Phosphocellulose Column Chromatography Research Articles

Occurrence of protein kinases NI and NII in human and porcine thyroids

Cyclic nucleotide-independent protein kinases that preferentially phosphorylated casein and phosvitin as substrate were detected in the nuclei of human and porcine thyroid tissues, and compared with those from rat liver. Enzymes were extracted from the isolated nuclei with a buffer solution containing 0.4 m NaCl, and analyzed by DEAE-Sephadex and phosphocellulose column chromatographies. The chromatographies, together with the characterization of the enzymes, demonstrated that human and porcine thyroid tissues contained two major casein kinases in the cell nuclei, the properties of which revealed that they are to be identified as protein kinases NI and NII.

ATP(GTP)-dependent conversion of MVM parvovirus single-stranded DNA to its replicative form by a purified 10 S species of mouse DNA polymerase α

A species of DNA polymerase α that is active in the ATP(GTP)-dependent conversion of MVM parvovirus single-stranded linear DNA to the duplex replicative form has been purified 4300-fold from Ehrlich ascites mouse tumour cells. The single-stranded → replicative form activity is maintained throughout ammonium sulfate precipitation, DEAE-cellulose, phosphocellulose and hydroxyapatite column chromatography and glycerol gradient sedimentation. Polypeptides with M r = 230 000, 220 000, 183 000, 157 000, 125 000, 70 000, 65 000, 62 000, 57 000, 53 000 and 48 000 copurify with the single-stranded → replicative form activity, which sediments at approx. 10 S. The M r = 183 000, 157 000 and 125 000 polypeptides exhibit catalytic activity when assayed in situ following SDS-polyacrylamide gel electrophoresis. The 10 S form of DNA polymerase α is functionally distinguishable from an 8.4 S form of the enzyme obtained from the same cells on the basis of single-stranded → replicative form activity. The single-stranded → replicative form activity of the 10 S enzyme is stable at 22°C for up to 3 h, but exhibits a half life of only 5 min at 45°C.

Purification and properties of a DNA ligase from sea urchin embryos.

DNA ligase was purified about 2,000-fold from blastulae of sea urchin, Hemicentrotus pulcherrimus, by means of 1 M KCl-extraction, phosphocellulose, DEAE-cellulose, Sepharose CL-6B, and double-stranded DNA cellulose column chromatography. The purified DNA ligase had a molecular weight of 80,000 (determined by Sephadex G-150) and a sedimentation coefficient of 4.1S (by glycerol gradient centrifugation). The purified enzyme required ATP and Mg2+ (or Mn2+) as cofactors for activity, and was inhibited by N-ethylmaleimide. Apparent Km values for ATP, Mg2+, and Mn2+ were 4 microM, 2.7 mM, and 0.3 mM, respectively.

コイ筋肉ホスホリラーゼｂキナーゼの精製とその触媒的性質

Procedures are described for purification of phosphorylase b kinase (EC. 2.7.1.38.) form carp muscle. The phosphorylase b kinases separated into two active fractions (Peak I and Peak II) on phospho-cellulose column chromatography by the linear gradient of KCl have similar properties with pH-depedency of activity, effect of Ca2+ on activity and Km values for ATP and phosphorylase b. Both kinases have a high ratio of activities at pH 6.8/pH 8.2 of 0.3-0.4 in comparison with a ratio of 0.05-0.08 for rabbit muscle enzyme.

Crystallization and properties of acylphosphatase from porcine skeletal muscle.

A crystalline acylphosphatase has been obtained from porcine skeletal muscle. The purification procedure consists of extraction with water, phosphocellulose column chromatography, CM-cellulose column chromatography, and crystallization. The enzyme was homogeneous by polyacrylamide gel electrophoresis. A high yield (39%) of the pure enzyme was attained by the use of buffers containing 10 mM 2-mercaptoethanol to prevent dimerization of the enzyme in the purification process. Activity assay in the presence of bovine serum albumin showed a high specific activity of the enzyme (about 7,000 mumol/min/mg at 25 degrees C with benzoyl phosphate as substrate). The molecular weight was determined to be 11,100 by sedimentation equilibrium. The amino acid composition of the enzyme was determined. The amino-terminus of the enzyme was blocked and the carboxyl-terminal residue was tyrosine.

FBJ virus-induced osteosarcoma contains type I, type I trimer, type III as well as type V collagens.

The FBJ osteosarcoma (a virus-induced osteosarcoma named after its discoverers, Finkel, Biskis, and Jinkins) contains an extensive extracellular matrix. Collagens were extracted by digestion with pepsin in dilute acetic acid from tumors grown in lathyritic mice and fractionated by differential salt precipitation, yielding five fractions. Fraction 1 (precipitated at acidic 0.7 M and neutral 2.0 M NaCl) gave rise mainly to alpha 1(III) chain on phosphocellulose column chromatography. The alpha 1(III) chain was identified by its typical behavior on interrupted electrophoresis and analysis of the CNBr-cleaved peptides. The alpha 1(III) chain of the FBJ tumor had a high content of hydroxylysine and neutral saccharide. Fraction 2 (precipitated at acidic 0.7 M and neutral 4.5 M NaCl) yielded alpha 1(I) and alpha 2(I) chains on the phosphocellulose column from which alpha 1(I) was eluted as a broad peak, conceivably reflecting a high content of hydroxylysine and neutral saccharide. Fraction 4 (precipitated at acidic 1.2 M and neutral 4.5 M NaCl) yielded type V collagen, which also featured an exceptionally high content of neutral saccharide (Yamagata, S., et al. (1982) Biochem. Biophys. Res. Commun. 105, 1208-1214). The proportions of type I, type I trimer, type III, and type V collagens extracted by pepsin digestion from FBJ tumor were calculated to be 33, 29, 26, and 12%, respectively. The FBJ tumor is free from invasion by blood vessels, shows no deposition of calcium, and thus has the appearance of cartilage. But type II collagen, a specific gene product of cartilage, could not be identified in any of the fractions analyzed. Contrary to its appearance, collagen type analyses indicate that FBJ osteosarcoma is literally induced from osteogenic cells.

Comparative study on vertebrate liver AMP deaminases

1. 1. Similar activity of AMP deaminase was found in rat, hen, turtle and flounder liver when estimated at high AMP concentration. The enzyme activity was of an order of magnitude higher in frog liver. 2. 2. Simple step by step phosphocellulose column chromatography revealed two forms of AMP deaminase in chicken and flounder liver and one form in the liver of rat and turtle. 3. 3. All enzymes (except for frog liver AMP deaminase) were activated by ATP. The enzymes from rat, frog and both forms from flounder were also activated by ADP. 4. 4. GTP exhibited a variety of effects. The enzyme from rat and turtle was inhibited, both forms from hen and flounder were activated and frog liver enzyme was not influenced.

A Porcine Brain Protein (35K Protein) which Bundles Microtubules and Its Identification as Glyceraldehyde 3-Phosphate Dehydrogenase1

A protein which binds to both tubulin and tubulin polymer was isolated from porcine brains. This protein has a molecular weight of 35,000 on SDS-polyacrylamide gel electrophoresis (designated as 35 K protein). The 35 K protein was purified through several steps of purification including ammonium sulfate fractionation, Sephadex G-100 gel filtration column chromatography, microtubule protein-agarose gel affinity column chromatography and phosphocellulose column chromatography. The 35 K protein caused pronounced enhancement of the turbidity increase produced by tubulin polymerization in the presence of DMSO, but did not have the ability to initiate polymerization of pure tubulin in the absence of DMSO. It was demonstrated that 35 K protein co-sediments with tubulin polymer in a concentration-dependent manner. Electron microscopic observation revealed the formation of bundles of tubulin polymer. Since the effect of 35 K protein was coupled with tubulin polymerization, 35 K protein did not cause the turbidity increase under conditions where tubulin polymerization was inhibited by Ca2+ or colchicine. The 35 K protein adsorbed on tubulin-Sepharose 4B was eluted by the addition of 2 mM ATP. ATP was shown to inhibit the interaction of 35 K protein with tubulin dimer or polymer. The 35 K protein was finally identified as glyceraldehyde 3-phosphate dehydrogenase from properties such as mobility on SDS-polyacrylamide gel electrophoresis, cleavage pattern on limited proteolysis, ability to bind to tubulin, and so on.

RNA polymerase of influenza virus. III. Isolation of RNA polymerase-RNA complexes from influenza virus PR8.

Ribonucleoprotein (RNP) cores with RNA-synthesizing activity were prepared in two fractions, M protein-free and M protein-associated, from detergent-treated influenza virus PR8 by centrifugation through a discontinuous triple gradient of cesium sulfate, glycerol, and NP-40. The M-free RNP was fractionated by phosphocellulose column chromatography into two major RNP forms, A and B, which differed in the content of P proteins, while the M-associated RNP gave only the low P-content Form-B RNP. Starting from the high P-content Form-A RNP, an RNA-P proteins complex virtually free from NP protein was isolated by cesium sulfate equilibrium centrifugation. The complex, containing only three P proteins (P1, P2, and P3), was still active in catalyzing RNA synthesis in vitro without addition of exogenous template, indicating that NP protein is not required for the catalysis of RNA synthesis. RNA synthesis by the isolated RNA-P proteins complex was dependent on either ApG or capped RNA primers, and required four ribonucleoside triphosphates as substrates. The RNA product in this reaction was hybridizable to viral RNA. A complex of one each of the three P proteins was separated from RNA by glycerol gradient centrifugation after ribonuclease treatment or cesium chloride equilibrium centrifugation.

AMP deaminase isozymes in rabbit red and white muscles and heart

1. 1. To characterize AMP deaminase activity in rabbit red and white muscles and heart, phosphocellulose column chromatography was carried out. 2. 2. White muscle and heart showed a single activity peak, but their elution positions were different. 3. 3. Red muscle showed two peaks of enzyme activity (Red-I and Red-II). 4. 4. Chromatographic, electrophoretic, immunological and kinetic studies showed that Red-I is identical to the isozyme in heart and Red-II identical to the isozyme in white muscle.

Characterization of human cytomegalovirus-induced DNA polymerase and the associated 3′-to−5′, exonuclease

A DNA polymerase activity induced by human cytomegalovirus (HCMV) was separated from host cell DNA polymerase and purified by phosphocellulose and DNA-cellulose column chromatography. The DNA polymerase activity was strongly inhibited by phosphonoacetic acid, aphidicolin, araATP, and N-ethylmaleimide, but it was resistant to 2′,3′dideoxyTTP. The sensitivity of HCMV-induced DNA polymerase to these reagents resembles that of host cell DNA polymerase α. However, HCMV-induced DNA polymerase activity was stimulated several fold by 100 m M ammonium sulfate, by which DNA polymerase α activity was strongly inhibited. Furthermore, it was found that a 3′-to−5′ exonuclease activity was tightly associated with the HCMV-induced DNA polymerase. The exonuclease was also stimulated by ammonium sulfate, was inhibited by phosphoacetic acid, and it preferred single-stranded DNA as a substrate. The results suggest that the 3′-to−5′ exonuclease may play a role in proofreading in the polymerization process as an integral part of the HCMV-induced DNA polymerase.

Stimulation of tubulin-dependent ATPase activity in microtubule proteins from porcine brain by vinblas tine.

Vinblastine, a plant alkaloid which inhibits tubulin polymerization, stimulated an ATPase activity in microtubules. When microtubule proteins were separated into microtubule-associated proteins (MAPs) and tubulin by phosphocellulose column chromatography, vinblastine did not stimulate an ATPase activity recovered in the MAPs fraction unless tubulin was present. Therefore, vinblastine is considered to act through its binding to the tubulin molecule on MAPs ATPase. Divalent cations that activate tubulin-dependent MAPs ATPase activity were also required for the stimulation by vinblastine. In the presence of Ca2+ and vinblastine the ATPase activity was most active and the extent of stimulation reached about 200% of the original level in the absence of vinblastine. Half-maximal stimulation was attained when the molar ratio of vinblastine to tubulin was 0.5. The concentration of tubulin for half-maximal stimulation was increased in the presence of vinblastine, while divalent cation requirements were decreased. Several factors such as KCl (100 mM), alkaline pH (pH 7.5), and low temperature (10 degrees C) were not responsible for the disappearance of the stimulation. Vincristine stimulated tubulin-dependent MAPs ATPases activity as vinblastine did, whereas the activity was scarcely affected by colchicine, podophyllotoxin, strychnine, and chlorpromazine. Actin had no effect on MAPs ATPase activity in the absence and presence of vinblastine when it was used in place of tubulin.

Studies on the metabolism of unsaturated fatty acids. X. Purification and some properties of 2,4-dienoyl-CoA reductase from Escherichia coli.

2,4-Dienoyl-CoA reductase has been separated from Escherichia coli grown in the presence of linoleic acid and purified to homogeneity. The enzyme has a molecular weight close to 50,000 as determined by gel filtration on Sephacryl S-200 Super-fine. The reductase was rather stable in a buffer containing citric acid and kept its full activity on heating at 55 degrees C for 10 min in the pH range of 5.5 to 6.5, but was completely inactivated on heating at 58 degrees C for 10 min. Phosphocellulose column chromatography revealed that the reductase was not involved in the multi-enzyme complex (molecular weight of 260,000) of fatty acid oxidation.

DNA polymerases of Tetrahymena pyriformis. I. Characterization of two N-ethylmaleimide-sensitive DNA polymerases from exponentially growing cells.

Two DNA polymerase activities, polymerases A and B, were separated from the Triton-treated cell homogenate of exponentially growing Tetrahymena pyriformis by phosphocellulose column chromatography. Their properties were as follows. Polymerase A: The molecular weight was about 140,000, the sedimentation value was about 6.2S, the optimum Mg2+ concentration was 15 mM, the optimum K+ (or Na+) concentration was 20 mM, and the optimum pH was 7.4. The enzyme activity was inhibited by cytosine-beta-D-arabinofuranoside-5'-triphosphate (araCTP) or aphidicolin, but not by 2'-3'-dideoxythymidine-5'-triphosphate (ddTTP). Polymerase B: The molecular weight was about 70,000, the sedimentation value was 4.3S, the optimum Mg2+ concentration was 15 mM, the optimum K+ (or Na+) concentration was 150 mM, and the optimum pH was 8.4. The enzyme activity was inhibited by ddTTP, but not by araCTP or aphidicolin. Polymerases A and B were both found to be N-ethylmaleimide-sensitive. These results indicate that at least two N-ethylmaleimide-sensitive DNA polymerases, A and B, are present in exponentially growing Tetrahymena cells. Polymerase A bears many similarities to DNA polymerase alpha of higher eukaryotes and polymerase B also bears similarities to DNA polymerase beta except as regards N-ethylmaleimide sensitivity. Based on the properties of polymerases A and B, the relation of Tetrahymena DNA polymerases reported by several investigators is discussed.

49] 6-Phosphogluconate dehydrogenase from Bacillus stearothermophilus

Publisher Summary The enzyme 6-phosphogluconate dehydrogenase plays a key role in the pentose phosphate cycle because it catalyzes the reversible oxidative decarboxylation of 6-phospho-D-gluconate to yield D-ribulose 5-phosphate and CO 2 , with nicotinamide adenine dinucleotide phosphate (NADP) reduced to nicotinamide adenine dinucleotide phosphate dehydrogenase (NADPH). This chapter describes a purification procedure for 6-PGDH from the thermophilic microorganism, B. stearotherrnophilus , which shows an optimum growth temperature near 60°C. The method of the determination of enzymic activity is based on the spectrophotometric measurement of NADPH formed during the oxidative decarboxylation of the substrate. The reaction is initiated by the addition of the enzyme and followed by the rate of NADPH formation at 340 nm using a thermostatted spectrophotometer. The steps involved in the purification procedure are: (1) ammonium sulfate fractionation, (2) diethylaminoethyl (DEAE)-cellulose column chromatography, (3) hydroxyapatite column chromatography, (4) phosphocellulose column chromatography, and (5) gel filtration with BioGel A-0.5m. The purified enzyme is foundto be homogeneous on alkaline polyacrylamide gels at pH 8.5.

Purification and properties of magnesium- and manganese-dependent ribonucleases H from chick embryo.

Two RNases H, Mg2+- and Mn2+-dependent RNases H, are present in extracts of chick embryo. These RNases H can be separated by phosphocellulose column chromatography. Mg2+-dependent RNase H was purified over 900-fold and Mn2+-dependent RNase H over 1,700-fold from chick embryo extracts. The molecular weight of the purified Mg2+-dependent RNase H was about 40,000 and of the Mn2+-dependent RNase H about 120,000, when estimated by gel filtration. Mg2+-dependent RNase H exhibits maximal activity at pH 9.5, and requires 15 to 20 mM Mg2+ for maximal activity, whereas Mn2+-dependent RNase H is most active at pH 8.5, and is maximally active at the concentration of 0.4 mM Mn2+, and has some activity with Mg2+. Both enzymes require a sulfhydryl reagent for maximal activity. Mn2+-dependent RNase H was inhibited by o-phenanthroline, pyrophosphate, and those polyamines tested, whereas Mg2+-dependent enzyme was not, although it was inhibited by NaF. Both RNases H liberate a mixture of oligonucleotides with 5'-phosphate and 3'-hydroxyl termini endonucleolytically.

Isolation of the catalytic core of DNA polymerase alpha from rabbit bone marrow.

Modification of the purification procedures for rabbit bone marrow DNA polymerase [Byrnes, J.J., & Black, V.L. (1978) Biochemistry 17, 4226-4231] has increased the yield and stability of the enzyme thus allowing further purification. In particular, the higher molecular weight form, alpha 1, has been more abundant. Additional purification has been obtained upon phosphocellulose and chromatofocusing column chromatography. SDS slab gel electrophoretic analyses of the eluates demonstrate a 135,000 molecular weight polypeptide in nearly pure form which correlates with DNA polymerase activity. Approximately 200,000 nmol of thymidine monophosphate is incorporated into DNA (mg of protein) -1h -1 at 37 degrees C. Similar to DNA polymerase alpha from other sources this enzyme is an acidic protein, is very sensitive to aphidicolin, and has no detectable 3' to 5' nuculease activity.

Transcription factors from oviduct and HeLa cells are similar.

Total HeLa cell extract was separated into multiple components using first DEAE-Sephadex and then phosphocellulose column chromatography. Four major fractions, DE175, DE500, P100, and P1000, from HeLa cells are found to be essential for accurate and efficient transcription of cloned ovalbumin DNA fragments in the reconstituted system. DE175 serves as the source for RNA polymerase II and DE500 minimizes the synthesis of small molecular size RNA. P100 enhances the levels of specific transcription, while P1000 is absolutely required for correct initiation. Chick oviduct crude extract was also fractionated into multiple components according to the same procedure. Similar efficiency of specific initiation could be obtained when an individual fraction (DE175, DE500, P100, or P1000) from oviduct cells was exchanged for a fraction from HeLa cells. These results indicate that chick oviduct tissue also contains general transcription factors like that of HeLa cells and these factors can be fractionated according to the same procedure. In this fractionation scheme, we were able to separate the bulk of RNase activity into the P350 fraction which was not required for initiation of ovalbumin RNA transcription. Thus, this reconstituted system is suitable for studying in vitro transcription in a homologous system derived from tissue extracts, even though a substantial amount of cellular ribonuclease may be associated with it.

Purification of chick oviduct progesterone receptor apoprotein

The 8S progesterone receptor from chick oviduct has been partially purified (500-fold) as the apoprotein lacking hormone. The procedure employs polyethylene glycol precipitation, phosphocellulose, DNA cellulose, DEAE cellulose, hydroxylapatite and ethyl agarose column chromatography. As shown for the native cytosolic receptor, the purified apoprotein can be dissociated into A and B subunits. Qualitative and quantitative analysis of subunit structure shows no difference between purified and cytosolic native progesterone receptor. The A subunit dissociated from the purified receptor maintains its DNA binding activity as shown by the “Western” protein blotting technique and sedimentation velocity analysis. Moreover, purified progesterone receptor has steroid binding specificity very close to the native material. The purified progesterone receptor is free of DNase and RNase contaminating activities and represents a useful tool for in vitro studies of hormone action.

Partial purification of RNase P from Schizosaccharomyces pombe.

Ribonuclease P from the fission yeast Schizosaccharomyces pombe was partially purified using DEAE-cellulose and phosphocellulose column chromatography. The yeast RNase P enzyme cleaves Escherichia coli tRNATyr precursor to give tRNATyr containing its mature 5' end. The enzyme activity is inhibited after treatment with nucleases; this indicates the requirement of a nucleic acid component for activity. The enzyme purification was greatly facilitated by using a synthetically prepared radioactive ApApApCOH ligated to the 5'-terminal phosphate of E. coli tRNAfMet (ApApApCp-tRNA) substrate. (p denotes a [32P]phosphate group.) This substrate was cleaved by yeast RNase P to the mature tRNA and a tetranucleoside triphosphate ApApApCOH. The synthetic substrate allowed the utilization of a simple assay procedure measuring the trichloroacetic acid solubility of the ApApApC product, thus avoiding the more cumbersome gel electrophoric separation of reaction products.