Patterns Of Relatedness Research Articles

Genetic analysis reveals diverse kin‐directed routes to helping in the rifleman Acanthisitta chloris

The social organization of cooperatively breeding species is extremely variable, with diverse social group composition and patterns of relatedness. Species that exhibit alternative routes to helping within the same population are potentially useful systems to investigate the causes and fitness consequences of diverse evolutionary pathways to cooperative behaviour. In this study, we use microsatellite markers and field observations to describe helping behaviour and patterns of relatedness in the unusual cooperative breeding system of the rifleman Acanthisitta chloris. First, we show that rifleman helpers consist of a remarkably diverse demographic, including males and females, who may be adult or juvenile, failed breeders or nonbreeders, or even successful breeders that simultaneously feed their own brood. Adult helpers mostly helped at first-brood nests, while first-brood juveniles assisted their parents at second broods. Second, we show that rifleman pairs are strictly sexually monogamous, and helpers did not gain any current reproductive success through helping. Third, genotyping showed that contrary to previous assumptions, helpers were closely related to the recipients of their care and preferentially directed care towards relatives over contemporaneous nests of nonrelatives. Finally, we show that variation in helper provisioning effort was attributed to age: juvenile helpers provisioned less than adults and were less responsive to the demands of a growing brood. Overall, our results show that the diverse routes to helping in this unusual species are driven by the common theme of kinship between helper and recipients, resulting in a previously underestimated potential for helpers to gain indirect fitness benefits.

The Impact of male reproductive skew on kin structure and sociality in multi‐male groups

Patterns of within-group relatedness are expected to affect the prospects for cooperation among group members through kin selection. It has long been established that dispersal patterns determine the availability of kin and there is ample evidence of matrilineal kin biases in social behavior across primate species. However, in 1979, Jeanne Altmann(1) suggested that mating patterns also influence the structure of within-group relatedness; high male reproductive skew and the frequent replacement of breeding males leads to relatively high levels of paternal relatedness and age-structured paternal sibships within groups. As a consequence of frequent replacement of breeding males, relatedness among offspring of a given female will be reduced to the half- rather than full-sibling level. Depending on the number of sires and degree of relatedness among mothers, members of the same birth cohort may be as closely related as maternal siblings. If animals are able to recognize their paternal kin and exhibit biases in favor of them, this may influence the distribution of cooperation and the intensity of competition within groups of primates. Here, I summarize the evidence that serves as the basis for Altmann's predictions and review evidence regarding whether or not the availability of paternal kin also leads to paternal kin bias among primates.

Parentage analysis of Ansell's mole-rat family groups indicates a high reproductive skew despite relatively relaxed ecological constraints on dispersal

To better understand evolutionary pathways leading to eusociality, interspecific comparisons are needed, which would use a common axis, such as that of reproductive skew, to array species. African mole-rats (Bathyergidae, Rodentia) provide an outstanding model of social evolution because of a wide range of social organizations within a single family; however, their reproductive skew is difficult to estimate, due to their cryptic lifestyle. A maximum skew could theoretically be reached in groups where reproduction is monopolized by a stable breeding pair, but the value could be decreased by breeding-male and breeding-female turnover, shared reproduction and extra-group mating. The frequency of such events should be higher in species or populations inhabiting mesic environments with relaxed ecological constraints on dispersal. To test this prediction, we studied patterns of parentage and relatedness within 16 groups of Ansell's mole-rat (Fukomys anselli) in mesic miombo woodland. Contrary to expectation, there was no shared reproduction (more than one breeder of a particular sex) within the studied groups, and proportion of immigrants and offspring not assigned to current breeding males was low. The within-group parentage and relatedness patterns observed resemble arid populations of 'eusocial' Fukomys damarensis, rather than a mesic population of 'social' Cryptomys hottentotus. As a possible explanation, we propose that the extent ecological conditions affect reproductive skew may be markedly affected by life history and natural history traits of the particular species and genera.

Use of a Genealogical Database Demonstrates Heritability of Pulmonary Fibrosis

Pulmonary fibrosis (PF) is a progressive fatal disease of unknown etiology. Identification of risk genes and pathways will enhance our understanding of this disease. Analysis of Utah genealogical resources has shown previously strong evidence for a genetic contribution to other disease, such as cancer. This approach has led to gene discovery in diseases, such as breast cancer and colon cancer and is used here for PF to quantify the heritability. We hypothesize that there is a heritable contribution to death from PF and use existing genealogic and death certificate data to examine patterns of relatedness amongst individuals who have died of PF. We analyzed familial clustering of individuals who died from PF using the Utah Population Database, a unique population-based genealogical resource that has been linked to death certificates dating from 1904. We identified 1,000 individuals with at least three generations of genealogy data and a cause of death documented as PF (cases). We estimated the relative risk (RR) of death from PF among the first-, second-, and third-degree relatives of cases. We also tested the hypothesis of excess relatedness among the cases by comparing the average pairwise relatedness of all cases to the average pair-wise relatedness of 1,000 sets of matched controls. We observed significantly increased risk for death from PF among the first- (RR=4.69), second- (RR=1.92), and third-degree relatives (RR=1.14) of cases. The average relatedness of the 1,000 cases was significantly higher than the expected average relatedness of matched control sets (p<0.001). When close (first- and second-degree) relationships were ignored, significantly increased relatedness remained (p=0.002). Our results demonstrate significant clustering among both close and distant relatives, providing strong support for genetic contributions to death from PF. High-risk pedigrees derived from this unique resource may help identify new risk genes and gene pathways.

Age, but not Sex or Genetic Relatedness, Shapes Raccoon Dominance Patterns

AbstractRaccoons are generally regarded as solitary, yet several studies have found that raccoons frequently form social affiliations. One benefit to sociality in many mammal species is that relatives and close associates can form coalitions against third parties during agonistic encounters. We tested whether raccoon dominance patterns were influenced by age, sex, genetic relatedness, and association patterns at two anthropogenic feeding stations in an urban forest. We found that genetic relatedness had no significant effect on patterns of agonism at one of the feeding stations. At the second feeding station, raccoons were more likely to act aggressively toward close relatives, which is opposite of the predicted pattern. However, when we controlled for the number of times raccoons arrived at feeding stations in close proximity, the effect of relatedness on dominance patterns was not significant at either feeding station. These results suggest that relatedness plays little or no role in shaping dominance patterns of raccoons. Older raccoons were ranked significantly higher in the dominance hierarchies regardless of sex. This pattern leads us to conclude that age is the primary factor driving the outcome of aggressive interactions in raccoons at our study site. Despite frequent social interactions at the study site, the patterns of raccoon dominance more closely resemble patterns found in solitary animals. To confirm the generality of these results and to better understand the evolution of raccoon social behavior, similar studies need to be undertaken in other raccoon populations.

Occurrence of Listeria spp. in Retail Meat and Dairy Products in the Area of Addis Ababa, Ethiopia

Listeriosis, a bacterial disease in humans and animals, is mostly caused by ingestion of Listeria monocytogenes via contaminated food and/or water, or by a zoonotic infection. Globally, listeriosis has in general a low incidence but a high case fatality rate. The objective of this study was to investigate the occurrence, antimicrobial profiles, and genetic relatedness of L. monocytogenes from raw meat and dairy products (raw milk, cottage cheese, cream cake), collected from the capital and five neighboring towns in Ethiopia. Two hundred forty food samples were purchased from July to December 2006 from food vendors, shops, and supermarkets, using a cross-sectional study design. L. monocytogenes were isolated and subjected to molecular serotyping. The genetic relatedness and antimicrobial susceptibility patterns were investigated using pulsed-field gel electrophoresis (PFGE) and minimum inhibitory concentration determinations. Of 240 food samples tested, 66 (27.5%) were positive for Listeria species. Of 59 viable isolates, 10 (4.1%) were L. monocytogenes. Nine were serotype 4b and one was 2b. Minimum inhibitory concentration determination and PFGE of the 10 L. monocytogenes isolates showed low occurrence of antimicrobial resistance among eight different PFGE types. The findings in this study correspond to similar research undertaken in Ethiopia by detecting L. monocytogenes with similar prevalence rates. Public education is crucial as regards the nature of this organism and relevant prevention measures. Moreover, further research in clinical samples should be carried out to estimate the prevalence and carrier rate in humans, and future investigations on foodborne outbreaks must include L. monocytogenes.

Phylogeography of the horse musselModiolus modiolus

Phylogeographic inferences concerning marine species are largely based on intertidal species. In high latitudes, intertidal species have been affected by ice coverage and ice scour, and therefore show northern range limitations during glaciations. In this study, we use the subtidal horse mussel (Modiolus modiolus) to investigate whether generalizations about genetic structure of high latititude intertidal species, specifically in the North Atlantic, are representative of other near shore taxa. We analysed genetic diversity, molecular variance, and geographical patterns of genetic relatedness using data from the mtDNA CO1 gene. Although we do find little to no haplotype structure in the North Atlantic, our results show that north-eastern Pacific individuals represent a different haplotype network with no haplotypes in common with Atlantic individuals. Thus,M. modiolusin the Pacific may represent an unrecognized species. Genetic diversity and population expansion times suggest a Pacific origin is most likely, with subsequent dispersal to the Atlantic. The lack of genetic structure in the Atlantic suggests that a rapid range expansion occurred less than 50 KYA, rather than a stepping stone mode of dispersal.

Temporal genetic structure and relatedness in the Tufted DuckAythya fuligulasuggests limited kin association in winter

Conspecific aggregation of waterfowl in winter is a common example of animal flocking behaviour, yet patterns of relatedness and temporal substructure in such social groups remain poorly understood even in common species. A previous study based on mark-recapture data showed that Tufted Ducks Aythya fuligula caught on the same day were re-caught together in subsequent winters more often than expected by chance, suggesting stable assortments of ‘socially familiar’ individuals between wintering periods. The genetic relationships within these social groups were not clear. Based on 191 individuals genotyped at 10 microsatellite markers, we investigated the temporal genetic structure and patterns of relatedness among wintering Tufted Ducks at Lake Sempach, Switzerland, in two consecutive winters. We found no evidence of genetic differentiation between temporal groups within or between winters. The average levels of relatedness in temporal groups were low and not higher than expected in random assortments of individuals. However, Mantel tests performed for each sex separately revealed significant negative correlations between the pairwise relatedness coefficients and the number of days between the capture dates of pairs of wintering Tufted Duck in males and females. This pattern suggests the presence of a small number of co-migrating same-sex sibling pairs in wintering flocks of Tufted Ducks. Our findings provide one of the first genetic analyses of a common duck species outside the breeding season and contribute to the understanding of social interactions in long-distance migratory birds.

Staphylococcus aureus shedding pattern throughout lactation in dairy cows with naturally occurring intramammary infection

To evaluate shedding patterns of Staphylococcus aureus, specifically the association between clonal relatedness and shedding patterns of S aureus for cows with naturally occurring S aureus intramammary infection. Longitudinal field study. Milk samples from 22 lactating cows (29 mammary glands) of varied numbers of lactations on 2 dairies. Procedures-Foremilk samples were collected weekly for 26 to 44 weeks during lactation from individual mammary glands. Milk samples were cultured bacteriologically with a 0.01-mL inoculum. Samples were considered culture positive for S aureus if ≥ 1 colony-forming units were obtained. Milk samples from known S aureus-positive mammary glands that were culture negative for S aureus or culture positive with a single colony of S aureus were cultured bacteriologically a second time with a 0.1-mL inoculum. Longitudinal shedding patterns of S aureus and the effect of strain type on ln(colony forming unit count) were examined. With the 0.01-mL inoculum, 914 of 1,070 (85%) samples were culture positive. After reculturing of negative samples with a 0.1-mL inoculum, 1,011 (95%) of the samples were culture positive. There was no significant difference in the detection of S aureus between genotypic clusters when either the 0.01- or 0.1-mL inoculum was used. There was no significant difference in the amount of shedding between mammary glands infected with isolates in genotypic cluster 1 or 2. No consistent shedding patterns were identified among or within cows. There was a significant difference in mammary gland linear score and test day (composite) linear score between mammary glands infected with isolates in genotypic clusters 1 and 2. S aureus was shed consistently in cows with naturally occurring intramammary infection in cows, and regardless of the pulsotype, variations in the amount of S aureus shedding had no significant effect on the ability to detect S aureus with a 0.1-mL inoculum.

Plant Ontogeny, Spatial Distance, and Soil Type Influence Patterns of Relatedness in a Common Amazonian Tree

The formation of spatial genetic structure (SGS) may originate from different patterns of seed deposition in the landscape, and is mostly determined by seed dispersal limitation. After dispersal, mechanisms such as filtering by environmental factors or attack by herbivores/pathogens throughout plant development stages, and potentially either disrupt or intensify SGS patterns. We investigated how the genotype of Protium subserratum (Burseraceae), a common tree species in the Ducke Reserve, Brazil, is distributed across the landscape. We used seven microsatellite markers to assess the SGS among plants at different life stages and in different environments. By quantifying the patterns of relatedness among plants of different sizes, we inferred the ontogenetic stage in which SGS changes occurred, and compared these effects across soil types. Relatedness among seedlings decreased when distance between seedlings increased, especially for the youngest seedlings. However, this trend was not continued by older plants, as relatedness values were higher among neighboring individuals of the juvenile and adult size class. Contrasting relatedness patterns between seedlings and larger individuals suggests a trade-off between the negative effects of being near closely-related adults (e.g. due to herbivore and pathogen attack) and the advantage of being in a site favorable to establishment. We also found that soil texture strongly influenced density-dependence patterns, as young seedlings in clay soils were more related to each other than were seedlings in bottomland sandy soils, suggesting that the mechanisms that create and maintain patterns of SGS within a population may interact with environmental heterogeneity.

Environmental filtering determines community patterns in temporary wetlands: a multi-taxon approach

Climate characteristics appear to play a key role in filtering organisms based on their biological traits. If this trait filtering by climate indeed occurs, it should have effects on the composition, dynamics, taxonomic relatedness and co-occurrence patterns of local assemblages, regardless of the taxonomic group considered. This preliminary study aimed to assess the extent to which environmental variables might determine these patterns in local communities and to evaluate whether the ultimate cross-taxon congruence relationships are consistent across, or dependent on, the selected region. To this end, we studied the bryophyte, macrophyte, macroinvertebrate, and amphibian communities in two clusters of temporary wetlands on the NE Iberian Peninsula under mesothermal and semiarid climates. We observed effects of environmental filtering, with the communities differing between the climatic regions not only in their compositions but also in their dynamics and taxonomic relatedness patterns. Although the cross-taxon congruence in terms of species richness was high in the mesothermal climate, most of the congruent relationships were disrupted in the semiarid environment. Overall, because climate-dependent patterns appear to prevail over climate-consistent ones, we suggest that the use of surrogate taxa may be of limited value when aiming to assess wetland biodiversity across large areas.

Filtering across Spatial Scales: Phylogeny, Biogeography and Community Structure in Bumble Bees

Despite the expansion of phylogenetic community analysis to understand community assembly, few studies have used these methods on mobile organisms and it has been suggested the local scales that are typically considered may be too small to represent the community as perceived by organisms with high mobility. Mobility is believed to allow species to mediate competitive interactions quickly and thus highly mobile species may appear randomly assembled in local communities. At larger scales, however, biogeographical processes could cause communities to be either phylogenetically clustered or even. Using phylogenetic community analysis we examined patterns of relatedness and trait similarity in communities of bumble bees (Bombus) across spatial scales comparing: local communities to regional pools, regional communities to continental pools and the continental community to a global species pool. Species composition and data on tongue lengths, a key foraging trait, were used to test patterns of relatedness and trait similarity across scales. Although expected to exhibit limiting similarity, local communities were clustered both phenotypically and phylogenetically. Larger spatial scales were also found to have more phylogenetic clustering but less trait clustering. While patterns of relatedness in mobile species have previously been suggested to exhibit less structure in local communities and to be less clustered than immobile species, we suggest that mobility may actually allow communities to have more similar species that can simply limit direct competition through mobility.

Urban land use limits regional bumble bee gene flow

Potential declines in native pollinator communities and increased reliance on pollinator-dependent crops have raised concerns about native pollinator conservation and dispersal across human-altered landscapes. Bumble bees are one of the most effective native pollinators and are often the first to be extirpated in human-altered habitats, yet little is known about how bumble bees move across fine spatial scales and what landscapes promote or limit their gene flow. In this study, we examine regional genetic differentiation and fine-scale relatedness patterns of the yellow-faced bumble bee, Bombus vosnesenskii, to investigate how current and historic habitat composition impact gene flow. We conducted our study across a landscape mosaic of natural, agricultural and urban/suburban habitats, and we show that B. vosnesenskii exhibits low but significant levels of differentiation across the study system (F(ST) = 0.019, D(est) = 0.049). Most importantly, we reveal significant relationships between pairwise F(ST) and resistance models created from contemporary land use maps. Specifically, B. vosnesenskii gene flow is most limited by commercial, industrial and transportation-related impervious cover. Finally, our fine-scale analysis reveals significant but declining relatedness between individuals at the 1-9 km spatial scale, most likely due to local queen dispersal. Overall, our results indicate that B. vosnesenskii exhibits considerable local dispersal and that regional gene flow is significantly limited by impervious cover associated with urbanization.

Population structure, multiple paternity, and long-distance transport of spermatozoa in the freshwater musselLampsilis cardium(Bivalvia:Unionidae)

AbstractFreshwater mussels (Bivalvia:Unionidae) are among the most imperiled organisms in North America. Information on the spatial scale of reproduction and population connectivity will better enable mussel conservation programs to sustain long-term population viability, particularly restocking and recovery programs. Here we used genetic methods to characterize population structure, dispersal potential, and reproductive strategies in the freshwater mussel Lampsilis cardium from Twin Creek and Big Darby Creek (Ohio, USA). We genotyped adults and individual glochidia at 12 microsatellite loci to assess local population structure relative to within-population patterns of relatedness and parentage. Local populations within watersheds were weakly structured, and within-population estimates of relatedness identified probable full- and half-siblings several kilometers apart. Parent–offspring comparisons provided evidence of multiple paternity in single broods and identified the likely father of 3 glochidia from...

Phylogenetic structure of vertebrate communities across the Australian arid zone

AbstractAimTo understand the relative importance of ecological and historical factors in structuring terrestrial vertebrate assemblages across the Australian arid zone, and to contrast patterns of community phylogenetic structure at a continental scale.LocationAustralia.MethodsWe present evidence from six lineages of terrestrial vertebrates (five lizard clades and one clade of marsupial mice) that have diversified in arid and semi‐arid Australia across 37 biogeographical regions. Measures of within‐lineage community phylogenetic structure and species turnover were computed to examine how patterns differ across the continent and between taxonomic groups. These results were examined in relation to climatic and historical factors, which are thought to play a role in community phylogenetic structure. Analyses using a novel sliding‐window approach confirm the generality of processes structuring the assemblages of the Australian arid zone at different spatial scales.ResultsPhylogenetic structure differed greatly across taxonomic groups. Although these lineages have radiated within the same biome – the Australian arid zone – they exhibit markedly different community structure at the regional and local levels. Neither current climatic factors nor historical habitat stability resulted in a uniform response across communities. Rather, historical and biogeographical aspects of community composition (i.e. local lineage persistence and diversification histories) appeared to be more important in explaining the variation in phylogenetic structure. While arid‐zone assemblages show an overall tendency towards phylogenetic clustering, this pattern was less pronounced at finer spatial scales.Main conclusionsBy focusing within different taxonomic groups and between those groups within regions, we show that although the vertebrate lineages we examined exhibited high diversity and low turnover across the arid zone, the underlying phylogenetic structure differs between regions and taxonomic groups, suggesting that taxon‐specific histories are more important than habitat stability in determining patterns of phylogenetic community relatedness.

Worker drift and egg dumping by queens in wild Bombus terrestris colonies

Wild bumblebee colonies are hard to find and often inaccessible, so there have been few studies of the genetic structure of bumblebees within natural colonies, and hence, it is not clear how frequently events such as worker reproduction, worker drift and queen usurpation take place. This study aimed to quantify the occurrence of natal-worker reproduction, worker drift and drifter reproduction within 14 wild colonies of Bombus terrestris in Central Scotland. Four unlinked microsatellites were used to identify patterns of relatedness of the colonies’ adults and broods. In colonies with queens (queenright colonies), worker reproduction accounted for just 0.83 % of males, increasing to 12.11 % in queenless colonies. Four colonies contained a total of six workers which were not daughters of the queen, and were assumed to be drifters, and four male offspring of drifters. Drifting is clearly not common and results in few drifter offspring overall, although drifters produced approximately seven times more offspring per capita than workers that remained in their natal colony. Unexpectedly, two colonies contained clusters of sister workers and juvenile offspring that were not sisters to the rest of the adults or brood found in the colonies, demonstrating probable egg dumping by queens. A third colony contained a queen which was not a sister or daughter to the other bees in the colony. Although usurping of bumblebee colonies by queens in early season is well documented, this appears to be the first record of egg dumping, and it remains unclear whether it is being carried out by old queens or newly mated young queens.

Coupling semantic and statistical techniques for dynamically enriching web ontologies

With the development of the Semantic Web technology, the use of ontologies to store and retrieve information covering several domains has increased. However, very few ontologies are able to cope with the ever-growing need of frequently updated semantic information or specific user requirements in specialized domains. As a result, a critical issue is related to the unavailability of relational information between concepts, also coined missing background knowledge. One solution to address this issue relies on the manual enrichment of ontologies by domain experts which is however a time consuming and costly process, hence the need for dynamic ontology enrichment. In this paper we present an automatic coupled statistical/semantic framework for dynamically enriching large-scale generic ontologies from the World Wide Web. Using the massive amount of information encoded in texts on the Web as a corpus, missing background knowledge can therefore be discovered through a combination of semantic relatedness measures and pattern acquisition techniques and subsequently exploited. The benefits of our approach are: (i) proposing the dynamic enrichment of large-scale generic ontologies with missing background knowledge, and thus, enabling the reuse of such knowledge, (ii) dealing with the issue of costly ontological manual enrichment by domain experts. Experimental results in a precision-based evaluation setting demonstrate the effectiveness of the proposed techniques.

Darwin's naturalization hypothesis: scale matters in coastal plant communities.

Darwin proposed two seemingly contradictory hypotheses for a better understanding of biological invasions. Strong relatedness of invaders to native communities as an indication of niche overlap could promote naturalization because of appropriate niche adaptation, but could also hamper naturalization because of negative interactions with native species ('Darwin's naturalization hypothesis'). Although these hypotheses provide clear and opposing predictions for expected patterns of species relatedness in invaded communities, so far no study has been able to clearly disentangle the underlying mechanisms. We hypothesize that conflicting past results are mainly due to the neglected role of spatial resolution of the community sampling. In this study, we corroborate both of Darwin's expectations by using phylogenetic relatedness as a measure of niche overlap and by testing the effects of sampling resolution in highly invaded coastal plant communities. At spatial resolutions fine enough to detect signatures of biotic interactions, we find that most invaders are less related to their nearest relative in invaded plant communities than expected by chance (phylogenetic overdispersion). Yet at coarser spatial resolutions, native assemblages become more invasible for closely-related species as a consequence of habitat filtering (phylogenetic clustering). Recognition of the importance of the spatial resolution at which communities are studied allows apparently contrasting theoretical and empirical results to be reconciled. Our study opens new perspectives on how to better detect, differentiate and understand the impact of negative biotic interactions and habitat filtering on the ability of invaders to establish in native communities.

Can Nonloricate Ciliate Assemblages be a Surrogate to Analyze Taxonomic Relatedness Pattern of Ciliated Protozoan Communities for Marine Bioassessment? A Case Study in Jiaozhou Bay, Northern China

Congruency using nonloricate ciliates as a surrogate to analyze taxonomic distinctness pattern of ciliated protozoan communities for assessing water quality was studied. The results showed that (1) with significant consistency with the total ciliate communities, the spatial pattern of nonloricate ciliates was significantly correlated with the changes of environmental status; (2) four taxonomic relatedness measures were significantly correlated with those of the total ciliate communities; (3) spatial variations in four taxonomic diversity indices of nonloricate ciliates were significantly related with the changes of environmental variables, especially nutrients; and (4) the paired taxonomic biodiversity indices of nonloricate ciliates showed a clear decreasing trend of departure from the expected taxonomic breadth in response to water quality. These results suggest that nonloricate ciliate assemblages can be used as a potential surrogate of ciliate communities to assess marine water quality using taxonomic distinctness measures, especially the paired indices based on presence or absence data.

Framing the Salmonidae family phylogenetic portrait: a more complete picture from increased taxon sampling.

Considerable research efforts have focused on elucidating the systematic relationships among salmonid fishes; an understanding of these patterns of relatedness will inform conservation- and fisheries-related issues, as well as provide a framework for investigating evolutionary mechanisms in the group. However, uncertainties persist in current Salmonidae phylogenies due to biological and methodological factors, and a comprehensive phylogeny including most representatives of the family could provide insight into the causes of these difficulties. Here we increase taxon sampling by including nearly all described salmonid species (n = 63) to present a time-calibrated and more complete portrait of Salmonidae using a combination of molecular markers and analytical techniques. This strategy improved resolution by increasing the signal-to-noise ratio and helped discriminate methodological and systematic errors from sources of difficulty associated with biological processes. Our results highlight novel aspects of salmonid evolution. First, we call into question the widely-accepted evolutionary relationships among sub-families and suggest that Thymallinae, rather than Coregoninae, is the sister group to the remainder of Salmonidae. Second, we find that some groups in Salmonidae are older than previously thought and that the mitochondrial rate of molecular divergence varies markedly among genes and clades. We estimate the age of the family to be 59.1 MY (CI: 63.2-58.1 MY) old, which likely corresponds to the timing of whole genome duplication in salmonids. The average, albeit highly variable, mitochondrial rate of molecular divergence was estimated as ∼0.31%/MY (CI: 0.27–0.36%/MY). Finally, we suggest that some species require taxonomic revision, including two monotypic genera, Stenodus and Salvethymus. In addition, we resolve some relationships that have been notoriously difficult to discern and present a clearer picture of the evolution of the group. Our findings represent an important contribution to the systematics of Salmonidae, and provide a useful tool for addressing questions related to fundamental and applied evolutionary issues.