Organic peroxy radicals, including alkyl peroxy radicals (RO2) and acyl peroxy radicals (RC(O)O2), are crucial intermediates in the atmospheric photochemical reactions of volatile organic compounds and directly or indirectly affect the distribution of other species (e.g., HO2 radicals, NOx, OH radicals, and alkenes). However, the atmospheric reactions of organic peroxyl radicals with alkenes (RO2 + alkene reactions) are not fully understood. The present study used theoretical calculations to investigate the reaction mechanisms of various organic peroxy radicals with different alkenes, with the aim of clarifying the influence of molecular structure on RO2 + alkene and RC(O)O2 + alkene reactions. Furthermore, we investigated the nucleation mechanisms of the subsequent oxidation products. The results show that the reaction rate constants for RC(O)O2 + alkene reactions are 1–6 orders of magnitude higher than those for RO2 + alkene reactions. The addition products formed by organic peroxy radicals with alkenes not only undergo monomolecular reactions to generate epoxides, but also participate in O2 addition to yield the accretion products ROOR’. H2SO4 molecules synergistically interact with low-volatility ROOR’ to grow clusters up to the 1–2 nm scale, and the ROOR’ molecules can form pure organic clusters larger than 1 nm, even in the absence of H2SO4 molecules. Our study provides a new perspective on the formation of accretion products in the atmosphere and their involvement in new particle formation.