We present a unique data set of selected physicochemical parameters characterizing the environment of the Baltic coastal lakes within Polish borders. The peculiarity of the system derives principally from the interaction of the lakes with a sea of relatively low salinity. In contrast to our best understanding of the state of biological knowledge, the abiotic parameters of coastal lakes along the southern Baltic Sea have never previously been so comprehensively supplemented. The database consists of physicochemical properties of 13 coastal lakes based on the analytical assessment of 419 water samples collected seasonally between 2014 and 2019. Water properties were analyzed according to the connection of the lakes to the Baltic Sea using a total of 23 predictors. The lakes were classified as closed, intermittently connected, or open. Based on the physicochemical data, a relationship between the hydrological connection between the lakes and the sea was determined. The data collected could be used to monitor ongoing global climate change at the biosphere level.
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