The transplantable VX2 and VX7 carcinomas were analyzed for the presence, the nature, and the physical state of cottontail rabbit papillomavirus (CRPV) DNA sequences. Two CRPV DNA preparations, obtained from pooled cottontail rabbit papillomas, were found highly homogeneous as to their sensitivities to seven restriction endonucleases and were, therefore, considered as wild-type CRPV DNA. A cleavage map of the wild-type genome was constructed by locating 14 restriction sites. The carcinoma cells contained multiple copies of apparently whole viral genomes (42 and 444 genome equivalents per diploid VX2 and VX7 cell DNA contents, respectively), as determined by reassociation kinetic experiments and blot hybridization analyses of restricted VX2 and VX7 cell DNAs. Viral DNA molecules bearing a deletion of about 10% of the genome length, as well as minor sequence rearrangements, were also detected in VX7 carcinoma cells (about 25 copies per diploid cell DNA content). In both VX2 and VX7 cell DNAs, either unrestricted or treated with a no-cut endonuclease for the CRPV genome ( PvuI), viral DNA sequences were present exclusively as slow-migrating species with similar electrophoretic mobilities. The conversion of these species into one-genome-unit-length linear DNA molecules, by a one-cut endonuclease for both wild-type and deleted DNA molecules ( SmaI), shows that the viral sequences are not integrated in the cell genome. After cleavage of VX7 cell DNA by a no-cut endonuclease for deleted DNA molecules ( EcoRI), the deleted molecules migrated with a mobility corresponding to form I and II DNA molecules. This suggests that the viral genomes may be present in carcinoma cells as free catenated DNA molecules.
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