Free-living soil nematodes span several trophic levels and play a key role in soil food webs. As such, the relative abundances and diversity of nematode feeding groups, along with nematode body size that is correlated with trophic transfer efficiency may provide useful information in understanding carbon and nitrogen cycling in soil systems. Yet, despite their role in soil carbon dynamics, there is a lack of knowledge regarding nematode trophic diversity in high carbon storage systems such as boreal peatlands. Here we assessed nematode communities using feeding groups (bacterivores, fungivores, herbivores, omnivores, and predators) based on mouthpart morphology, and their body sizes (length and mass) in two contrasting boreal peatlands in Northern Ontario, Canada that differ in vegetation (Sphagnum vs Carex), hydrology, nutrient availability, and microbial decomposition. We found that nematode trophic diversity was higher in the Sphagnum-dominated fen, and that the dominant nematode group corresponded to the dominant microbial group at each site. Predatory nematodes were significantly more abundant and larger in the Sphagnum-dominated fen, consistent with greater food web complexity, but the average body size of nematodes (all feeding groups included) was not significantly different between the fens. Taken together, these observed trends in nematode feeding groups and body sizes, along with higher microbial biomass in the Sphagnum-dominated fen supports the idea that the two sites may differ ecologically, and generally follow differences in microbial communities. Our study provides important baseline information for understanding peatland soil food web dynamics and their implications for carbon and nutrient dynamics.