Abstract. Results of monitoring accumulated snow cover in upstream areas of the Transboundary Pyanj River (Central Asia) are presented. It is found that the formation of the snow cover and the spatial distribution of atmospheric precipitation in the Mountain Pamir is determined by the orography of the terrain. Orography influences air mass movement in mountain areas, which contributes in different climatic zones to a shift in periods when the maximum amount of snow is falling. Completely different scenarios for the development of meteorological variables in the western and eastern parts of the Gunt River Basin were found, due, firstly, to the influence of the mountainous area orography and, secondly, to the penetration of various air masses. It is observed that in the western part of the basin the average annual precipitation remained almost unchanged over the period 1944–2014, whereas there is a decreasing trend in the eastern part. Assessment of the climate change impact on the formation of the Gunt River water flow was made by comparing the trend in the change of discharge using data from two observation periods 1940–1970 and 1986–2016. Calculations show a decrease of the Gunt River discharge by 5 % over a period of more than 70 years. The influence of climate warming on the river flow is indicated by comparison of river hydrograph in two periods 1940–1970 and 1986–2016. The hydrograph of the Vanch River in the earlier-mentioned periods shows a shift in the maximum of the monthly discharge towards the left, indicating an earlier melting of snow and glaciers in the upstream regions of the river and a significant increase in discharge in the period 1986–2016.