enzymes and upregulating defense genes, thereby suppressing phytopathogen invasion. This research lays a foundation for the practical application of cinnamic acid derivatives containing diverse building blocks with alternative linking patterns in pesticide exploration. © 2023 Society of Chemical Industry.

Occurrence, Distribution, and Management of Aphid-Transmitted Viruses in Cucurbits in Spain.

The effectiveness of pest and disease management in crops relies on knowledge about their presence and distribution in crop-producing areas. Aphids and whiteflies are among the main threats to vegetable crops since these hemipterans feed on plants, causing severe damage, and are also able to transmit a large number of devastating plant viral diseases. In particular, the widespread occurrence of aphid-transmitted viruses in cucurbit crops, along with the lack of effective control measures, makes surveillance programs and virus epidemiology necessary for providing sound advice and further integration into the management strategies that can ensure sustainable food production. This review describes the current presence and distribution of aphid-transmitted viruses in cucurbits in Spain, providing valuable epidemiological information, including symptom expressions of virus-infected plants for further surveillance and viral detection. We also provide an overview of the current measures for virus infection prevention and control strategies in cucurbits and indicate the need for further research and innovative strategies against aphid pests and their associated viral diseases.

Discovery of Flavone Derivatives Containing Carboxamide Fragments as Novel Antiviral Agents.

Plant virus diseases seriously affect the yield and quality of agricultural products, and their prevention and control are difficult. It is urgent to develop new and efficient antiviral agents. In this work, a series of flavone derivatives containing carboxamide fragments were designed, synthesized, and systematically evaluated for their antiviral activities against tobacco mosaic virus (TMV) on the basis of a structural-diversity-derivation strategy. All the target compounds were characterized by 1H-NMR, 13C-NMR, and HRMS techniques. Most of these derivatives displayed excellent in vivo antiviral activities against TMV, especially 4m (inactivation inhibitory effect, 58%; curative inhibitory effect, 57%; and protection inhibitory effect, 59%), which displayed similar activity to ningnanmycin (inactivation inhibitory effect, 61%; curative inhibitory effect, 57%; and protection inhibitory effect, 58%) at 500 μg mL-1; thus, it emerged as a new lead compound for antiviral research against TMV. Antiviral mechanism research by molecular docking demonstrated that compounds 4m, 5a, and 6b could interact with TMV CP and disturb virus assembly.

Analysis and Optimal Control of the Tungro Virus Disease Spread Model in Rice Plants by Considering the Characteristics of the Virus, Roguing, and Pesticides

Farmers have an essential role in maintaining food security. One of the food crops that occupies a high position in Indonesia is rice. However, farmers often experience problems when cultivating rice plants, one of which is affected by the tungro virus disease in rice plants. The spread of the disease can be controlled by the roguing process and applying pesticides. In this study, an analysis of the model of the spread of tungro virus disease in rice plants took into account the characteristics of the rice tungro spherical virus (RTSV) and rice tungro bacilliform virus (RTBV), as well as control in the form of roguing processes and application of pesticides. The analysis carried out was in the form of dynamic analysis, sensitivity analysis, and optimal control. In addition, numerical simulations were also carried out to describe the results of the analysis. The results showed that the roguing process and the application of pesticides could control the spread of the tungro virus disease. The application is sufficient, at as much as 75%.

Potential risk of plant viruses entering disease cycle in surface water in protected vegetable growing areas of Eastern China.

With the expansion of protected vegetable growing areas (PVGAs), viral plant diseases have become more prevalent, causing severe economic losses to the vegetable production industry in China. At present, researches on plant viruses mainly focus on plants, but there is only a few reports on the species of viruses in surface water from PVGAs. The surface water samples in PVGAs are representative to a certain extent, which has an important reference value for studying the characteristics of plant viruses in surface water. The purpose of this study was to identify the diversity and the possibility of entering disease infection cycle of plant viruses in water samples collected from PVGAs in eastern China. A total of 144 water samples were collected, and eight plant viruses including tobacco mosaic virus (TMV, 8.33%), cucumber green mottle mosaic virus (CGMMV, 33.33%), pepper mild mottle virus (PMMoV, 6.94%), cucumber mosaic virus (CMV, 0.69%), tomato masaic virus (ToMV, 3.47%), tomato mottle mosaic virus (ToMMV, 0.69%), tomato chlorosis virus (ToCV, 4.17%), and tomato yellow leaf curl virus (TYLCV, 5.56%) were examined using RT-PCR and PCR. The species of viruses in surface water varied greatly by location. CGMMV, TMV, ToCV, ToMV, ToMMV, and TYLCV were identified in Shandong, a northern part of Eastern China, whereas only PMMoV was found in Shanghai, a southern part of Eastern China. After healthy tobacco plants were inoculated with the concentrated solutions of TMV, ToMV, CGMMV, and PMMoV, could cause disease in healthy tobacco, indicating that the plant viruses in the concentrated solution have the infectivity, and the plant viruses in surface water have the possibility of entering the infection cycle of disease. The results will improve the understanding of the potential risks of waterborne disease transmission.

On-site and visual detection of sorghum mosaic virus and rice stripe mosaic virus based on reverse transcription-recombinase-aided amplification and CRISPR/Cas12a.

Rapid, sensitive and visual detection of plant viruses is conducive to effective prevention and control of plant viral diseases. Therefore, combined with reverse transcription and recombinase-aided amplification, we developed a CRISPR/Cas12a-based visual nucleic acid detection system targeting sorghum mosaic virus and rice stripe mosaic virus, which cause harm to crop production in field. When the RT-RAA products were recognized by crRNA and formed a complex with LbCas12a, the ssDNA labeled with a quenched green fluorescent molecule will be cleaved by LbCas12a, and then a significant green fluorescence signal will appear. The entire detection process can be completed within 30min without using any sophisticated equipment and instruments. The detection system could detect samples at a dilution of 107, about 104-fold improvement over RT-PCR, so the system was successfully to detect rice stripe mosaic virus in a single leafhopper, which is the transmission vector of the virus. Finally, the CRISPR/Cas12a-based detection system was utilized to on-site detect the two viruses in the field, and the results were fully consistent with that we obtained by RT-PCR in laboratory, demonstrating that it has the application prospect of detecting important crop viruses in the field.

Recent Achievements in Antiviral Agent Development for Plant Protection

Plant virus disease is the second most prevalent plant diseases and can cause extensive loss in global agricultural economy. Extensive work has been carried out on the development of novel antiplant virus agents for preventing and treating plant virus diseases. In this review, we summarize the achievements of the research and development of new antiviral agents in the recent five years and provide our own perspective on the future development in this highly active research field.

Tolerance of plant virus disease: Its genetic, physiological, and epidemiological significance

AbstractThe development and use of tolerance have been proposed as an alternative or complementary method to host resistance in the management of plant diseases, including those caused by viruses. There has been much ambiguity among plant pathologists, plant breeders, and agronomists in the meaning of tolerance and how it can be operationally defined, but a modern consensus seems to have emerged. Tolerance is a relative term that means a limited reduction in host plant fitness (reproduction or survival) in relation to pathogen load throughout or during a defined period of plant development and growth such as the reproductive stage. This emphasizes the need to study reproductive stage disease tolerance. Despite this apparent consensus, there remain questions over the use of model plant systems, the genetic background of tolerance, its physiological expression, and epidemiological consequences of its deployment in crops, in comparison with host resistance. Most examples of tolerance reviewed here are for plant virus systems, although other pathogen taxa are referred to, as is tolerance as a natural phenomenon in wild plants including crop relatives. An argument is made for studying commonalities and interactions in host responses to biotic and abiotic stressors; in particular, whether virus infection can mitigate the impact of heat, cold, drought and salinity stress in plants. Finally, we review the use of mathematical models as a means of evaluating the strategy of using tolerance in disease and crop management.

Mechanisms of Microbial Plant Protection and Control of Plant Viruses.

Plant viral diseases are major constraints causing significant yield losses worldwide in agricultural and horticultural crops. The commonly used methods cannot eliminate viral load in infected plants. Many unconventional methods are presently being employed to prevent viral infection; however, every time, these methods are not found promising. As a result, it is critical to identify the most promising and sustainable management strategies for economically important plant viral diseases. The genetic makeup of 90 percent of viral diseases constitutes a single-stranded RNA; the most promising way for management of any RNA viruses is through use ribonucleases. The scope of involving beneficial microbial organisms in the integrated management of viral diseases is of the utmost importance and is highly imperative. This review highlights the importance of prokaryotic plant growth-promoting rhizobacteria/endophytic bacteria, actinomycetes, and fungal organisms, as well as their possible mechanisms for suppressing viral infection in plants via cross-protection, ISR, and the accumulation of defensive enzymes, phenolic compounds, lipopeptides, protease, and RNase activity against plant virus infection.

Novel trifluoromethylpyridine piperazine derivatives as potential plant activators.

Plant virus diseases seriously affect crop yield, especially tobacco mosaic virus (TMV) and cucumber mosaic virus (CMV). The development of plant immune activators has been an important direction in the innovation of new pesticides. Therefore, we designed and synthesized a series of trifluoromethyl pyridine piperazine derivatives (A1-A27), and explored the action mechanism of active compound. The antiviral activity test showed that compounds A1, A2, A3, A9, A10, A16, A17 and A21 possessed higher activities than commercialized ningnanmycin. Particularly, the in vivo antiviral activity indicated that compound A16 showed the most potent protective activity toward TMV (EC50 = 18.4 μg/mL) and CMV (EC50 = 347.8 μg/mL), compared to ningnanmycin (50.2 μg /mL for TMV, 359.6 μg/mL for CMV). The activities of defense enzyme, label -free proteomic and qRT-PCR analysis showed that compound A16 could enhance the defensive enzyme activities of superoxide dismutase (SOD),polyphenol oxidase (PPO) and phenylalanine ammonialyase (PAL), and activate the phenylpropanoid biosynthesis pathway to strenthen the antiviral activities of tobacco. This study provides reliable support for the development of new antiviral pesticides and potential antiviral mechanism.

Reversion of a resistance-breaking mutation shows reversion costs and high virus diversity at necrotic local lesions.

An instance of host range evolution relevant to plant virus disease control is resistance breaking. Resistance breaking can be hindered by across-host fitness trade-offs generated by negative effects of resistance-breaking mutations on the virus fitness in susceptible hosts. Different mutations in pepper mild mottle virus (PMMoV) coat protein result in the breaking in pepper plants of the resistance determined by the L3 resistance allele. Of these, mutation M138N is widespread in PMMoV populations, despite associated fitness penalties in within-host multiplication and survival. The stability of mutation M138N was analysed by serial passaging in L3 resistant plants. Appearance on passaging of necrotic local lesions (NLL), indicating an effective L3 resistance, showed reversion to nonresistance-breaking phenotypes was common. Most revertant genotypes had the mutation N138K, which affects the properties of the virus particle, introducing a penalty of reversion. Hence, the costs of reversion may determine the evolution of resistance-breaking in addition to resistance-breaking costs. The genetic diversity of the virus population in NLL was much higher than in systemically infected tissues, and included mutations reported to break L3 resistance other than M138N. Infectivity assays on pepper genotypes with different L alleles showed high phenotypic diversity in respect to L alleles in NLL, including phenotypes not reported in nature. Thus, high diversity at NLL may potentiate the appearance of genotypes that enable the colonization of new host genotypes or species. Collectively, the results of this study contribute to better understanding the evolutionary dynamics of resistance breaking and host-range expansions.

Infectious clones of cotton leafroll dwarf virus strains used for genotype evaluation in cotton

AbstractCotton blue disease (CBD) and atypical‐CBD are the most important viral diseases of cotton plants in the southern region of South America. Common and atypical strains of cotton leafroll dwarf virus (CLRDV and CLRDV‐at, respectively) are thought to be causative agents of CBD and atypical‐CBD, respectively. Inoculation of test plants via aphid vectors is difficult, as is determining strains via molecular diagnosis; accordingly, it is difficult for breeders to evaluate the effects of blue disease‐associated virus infections in cotton lineages. In the present study, we attempted to circumvent these difficulties by producing six full‐length cDNA infectious clones from CLRDV and CLRDV‐at strains using the Gibson Assembly protocol. For inoculation of the infectious clones, a vacuum chamber‐mediated agroinfiltration protocol was adapted and applied. Using this protocol, 90%–100% of cotton plants became infected with the clones, which was not possible via syringe‐based agroinfiltration. A genotyping protocol based on RT‐qPCR targeting a specific region of the virus P0 protein was also developed, allowing rapid differentiation of CLRDV and CLRDV‐at. Applying this protocol to 68 field samples revealed that CLRDV‐at was dominant (50%) over CLRDV (5.8%) in single virus infections. These preliminary results imply that CLRDV‐at might occupy the ecological niche of CLRDV in the cotton fields of Brazil.

Nanotechnology for Nanophytopathogens: From Detection to the Management of Plant Viruses.

Plant viruses are the most destructive pathogens which cause devastating losses to crops due to their diversity in the genome, rapid evolution, mutation or recombination in the genome, and lack of management options. It is important to develop a reliable remedy to improve the management of plant viral diseases in economically important crops. Some reports show the efficiency of metal nanoparticles and engineered nanomaterials and their wide range of applications in nanoagriculture. Currently, there are reports for the use of nanoparticles as an antibacterial and antifungal agent in plants and animals too, but few reports as plant antiviral. “Nanophytovirology” has been emerged as a new branch that covers nanobased management approaches to deal with devastating plant viruses. Varied nanoparticles have specific physicochemical properties that help them to interact in various unique and useful ways with viruses and their vectors along with the host plants. To explore the antiviral role of nanoparticles and for the effective management of plant viruses, it is imperative to understand all minute details such as the concentration/dosage of nanoparticles, time of application, application interval, and their mechanism of action. This review focused on different aspects of metal nanoparticles and metal oxides such as their interaction with plant viruses to explore the antiviral role and the multidimensional perspective of nanotechnology in plant viral disease detection, treatment, and management.