Parsimony Analysis Research Articles

Hershkovitzia (Diptera: Nycteribiidae): revision, phylogeny, and cophylogeny.

Hershkovitzia Guimares & DAndretta, 1956 belongs to Nycteribiidae (Diptera), a family of hematophagous and obligate ectoparasites of bats. Hershkovitzia parasitize bats in the Thyropteridae family, which includes only one genus, Thyroptera Spix, 1823. Hershkovitzia species mostly have a one-to-one association pattern with their hosts, except for H. cabala Peterson & Lacey, 1985 and Hershkovitzia autinoae sp. nov., which share the same host. A review is presented of the species known to date, i.e., H. primitiva Guimares & DAndretta, 1956, H. coeca Theodor, 1967, H. inaequalis Theodor, 1967, H. cabala, and H. mariae Hrycyna, Santos, Rbelo & Graciolli, 2022, and a new species, H. autinoae sp. nov., is described herein. A parsimony analysis of Hershkovitzia was carried out based on a matrix of morphological characters. A cophylogenetic analysis of these parasites and their hosts was performed using a phylogeny of Thyroptera based on a modified version of a previously-published character matrix. As a result, both Hershkovitzia and Thyroptera are monophyletic. Hershkovitzia was divided and organized into two morphological groups based on its phylogeny. As the host of H. coeca is not known, five hypothetical coevolutionary scenarios were performed with each species of Thyroptera. For each coevolutionary scenario only one solution was generated, and all scenarios indicate that the hypothetical ancestor of Hershkovitzia emerged together with the hypothetical ancestor of Thyroptera. An identification key to Hershkovitzia species is presented together with schematic drawings of the abdomen, head, and legs of each species.

Nichima gen. nov. (Alismataceae) based on reproductive structures from the Oligocene-Miocene of Mexico.

Alismataceae, a sub-cosmopolitan 28 family with ca. 17 genera 29 and 113 species, is a large group of aquatic plants. Compression/impressions and bio-inclusions in amber support the documentation of the lineage in low-latitude North America. In Mexico, fossil aquatic plants have been infrequently documented. The new flowers recognize a group mainly known through fruits and seeds. Impression/compression reproductive structures from the Oligocene Los Ahuehuetes locality, Puebla, and bio-inclusions from the Miocene amber of Simojovel de Allende, Chiapas, Mexico, known through 150 samples. They are described and compared with extinct and extant taxa. A parsimony analysis based on 29 floral characters of 17 extant genera of the Alismataceae evaluates the relationship between the fossil material and their potential living relatives. Nichima gen. nov. is a perfect, actinomorphic flower with an expanded receptacle, three persistent sepals with multi-vasculature, delicate and caducous petals, six stamens, and gynoecium composed of three to more superior carpels, maturing into achenes. These characteristics resemble flowers of Alismataceae. Nichima represents an extinct member of the family, with two new species, Nichima magalloniae L. Hern., Cevallos-Ferriz et Hernández-Damián sp. nov. and Nichima gonzalez-medranoi L. Hern., Cevallos-Ferriz et Hernández-Damián, sp. nov. Their phylogenetic position suggests affinity with a clade that includes Baldiella, Echinodorus, and Alisma. Reproductive structures from the Cenozoic of Mexico support the identification of a new extinct genus, Nichima, evidencing Alismataceae's extensive history in North America's low latitudes and suggests a southern extension of the Boreotropical Flora. This article is protected by copyright. All rights reserved.

Phylogenetic Relationships among some Species of the Genus Hypericum (Hypericaceae) in Kurdistan-Rgeion Iraq

Phylogenetic hypotheses for the large cosmopolitan genus Hypericum (St. John’s wort) have previously been based on morphology, and molecular studies have thus far included only a few species. In this study, we used Eight taxa representing 2 sections of the genus Hypericum were analyzed along with one representatives of Thornea calcicola using nuclear internal transcribed spacer ITS and 28SrRNA sequences in order to assess the scope of phylogenetic relationships in this species-rich genus. The resulting parsimony analysis and Bayesian Inference corroborates the actual classification and interspecific affinities. The molecular data provide support for the monophyletic assemblage of the sections in both ITS and 28SrRNA regions trees shows four different clades with minimum changes between species location in both tree. We used Maximum Parsimony and Bayesian approach to reconstruct ancestral states of selected characters, which resulted in recognition of characters that support major clades within the genus Hypericum. The obtained results encourage the use of ITS and 28SrRNA sequence analysis in resolving the phylogenetic relationships within the member rich genus Hypericum. Our results differ somewhat from those of recent morphological and cytological studies. The phylogenetic relationships among Hypericum species have now been mostly resolved via 28SrRNA phylogeny.

Phylogenetics and taxonomy of the Indo-Australian genus Ulonemia sensu Drake (Hemiptera: Tingidae), with the recognition of new genera and species collected from Proteaceae in Australia

Abstract Tingid classification has been problematic since the recognition of the family. The exaggerated ornamentation of many tingids has caused confusion in morphology-based phylogenies due to convergence. Also, some genera, like Ulonemia, lack exaggerated structures and their diagnoses rely on reduced morphology, making identification difficult. The relationship between these genera is of great interest, as several species of Ulonemia have recently become pests of Macadamia, and several of these genera are found on other Proteaceae. We used 16S, COI, 18S, and 28S to determine genus-level relationships of Ulonemia and other Australian Tingidae using maximum likelihood (ML) and Bayesian inference. We also analysed a morphological dataset using maximum parsimony. The parsimony analysis yielded numerous morphological homoplasies, and most deep clades lacked support. The ML and Bayesian analyses had strong support and returned a paraphyletic Ulonemia with three strongly supported clades. Two new genera, Cercotingis gen. nov. and Proteatingis gen. nov., are erected and Ulonemia redescribed to account for the observed phylogenies. Three new species of Cercotingis (C. croajingolong sp. nov., C. namadgi sp. nov., and C. tasmaniensis sp. nov.) and four new species of Proteatingis (Pr. astibosetes sp. nov., Pr. howardi sp. nov., Pr. minuta sp. nov., and Pr. xouthos sp. nov.) are described, with keys to species of Cercotingis and Proteatingis.

Revisiting the Taxonomy of Cylapocoris Carvalho, 1954 (Hemiptera: Miridae: Cylapinae) with Descriptions of Five New Species and Morphology-Based Phylogenetic Analysis of the Genus.

This paper provides descriptions of five new species of the Neotropical genus Cylapocoris Carvalho, 1954 (C. bimaculatus n. sp., C. brooksi n. sp., C. carvalhoi n. sp., C. scutellatus n. sp., and C. simplexoides n. sp.). Cylapocoris and Cylapocoroides Carvalho, 1989 are redescribed and rediagnosed. Illustrations of male genitalia, scanning electron micrographs of selected structures of certain taxa, and an identification key to species are provided. Female genitalia are described and illustrated for the first time for Cylapocoris in nine out of 19 known species. A cladistic analysis of the genus, based on 62 morphological characters, is presented as a contribution to the understanding of relationships within Cylapocoris and its relationships with other groups of Cylapinae. The analysis comprises 16 ingroup species and 15 outgroup taxa. Both equal and implied weighting parsimony analyses were used in the phylogenetic reconstruction. We confirm the monophyly of Cylapocoris and its sister-group relationship with Cylapocoroides. Additionally, we identify subgroupings within Cylapocoris. Intertribal relationships within Cylapinae are briefly discussed.

A new classification of the family Ariidae (Osteichthyes: Ostariophysi: Siluriformes) based on combined analyses of morphological and molecular data

AbstractWe present a new classification of the catfish family Ariidae based on a total-evidence hypothesis, which incorporates data from the examination of 249 morphological and 5603 molecular characters from 131 species. The named taxa in the proposed classification represent groups of species found in the Maximum Parsimony, Maximum Likelihood, and Bayesian Inference analyses or, in some cases, two of the three methods. Each named taxon is provided with a diagnosis derived from a comprehensive summary of the morphological characters and their character-state transformations, as interpreted from the most parsimonious version of the total-evidence tree. Taxa newly named herein are: Cathoropsini, new tribe; Genidentini, new tribe; Sciadeini, new tribe; Aceroichthys, new genus (type species Arius dioctes Kailola, 2000); Bleekeriella, new genus (type species Arius leptaspis Bleeker, 1862); Betancurichthys, new genus (type species Arius madagascariensis Vaillant, 1894); Jayaramichthys, new genus (type species Arius leptonotacanthus Bleeker, 1849); Kyataphisa, new genus (type species Pimelodus nenga Hamilton, 1822); Megalosciades, new genus (type species Arius augustus Roberts, 1978); Paracinetodus, new genus (type species Arius carinatus Weber, 1913); Papuarius, new genus (type species Arius latirostris Macleay, 1883); and Pseudosciades, new genus (type species Arius sona Hamilton, 1822). A key to the genera of Ariidae is presented.

Relationships and taxonomy of the genus Diponthus Stl (Orthoptera: Acridoidea: Romaleidae).

Diponthus Stl, one of the most diversified and widely distributed Romaleinae genera, is endemic to southern South America. This colorful grasshopper genus is placed within Romaleini and currently includes 16 valid species from a total of 22 nominal ones, most of them only known from their original descriptions. The aims of this study were to propose a morphology-based phylogenetic hypothesis of relationships among the species of Diponthus, and to conduct a taxonomic revision, including the description of four previously unknown species. Parsimony analysis of 79 morphological characters strongly recovered the monophyly of genus Diponthus, and Gurneyacris as its sister group. Internal clades within Diponthus were supported by external morphology and coloration patterns, while characters from male genitalia were shown to be more useful for species differentiation. Based on the results of the taxonomic review, Diponthus is constituted by 16 valid species, with the following nomenclatural changes proposed: Diponthus nigroconspersus (Stl) is considered a valid name; D. invidus Carl and D. bilineatus Rehn are synonymized under D. virgatus (Gerstaecker); Diponthus clarazianus Pictet & Saussure is synonymized under D. cribratus (Serville); D. paulista Rehn is synonymized under D. porphyreus (Gerstaecker); D. maculiferus (Walker) is synonymized under D. electus (Serville). New names are proposed for four undescribed species from Bolivia (D. colorbellus sp. nov. and D. dilatatus sp. nov.), Argentina (D. paranaensis sp. nov.) and Brazil (D. salvadorii sp. nov.).

First Report of Cladosporium tenuissimum causing spot diseases on leaves and fruits of cucurbits in Brazil.

Cucurbitaceae crops are widely cultivated in the Northeast region of Brazil, which is the biggest producer of melon and watermelon in the country (Oliveira, 2020). Between November and December 2020 leaves of pumpkins (Cucurbita maxima L.) and watermelon (Citrullus lanatus L.), and leaves and fruits of melon plants (Cucumis melo L.) were collected with moderate to severe necrotic, irregular, and brown lesions from farms in the state of Rio Grande do Norte, Brazil. Fragments of diseased tissues were cut into small pieces and surface disinfested in 70% ethanol for 30 seconds, then in 2% sodium hypochlorite for 1 minute, and washed in sterile distilled water. Disinfested pieces of tissue were plated on potato dextrose agar (PDA) and incubated for seven days in the dark at 28 ± 2 °C. A total of 12 fungal isolates (four from pumpkins, one from watermelon, and seven from melons) were isolated from leaves and symptomatic fruits. All isolates in this study shared similar morphological characteristics. The colonies were dark gray to olive green in color with a velvety texture and surrounded by gray-white hyphae. The conidiophores were erect, tall, dark, and irregularly branched at the apex containing dark conidia, with 0 to 3 septa, variable in shape and size, forming chains that were often branched, globose, or subglobose with 3 to 4.5 μm in diameter. DNA from each isolate was extracted using the SDS method (Smith et al., 2001) and submitted to PCR amplification of the ITS and TEF1α regions with the primers ITS1/ITS4 (White et al. 1990) and EF1-728F/EF1-986R (Carbone and Kohn 1999), respectively. The amplicons were sequenced and deposited in GenBank: ITS (OP493545-OP493556) and TEF1α (OP536836-OP536847). Blastn analysis of the ITS and TEF1α partial sequences revealed that all 12 isolates belong to the species Cladosporium tenuissimum, with 100% nucleotide similarity with sequences of many C. tenuissimum isolates deposited in GenBank. A phylogenetic tree was constructed using the Maximum Parsimony Analysis, with the concatenated sequences (ITS-TEF1α) on MEGAX software (version 11.0.8) (Tamura et al, 2018). All 12 isolates clustered in the same clade and were closely related to isolates A2PP5, A3I1, and XCHK2 with the respective accession numbers KU605789.1, KU605790.1, and MG873071.1 from GenBank, with 99% bootstrap support. The pathogenicity of the 12 isolates was evaluated in pumpkin and melon plants in a greenhouse. Spore suspensions (10 6 conidia/ml -1) were sprayed on the leaves of healthy seedlings until runoff, only water was sprayed on control plants as the mock, and five seedlings of each crop (melon and pumpkin) were inoculated in each treatment. All plants were covered with plastic bags for two days. Spots, similar to those observed on diseased plants in the field, developed on the inoculated leaves (after seven days from the inoculation day, no symptoms were observed on plants from the mock treatment) and the fungal morphology was identical to that observed on the originally diseased leaves, fulfilling Koch's postulate. The pathogenicity test was repeated and yielded the same results. The fact that all 12 isolates were pathogenic on pumpkin and melon leaves, indicates that many Cucurbits are susceptible to C. tenuissimum infection. Many growers in the region are reporting similar symptoms in their melon plantations and it appears that the disease incidence is getting more severe year after year, based on growers's reports. Therefore, more research needs to be conducted to determine the epidemiology and the extension of the economic impact caused by this pathogen to Cucurbits to develop strategies for disease control. To the best of our knowledge, this is the first report of C. tenuissimum causing disease in Cucurbits in Brazil.

Born from rock: eight new species of Itauara Müller, 1888 (Trichoptera: Glossosomatidae) from southeastern Brazil, including phylogenetic and distributional comments on the genus

Eight new species of Itauara Müller, 1888 are described based on specimens collected in southeastern Brazil: I. bispinata sp. nov., I. caparao sp. nov., I. cipoensis sp. nov., I. cristata sp. nov., I. holzenthali sp. nov., I. mangaratiba sp. nov., I. robertsonae sp. nov., and I. rupicola sp. nov. In addition, we provided an updated distributional list of species of Itauara, with new records of I. jamesii Robertson & Holzenthal, 2011 and I. lucinda Robertson & Holzenthal, 2011 for Espírito Santo State (Brazil), I. plaumanni (Flint, 1974) for Paraná State (Brazil), and I. tusci Robertson & Holzenthal, 2011 for Minas Gerais State (Brazil). We performed an equal weighted parsimony analysis adding the new species to the dataset provided by Robertson & Holzenthal (2013), with modification of the interpretation of some morphological characters. The genus was recovered as monophyletic, but overall statistic support for clades was weak. Itauara is restricted to South America and has a disjunct distribution, with some species occurring in northern South America and others in southeastern South America. Probably, the diversification of Itauara in South America is related to the connections between the Amazon Forest and the Atlantic Forest through historical events at different times.

Fruit Rot on Persimmon Caused by Neopestalotiopsis saprophytica and Neopestalotiopsis ellipsospora in Guangxi, China.

Persimmon (Diospyros kaki Thunb.) is widely cultivated in China. On October 15, 2019, about 10% of persimmon fruits showed fruit rot in the orchards of Guilin, Guangxi, China (24°45' N, 110°24' E), which could cause more than 15% of yield losses. The initial symptoms of fruit rot exhibited irregular brown to black spots (range from 2 to 4 cm in diameter), the areas surrounding the blackened spots would be soft and rotten, and three diseased fruit samples were collected from three orchards, respectively. Tissues (5×5 mm) were cut from infected margins, surface-disinfected in 75% ethanol for 10 s, 2% NaClO for 2 min, rinsed three times in sterilized distilled water, and incubated on potato dextrose agar (PDA) at 25°C under 12/12 h light/darkness for a week. Forty-one tissues yielded morphologically similar cultures, and three representative isolates LPG1-1, LPG1-2, and YSG-1 were selected from three samples for further study, respectively. Their colonies showed wavy edges, white surfaces, and dense aerial hyphae on PDA after two weeks. Conidia were fusiform, straight to slightly curved, and 4-septate; basal cells were conical, hyaline, thin, and verruculose with two or three long and hyaline apical appendages and one short apical appendage; three median cells of LPG1-1 with length 14.06 to 17.69 μm (n=100), and LPG1-2 with length 14.03 to 17.61 μm (n=100) were dark brown to olivaceous, while three median cells of YSG-1 with length 12.54 to 15.58 μm (n=100) were dark brown. The conidial sizes of LPG1-1, LPG1-2, and YSG-1 were 17.41 to 27.68 × 4.63 to 8.55 μm (n=100), 18.06 to 27.41 × 4.33 to 8.21 μm (n=100), and 16.58 to 27.73 × 4.99 to 8.39 μm (n=100), respectively. The morphological characteristics were consistent with Neopestalotiopsis spp. (Maharachchikumbura et al. 2012; Maharachchikumbura et al. 2014). Primer pairs ITS4/ITS5, BT2a/BT2b, and EF1-526F/EF-1567R were used to amplify internal transcribed spacer (ITS), beta-tubulin (TUB2), and translation elongation factor 1 alpha (TEF1-α), respectively (Shu et al., 2020). All DNA fragments were sequenced bySangonBiotechCo., Ltd. (Shanghai, China). Sequences have been deposited in GenBank (ITS: OM349120 to OM349122, TUB2: OM688188 to OM688190, TEF1-α: OM688191 to OM688193). Based on BLASTn analysis of ITS, TUB2, and TEF1-α sequences, the LPG1-1 and LPG1-2 showed over 99% similarity to N. saprophytica, and YSG-1 showed over 99% similarity to N. ellipsospora. Phylogenetic analysis of the three isolates was performed with MEGA10 (version 10.0) based on sequences of ITS, TUB2, and TEF1-α using maximum parsimony analysis. The results revealed that LPG1-1 and LPG1-2 were clustered with N. saprophytica, and YSG-1 was clustered with N. ellipsospora. Pathogenicity tests of three isolates were conducted on 72 healthy persimmon fruits with and without wounds, and 9 fruits are for each treatment. The wound was made by a sterilized needle. Fruits were pre-processed with 75% ethanol for 10 s, 1% NaClO for 2 min and rinsed three times in sterile water. Conidial suspensions (10 µL, 106 conidia/mL in 0.1% sterile Tween 20) were inoculated on each site (4 sites/fruit). Control group was treated with 0.1% sterile Tween 20. All inoculated sites were covered with wet cotton. The inoculated fruits were placed in a plastic box to maintain humidity at 28℃. After 5 days, all wounded fruits showed fruit rot, whereas unwounded and control fruits remained asymptomatic, there were significant differences (P<0.05) in aggressiveness between N. saprophytica (average lesion diameter 13.1 mm) and N. ellipsospora (average lesion diameter 14.9 mm). Koch's postulates were fulfilled by re-isolating the causal agents from inoculated fruits. N. ellipsospora was previously reported as an endophyte in D. montana in southern India (Reddy et al. 2016). N. saprophytica could cause leaf spot of Erythropalum scandens and Magnolia sp., and fruit rot of Litsea rotundifolia in China and leaf spot of Elaeis guineensis in Malaysia (Yang et al. 2021, Ismail et al. 2017). To our knowledge, this is the first report of N. ellipsospora and N. saprophytica causing fruit rot on persimmon in the world. The results will provide a foundation for controlling fruit rot caused by pestalotioid fungi on persimmon.

A new approach to exploratory data analysis in hominin phylogenetic reconstruction

The phylogenetic relationships between fossil hominin taxa have been a contentious topic for decades. Recent discoveries of new taxa, rather than resolving the issue, have only further confused it. Compounding this problem are the limitations of some of the tools frequently used by paleoanthropologists to analyze these relationships. Most commonly, phylogenetic questions are investigated using analytical methods such as maximum parsimony and Bayesian analysis. While these are useful analytical tools, these tree-building methods can have limitations when investigating taxa that may have complex evolutionary histories. Exploratory data analysis can provide information about patterns in a dataset that are obscured by tree-based methods. These patterns include phylogenetic signal conflict, which is not depicted in tree-based methods. Signal conflict can have a number of sources, including methodological issues with character choice, taxonomic issues, homoplasy, and gene flow between taxa. In this study, an exploratory data analysis of fossil hominin morphological data is conducted using the tree-based analytical method neighbor-joining and the network-based analytical method neighbor-net with the goal of visualizing phylogenetic signal conflict within a hominin morphological data set. The data set is divided into cranial regions, and each cranial region is analyzed individually to investigate which regions of the skull contain the highest levels of signal conflict. Results of this analysis show that conflicting phylogenetic signals are present in the hominin fossil record during the relatively speciose period between 3 and 1 Ma, and they also indicate that levels of signal conflict vary by cranial region. Possible sources of these conflicting signals are then explored. Exploratory data analyses such as this can be a useful tool in generating phylogenetic hypotheses and in refining character choice. This study also highlights the value network-based approaches can bring to the hominin phylogenetic analysis toolkit.

Confirmation of Itersonilia perplexans infecting pyrethrum (Tanacetum cinerariifolium) in Australia.

Pyrethrum (Tanacetum cinerariifolium (Trevir.) Sch. Bip.) is grown to extract pyrethrins which are active ingredients for insecticides (Greenhill 2007). The Australian pyrethrum industry supplies over 50% of the world market. Surveys of Tasmanian crops in spring 2013, detected the presence of a fungus putatively identified as Itersonilia perplexans Derx. on foliage in 54 of 86 surveyed fields (Hay et al. 2015). This fungus was associated with necrotic leaf tips often spreading to encompass whole leaves. However, pathogenicity to pyrethrum was not confirmed. To isolate, tissue was excised from foliar lesions, surface sterilised using 0.4% NaClO, placed onto 2% water agar and incubated at 20°C for 5 days. Colonies were pure-cultured by hyphal-tip transfer onto potato-dextrose agar. Eleven isolates were cultured onto yeast mold agar (YMA) for 14 days at 15°C in the dark (Horita and Yasuoka 2002). Colonies were slow growing (1.9 to 2.3 mm/day) white to buff on both surfaces, with a darker center visible on lower surfaces. Mycelia were straight and hyaline with clamp connections at the septa. Squares transferred from the edge of YMA colonies onto microscope slides produced ballistoconidia that were aseptate, granular and lunate, kidney or lemon-shaped after 24 h. Ballistoconidia lengths and widths (n = 50/isolate) ranged from 14.6 to 20.4 µm and 10.0 to 13.6 µm. Chlamydospores were not observed. These observations were consistent with descriptions of I. perplexans (Koike and Tjosvold 2001; Liu et al. 2015). All 11 isolates were sequenced across the internal transcribed spacer (ITS) region of rDNA (ITS; primers V9G/ITS4; de Hoog and van den Ende 1998; White et al. 1990), and large (LSU; primers LROR/LR7; Rehner and Samuels 1995), and small (SSU; NS1/NS4; White et al. 1990) subunits of rDNA (Genbank accession nos. KU563626 to KU563658). The ITS (673 bp), SSU (1,047 bp) and LSU (1,318 bp) differed by 3, 1 and 0 bp, respectively, across isolates. Maximum parsimony and maximum likelihood analyses of a concatenated 3 loci alignment with Cystofilobasidiales representatives (Liu et al. 2015) placed all isolates and the I. perplexans ex-neotype strain CBS 363.85 within a single monophyletic clade with 100% bootstrap support. Two representative isolates are stored at the Plant Pathology Herbarium (accession nos. BRIP 57986 and 57987). Leaves of 46-day-old pyrethrum plants (n = 45), generated from surface sterilised seed, were inoculated with a 1.5 × 105 ballistoconidia/ml suspension (equal mix of eight isolates) and maintained between 10 and 22°C under a 12-h photoperiod for 14 days. Brown necrotic leaf tips, consistent with reported field symptoms were observed on 71% of plants and I. perplexans was recovered from 69% of symptomatic plants. For flower inoculations, pyrethrum plants were removed from fields as vegetative plants in spring and maintained in a greenhouse set at 20:14°C and 14:10 h day:night. Open flowers (10 per plant) were dipped into a 1.2 × 104 ballistoconidia/ml suspension mix of three isolates. Brown withered ray florets were observed on 10/12 plants 18 days post-inoculation, matching those described in petal blight of chrysanthemum (McRitchie et al. 1973). I. perplexans was re-isolated from 11/12 inoculated plants and 1 control plant (of 12) which exhibited the same symptoms. In both experiments, I. perplexans was identified based on its distinctive morphology. This confirms the pathogenicity of I. perplexans to both pyrethrum leaves and flowers.

Acynodon adriaticus from Villaggio del Pescatore (Campanian of Italy): Anatomical and chronostratigraphic integration improves phylogenetic resolution in Hylaeochampsidae (Eusuchia)

The hylaeochampsid crocodylomorph Acynodon adriaticus, from the uppermost Cretaceous ‘Villaggio del Pescatore’ site, belongs to an early diverging lineage in Eusuchia. Here an additional specimen, MCSNT 57031, is osteologically and osteohistologically described in detail. After integrating this morphological information together with the recent chronostratigraphic recalibration of the site to the lower–middle Campanian, the tip-dated Bayesian phylogenetic analysis recovers this taxon in a monophyletic clade with the Spanish Acynodon iberoccitanus. Conflicting results from the maximum parsimony and Bayesian analyses, and discussion on the intraspecific variability between the specimens assigned to A. adriaticus, highlights the need for a detailed morphological description and integration with an updated phylogenetic scaffold, in order to resolve the monophyly of the genus Acynodon and the relationships of these branches of early diverging eusuchians. The curious discrepancy between morpho- and osteo-skeletal maturity suggest unique ecomorphological adaptations in this Campanian crocodylomorph.

Multiple mitogenomes indicate Things Fall Apart with Out of Africa or Asia hypotheses for the phylogeographic evolution of Honey Bees (Apis mellifera)

Previous morpho-molecular studies of evolutionary relationships within the economically important genus of honey bees (Apis), including the Western Honey Bee (A. mellifera L.), have suggested Out of Africa or Asia origins and subsequent spread to Europe. I test these hypotheses by a meta-analysis of complete mitochondrial DNA coding regions (11.0 kbp) from 22 nominal subspecies represented by 78 individual sequences in A. mellifera. Parsimony, distance, and likelihood analyses identify six nested clades: Things Fall Apart with Out of Africa or Asia hypotheses. Molecular clock-calibrated phylogeographic analysis shows instead a basal origin of A. m. mellifera in Europe ~ 780 Kya, and expansion to Southeast Europe and Asia Minor ~ 720 Kya. Eurasian bees spread southward via a Levantine/Nilotic/Arabian corridor into Africa ~ 540 Kya. An African clade re-established in Iberia ~ 100 Kya spread thereafter to westerly Mediterranean islands and back into North Africa. Nominal subspecies within the Asia Minor and Mediterranean clades are less differentiated than are individuals within other subspecies. Names matter: paraphyletic anomalies are artefacts of mis-referral in GenBank of sequences to the wrong subspecies, or use of faulty sequences, which are clarified by inclusion of multiple sequences from available subspecies.

Unleashing Abria Sørensen, 1932: New generic rank proposal for a false Venezuelan Cynorta Koch, 1839 (Opiliones: Cosmetidae)

A small group of species historically included in the genus Cynorta C.L. Koch, 1839 has been identified and described in this study. Based on a phylogenetic analysis using morphological data, we propose that these species be recognized as a non-monotypic genus, for which the available name Abria Sørensen, 1932 is used. Abria is newly diagnosed and its species illustrated, and its systematic position in the family Cosmetidae is evaluated by parsimony and Bayesian analyses. Our results reinforce Abria as a separate genus not related to Cynorta, suggest a relationship with some Cynortinae from the Antillas, and challenge the monophyly of the subfamily.The following nomenclatural acts are proposed: Abria Sørensen, 1932 rank nov., revalidated (originally a subgenus of Cynorta, and currently in its synonymy); Abria innominata Henriksen, 1932 (= Cynorta ornatissima González-Sponga, 1992 syn. nov.); Abria maculabnormiscomb. nov (for Cynorta maculabnormis González-Sponga, 1992). and Abria reticulatastat. rev.,comb. nov (for Cynortula reticulata Roewer, 1947) (= Cynorta montis González-Sponga, 1992 syn. nov.).

Geographic Distribution of the Genus Panstrongylus Berg, 1879 in the Neotropic with Emphasis on Trypanosoma cruzi Vectors.

Panstrongylus is a Neotropical taxa of 16 species, some more widespread than others, that act as vectors of Trypanosoma cruzi, the etiologic agent of Chagas disease (CD). This group is associated with mammalian reservoir niches. There are few studies of the biogeography and niche suitability of these triatomines. Using zoo-epidemiological occurrence databases, the distribution of Panstrongylus was determined based on bioclimatic modelling (DIVA GIS), parsimonious niche distribution (MAXENT), and parsimony analysis of endemic species (PAE). Through 517 records, a wide presence of P. geniculatus, P. rufotuberculatus, P. lignarius, and P. megistus was determined and recorded as frequent vectors of T. cruzi in rainforest habitats of 24-30 °C. These distributions were modeled with AUC >0.80 and <0.90, as well as with the seasonality of temperature, isothermality, and precipitation as relevant bioclimatic variables. Individual traces for each taxon in Panstrongylus-1036 records-showed widely dispersed lines for frequent vectors P. geniculatus, P. lignarius, P. rufotuberculatus, and P. megistus. Other occasional vectors showed more restricted dispersal, such as P. howardi, P. humeralis, P. lenti, P. lutzi, P. tupynambai, P. noireaiui, and P. chinai. Areas of defined environmental variation, geological change, and trans domain fluid fauna, such as the American Transition Zone and the Pacific Domain of Morrone, had the highest Panstrongylus diversity. Pan-biogeographic nodes appear to be areas of the greatest species diversity that act as corridors connecting biotopes and allowing fauna migration. Vicariance events in the geologic history of the continent need to be investigated. The geographical distribution of Panstrongylus overlapped with CD cases and Didelphis marsupialis/Dasypus novemcinctus presence, two important reservoirs in Central and South America. The information derived from the distribution of Panstrongylus provides knowledge for surveillance and vector control programs. It would increase information on the most and less relevant vector species of this zoonotic agent, for monitoring their population behavior.

Revised taxonomy of the tribe Leptospermeae (Myrtaceae) based on morphological and DNA data

AbstractNew insights into relationships in the tribe Leptospermeae (Myrtaceae) are presented based on phylogenetic analyses of a 6‐locus, 109‐taxon dataset comprising 98 taxa sampled from all nine genera currently recognised in tribe Leptospermeae, including 76 accessions of Leptospermum s.l., and 11 outgroups representing five related tribes. Maximum parsimony and Bayesian inference analyses of separate plastid and nuclear datasets resolved five major lineages within Leptospermum, which was found to be polyphyletic with respect to other genera in the tribe, including Homalospermum, Kunzea and Neofabricia. These results concur with relationships identified in the companion phylogenomic study of the tribe by Binks &amp; al. We also tested congruence of ovule/seed characters with the clades and the possible synapomorphy of hemitropous ovules for Asteromyrtus + Agonis s.l. To better reflect the wide variation seen in Leptospermum s.l., the genus is here restricted to members of the clade of woody‐fruited taxa found in eastern Australia, New Zealand, the Cook Islands and Malesia. To accommodate the four distinct clades of non‐woody‐fruited taxa, Leptospermopsis is reinstated for one western Australian lineage, and three new genera Apectospermum, Aggreflorum, and Gaudium are created for the other western and two largely eastern lineages, respectively, and 45 new combinations made. A key to Leptospermum and the newly segregated genera is presented. Additionally, eight names are lectotypified.

Phylogeny and taxonomy of Himerometroidea (Echinodermata: Crinoidea).

Himerometroidea is a clade of chiefly shallow-water, tropical, feather-star crinoids that is currently divided, based on morphology, into four families comprising 119 extant species in 31 genera. Our molecular phylogenetic results, based on three mitochondrial (CO1, 16S, CytB) and two nuclear (ITS and 28S) markers for 55 accepted species in 23 of the extant genera, allow for six clades within Himerometroidea to be given family ranks. Maximum parsimony, maximum likelihood, and Bayesian inference analyses recovered largely congruent topologies with varying nodal support. A new classification revises generic placements among five families: Himerometridae, Colobometridae, and Mariametridae, all retained, and Pontiometridae and Stephanometridae both resurrected. Zygometridae is no longer accepted, since the type genus of the family, Zygometra, falls within Himerometridae. Catoptometra was recovered as a sister clade with respect to those treated herein as a new family, Catoptometridae. Two genera, Iconometra and Analcidometra, are retained within Himerometroidea but without family assignments pending further assessment of their positions. Currently published diagnostic and descriptive morphological features are noted where possible to support taxonomic names in the recovered phylogeny, although more examination of morphology is needed to identify synapomorphies and designate taxon names formally.

First report of seedling stem blight of mango caused by Neofusicoccum parvum in Italy.

Seedling blight of mango (Mangifera indica L.) was observed in a commercial nursery located in Messina province (eastern Sicily, Italy) during winter of 2021. More than 30% of 3,000 seedlings, about three to six months old, of mango cv. Gomera 3 showed symptoms of basal stem blight. The symptoms started from seed, led to the decline and subsequent death of the plants. Necrotic lesions appeared at crown level two months after sowing. The stem tissues of ten symptomatic plants were cut, surface sterilized, dipped in 1.5% sodium hypochlorite for 1 min and transferred onto potato dextrose agar medium (PDA) and incubated at 25°C for four days. Approximately 60% of stem tissues developed very similar fungal colonies, resembling to Botryosphaeriaceae. A total of four representative isolates were collected through single hyphal-tip and stored at 4 °C. The internal transcriber spacer region (ITS) was amplified with primers, ITS5/ITS4 (White et al., 1990), and EF1-728F and EF1-986R (Carbone and Kohn, 1999) were used to amplify part of the translation elongation factor 1alpha gene (tef1-α), and primers Bt2a/Bt2b (Glass and Donaldson, 1995) were used for the partial β-tubulin (tub2). The obtained sequences were deposited in GenBank with accession numbers: ON911292-95 for the ITS, ON933621-24 for tef1-α and ON933625-28 for tub2.To compare the results, 50 additional sequences were selected and inserted in the alignment according to the recent literature on the Botryosphaeriaceae (Bezerra et al., 2021; Zhang et al., 2021). Maximum parsimony analysis (MP) of concatenated dataset (ITS + tef1-α + tub2) was performed in PAUP v.4.0a. Clade support was assessed by 1,000 bootstrap replicates and Botryosphaeria dothidea was used as an outgroup. Our isolates clustered within the group of Neofusicoccum parvum (71% bootstrap value) (ex-type CMW9081). Based on these results, and morphological data (50 conidia length × width average: 18.1 × 6.6, respectively) our isolates (named MC) were identified and confirmed as Neofusicoccum parvum (Pennycook & Samuels) Crous, Slippers & A.J.L. Phillips. Pathogenicity tests were also conducted on 18 mango cv. Gomera 3 seedlings. The crown roots of each seedling were mechanically wounded and a mycelial plug of the isolate MC14 was placed onto them and covered with soil. Controls (three seedlings) were inoculated with sterile PDA only. Seedlings were maintained in a growth chamber with a 12 hrs photoperiod at 25°C ± 1°C and watered regularly. After five days, stem lesions appeared externally (1.6 cm) and one month after the inoculation, all the inoculated seedlings died. However, controls did not show any obvious symptoms. Re-isolations were conducted as described above and fulfilled Koch's postulates confirming pathogenicity. Among the diseases affecting mango plants, Botryosphaeriaceae represent a serious threat in Sicily as reported by Aiello et al., 2022. The endophytic behaviour of Botryosphaeriaceae is well known, making them latent pathogens (Slippers and Wingfield, 2007). In Italy, N. parvum was detected in mango orchards since 2013 (Ismail et al. 2013), but symptoms of seedlings stem blight have never been reported in the nursery. In Sicily, an increase of Botryosphaeriaceae infection has been observed recently, especially in nurseries, where N. parvum has been identified as a most destructive pathogen (Aiello et al., 2020; Gusella et al., 2021). To our knowledge, this is the first report worldwide of N. parvum causing mango seedling blight. The high incidence of infected seedlings detected in this study highlights the potential risk during propagation in the nursery, representing a significant source of inoculum for the field.

Urrayira whitei gen. et sp. nov.: a dasyuromorphian (Mammalia: Marsupialia) with incipient zalambdodonty from the Middle Pleistocene of Queensland, Australia

Urrayira whitei gen. et sp. nov. is described based on dental remains from middle Pleistocene cave sites at Mount Etna, Queensland. Its higher-level systematic affinities are unclear but it appears to be a dasyuromorphian. It is unusual in having a specialized reduced dentition characterized by reduction of the stylar cusps, protocone and talonid, resulting in an incipiently zalambdodont morphology that emphasizes the shearing crests. In addition, only two upper premolars are present, and we assume that it is P3 that has been suppressed, as has occurred multiple times within Dasyuridae. Maximum parsimony and undated Bayesian analyses of a 174 morphological character matrix intended to resolve relationships within Dasyuromorphia, with a molecular scaffold enforced, suggest that Urrayira is a dasyurid. In the maximum parsimony analysis, Urrayira is sister to Planigale gilesi (which also lacks P3), whereas in the undated Bayesian analysis, Urrayira resolves as part of a trichotomy at the base of Dasyuridae, together with Sminthopsinae and Dasyurinae; however, support values are generally low throughout the tree. While the majority of rainforest-adapted taxa in the Mount Etna sites became either extinct or were locally extirpated at, or soon after, 280 ka, there is no evidence that U. whitei gen. et sp. nov. even persisted until that time. Urrayira whitei was likely a rainforest-specialist, thus may have been particularly vulnerable to incipient effects of the Mid-Brunhes climatic shift towards aridity that eventually drove the disappearance of the Mount Etna rainforest and its associated fauna.Jonathan Cramb* [jonathan.cramb@qm.qld.gov.au], Queensland Museum, PO Box 3300, South Brisbane BC, Queensland 4101, Australia; Scott Hocknull [scott.hocknull@qm.qld.gov.au], Queensland Museum, PO Box 3300, South Brisbane BC, Queensland 4101, Australia; Robin M. D. Beck [r.m.d.beck@salford.ac.uk], School of Science, Engineering and Environment, University of Salford, Manchester M5 4WT, UK; Shimona Kealy [shimona.kealy@anu.edu.au], Archaeology and Natural History, College of Asia and the Pacific, The Australian National University, Canberra, ACT, 2601, Australia; Gilbert J. Price [g.price1@uq.edu.au], School of Earth and Environmental Sciences, The University of Queensland, Brisbane, Queensland 4072, Australia.