Biofouling of air cathode surface decreases the electricity generation performance of membrane‐free microbial fuel cells (MFCs). Ag@Co/Zn N‐doped carbon (Ag@Co/Zn‐NC) is designed as an antibacterial oxygen reduction reaction (ORR) catalyst to inhibit biofouling on the cathode surface. The Co/Zn‐NC active component promotes ORR catalytic activity through the advantages of well‐distributed Co nanoparticles and numerous active sites. Superficial Ag nanoparticles act as antibacterial active species to inhibit bacterial proliferation and suppress biofilm growth. Ag@Co/Zn‐NC catalyst prevents bacterial adhesion and biofilm formation, effectively preventing excessive biofouling on the cathode surface. The antibacterial catalyst maintains a high catalytic activity and good ion diffusion properties without the adverse effects of biofouling, resulting in enhanced ORR durability of the air cathode. The assembled MFCs achieve high electricity generation during long‐term cyclic operation. The maximum power density retention percentage (82.6%) is higher than that of Co/Zn‐NC MFC (65.3%) and Pt/C MFC (52.4%) after continuous operation for 1200 h. Excellent operational durability is revealed for the air‐cathode MFCs assembled with the antibacterial ORR catalyst during the cyclic process. The novelty of this study is that the design of antibacterial catalysts inhibits the excessive growth of the cathode biofilm to improve the cyclic electricity generation performance of MFCs.