PAH Degradation Research Articles

Effects of simulated low-temperature thermal remediation on the microbial community of a tropical creosote contaminated soil.

In the search for more sustainable remediation strategies for PAH-contaminated soils, an integrated application of thermal remediation and bioremediation (TEB) may allow the use of less impacting temperatures by associating heating to biological degradation. However, the influence of heating on soil microbiota remains poorly understood, especially in soils from tropical regions. This work investigated the effects of low-temperature heating on creosote-contaminated soil bacteria. We used culture-dependent and 16S rRNA sequencing methods to compare the microbial community of soil samples heated to 60 and 100 oC for 1h in microcosms. Heating to 60°C reduced the density of cultivable heterotrophic bacteria compared to control soil (p < 0.05), and exposure to 100°C inactivated the viable heterotrophic community. Burkholderia-Caballeronia-Paraburkholderia (BCP) group and Sphingobium were the predominant genera. Temperature and incubation time affected the Bray-Curtis dissimilarity index (p < 0.05). At 60°C and 30 days incubation, the relative abundance of Sphingobium decreased and BCP increased dominance. The network of heated soil after 30 days of incubation showed fewer nodes and edges but maintained its density and complexity. Both main genera are associated with PAH degradation, suggesting functional redundancy and a likely potential of soil microbiota to maintain biodegradation ability after exposure to higher temperatures. We concluded that TEB can be considered as a potential strategy to bioremediate creosote-contaminated soils, allowing biodegradation in temperature ranges where thermal remediation does not completely remove contaminants. However, we recommend further research to determine degradation rates with this technology.

Does higher ratio of wheat straw addition decrease PAHs degradation in PAHs-contaminated paddy soils and PAHs concentrations in rice?

There are considerable studies focusing on impacts of straw returning on PAHs degradation and bioavailability in PAHs-contaminated upland soils, while similar research in paddy soils is limited. Incubation experiments and pot trials were conducted to study effects of straw returning on PAHs degradation in paddy soils and PAHs accumulation in rice, respectively. There are threshold effects of straw returning on PAHs degradation in PAHs-contaminated paddy soils. The inflection point of PAHs degrading was recorded under 0.8 % wheat straw treatment (conventional (CS) and pretreated wheat straw (PS)), which increased PAHs degradation by 18.13–32.36 %. The lowest PAHs concentrations in rice were recorded under 1 % straw (CS and PS) treatment, which was attributed to the highest PAHs degradation in rhizosphere soils. Compared to CS treatment, PS treatment significantly (p < 0.05) increased PAHs degradation by 7.93–10.28 % and PAHs concentrations in rice by 12.38–45.87 % due to that increasing dissolved organic carbon (DOC) enhanced PAHs concentrations in porewater of rhizosphere soils. Higher diversity enhanced the metabolic pathways and function genes to degrade PAHs by improving bacterial phenotypes and biochemical processes under 1 % wheat straw and PS treatment. The present study firstly demonstrated that the effects of straw returning on PAHs degradation in PAHs-contaminated paddy soils and PAHs concentrations in rice depended on amount and methods of straw returning.

Photocatalysis: A Sustainable Approach for Removing Hazardous Polyaromatic Hydrocarbons

AbstractPolycyclic aromatic hydrocarbons (PAHs) are omnipresent toxic pollutants found in numerous ecosystems, including soil, water, and living organisms. Due to their hydrophobic nature, PAHs tend to accumulate in aquatic environments, leading to high concentrations in aquatic sediments and subsequent bioaccumulation in organisms. This accumulation poses substantial risks to humans and aquatic life. Recent advances in photocatalytic methods, particularly those using nanocomposite materials, have shown promising outcomes in the degradation of PAHs. Photocatalysis, a process that uses UV and visible light to accelerate a chemical reaction, is effectively breaking these harmful compounds. This review focuses on the recent advances in the degradation of PAHs, the toxicological effects of PAHs on living organisms, and the mechanisms underlying nanocomposite‐based photocatalysis. The utilization of nanocomposite for photocatalysis is an eco‐friendly substitute to traditional methods for remediating PAH pollution in the ecosystem. This green approach using nanocomposite‐based photocatalysis offers a sustainable and effective approach for the degradation of PAHs.

Universal intumescent polyelectrolyte complex treatment for cotton, polyester, and blends thereof

Inhibiting the flammability of natural, synthetic, and blended textiles with a single treatment is challenging because of differing fiber properties and chemistries. Intumescent surface treatments that promote char formation can be applied in the form of a polyelectrolyte complex (PEC) containing nitrogen and phosphorus compounds that combat burning in both the condensed and gas phase. Poly(allylamine hydrochloride) (PAH) and poly(sodium phosphate) (PSP) comprise a PEC that reduces the flammability of cotton, polyester, and polyester/cotton (PECO). The incorporation of melamine renders each substrate self-extinguishing. The degradation of PAH is seen to differ between substrates, with gas phase degradation being more prevalent on polyester and heterocyclization occurring on cellulose. Quantitatively, cotton flammability is reduced more than that of polyester, but significant improvements are made to the char yield, heat release, and volatile emission for all fabric types. This water-based coating is rapidly applied in two steps for fire protection. These results demonstrate the versatility of PEC coatings as environmentally-benign fire protection for a variety of chemistries.

Spatial distribution of PAHs and microbial communities in intertidal sediments of the Pearl River Estuary, South China

The exploration of sediment pollution caused by PAHs and its impact on microbial communities can provide valuable insights for the remediation of sediments. The spatial distribution of PAHs and their impact on the microbial community within the Pearl River Estuary were investigated in this study. The findings revealed that the total concentration ranges of 16 PAHs were between 24.26 and 3075.93 ng/g, with naphthalene, fluorene, and phenanthrene potentially exerting adverse biological effects. More PAHs were found to accumulate in subsurface sediments, and their average accumulation rates gradually decreased as the number of rings in PAHs increased, ranging from 180 % for 2-ring to 36 % for 6-ring. The phyla Proteobacteria, Bacteroidetes, Actinobacteria, and Chloroflexi were found to dominate both surface and subsurface sediments The correlation between microbial genera and PAHs contents was weak in sediments with low levels of PAHs contamination, while a more significant positive relationship was observed in sediments with high levels of PAHs contamination. The physicochemical properties of sediments, such as pH, soil structure and Cu significantly influence bacterial community composition in highly contaminated sediments. Additionally, the network analysis revealed that certain bacterial genera, including Novosphingobium, Robiginitalea and Synechococcus_CC9902, played a pivotal role in the degradation of PAHs. These findings are significant in comprehending the correlation between bacterial communities and environmental factors in intertidal ecosystems, and establish a scientific foundation for bioremediation of intertidal zones.

A novel strategy combining hydrogenotrophic methanogens' bioaugmentation and biochar biostimulation for simultaneous polycyclic aromatic hydrocarbon biodegradation and bioenergy recovery.

A novel strategy combining bioaugmentation using methanogenic archaea and biostimulation using biochar was proposed for the first time to obtain simultaneous improvement of mixed PAHs' anaerobic biodegradation and bioenergy production. The results showed that the addition of PHAs immediately resulted in inhibition in methane production and accumulation of VFA, indicating that PHAs are more toxic to methanogens than the acetogenic bacteria. The coupling of biochar with hydrogenotrophic methanogen alleviated the inhibitory effects of PAHs, allowing the anaerobic fermentation system to recover its methane production capability rapidly. Compared to the Fe3+ + bioaugmentation group, the biochar + bioaugmentation group exhibited a 7.5% higher restored cumulative methane production. This coupling strategy ultimately facilitated the degradation of most PAHs, achieving a removal rate of over 90%. Moreover, the coupled biochar and bioaugmentation induced significant changes in the archaeal community structure. Direct interspecies electron guilds (i.e., Streptococcus and Methanosarcina) were enriched in the presence of biochar and bioaugmentation, responsible for prominent PAH removal and methane recovery. This study demonstrated the feasibility of simultaneous PAH biodegradation and bioenergy production using electron acceptor and enriched microorganisms.

Phenanthrene metabolism in Panicum miliaceum: anatomical adaptations, degradation pathway, and computational analysis of a dioxygenase enzyme.

Polycyclic aromatic compounds (PAHs) are persistent organic pollutants of environmental concern due to their potential impacts on food chain, with plants being particularly vulnerable. While plants can uptake, transport, and transform PAHs, the precise mechanisms underlying their localization and degradation are not fully understood. Here, a cultivation experiment conducted with Panicum miliaceum exposed different concentrations of phenanthrene (PHE). Intermediate PHE degradation compounds were identified via GC-MS analysis, leading to the proposal of a phytodegradation pathway featuring three significant benzene ring cleavage steps. Our results showed that P. miliaceum exhibited the ability to effectively degrade high levels of PHE, resulting in the production of various intermediate products through several chemical changes. Examination of the localization and anatomical characteristics revealed structural alterations linked to PHE stress, with an observed enhancement in PHE accumulation density in both roots and shoots as treatment levels increased. Following a 2-week aging period, a decrease in the amount of PHE accumulation was observed, along with a change in its localization. Bioinformatics analysis of the P. miliaceum 2-oxoglutarate-dependent dioxygenase (2-ODD) DAO-like protein revealed a 299 amino acid structure with two highly conserved domains, namely 2OG-FeII_Oxy and DIOX_N. Molecular docking analysis aligned with experimental results, strongly affirming the potential link and direct action of 2-ODD DAO-like protein with PHE. Our study highlights P. miliaceum capacity for PAHs degradation and elucidates the mechanisms behind enhanced degradation efficiency. By integrating experimental evidence with bioinformatics analysis, we offer valuable insights into the potential applications of plant-based remediation strategies for PAHs-contaminated environments.

Simultaneously removal of PAHs from contaminated soil and effluent by integrating soil washing and advanced oxidation processes in a continuous system: Water saving, optimization and scale up modeling

Every year a large amount of clean water turns into contaminated effluent by soil washing (SW) process. The release of this effluent has become a growing environmental threat. In this study, a sustainable approach was developed for effective removal of PAHs from contaminated soil and the effluent by integrating SW and advanced oxidation processes (AOPs) in a continuous system. In the constructed continuous system, first small amount of clean water passed through the contaminated soil to remove PAHs. Then, the polluted effluent was treated by a quick AOPs and recycled for SW processes again and again until a complete removal of PHE be achieved. The performance of the continuous system was optimized and compared with batch system (no circulation) at lab scale. In addition, a scale up modeling was developed to predict the performance of continuous system at large scale. According to the results, under the optimum conditions: Tween 80 (TW80) = 6 g/L, ultrasonic = 160 kW, UV = 30 W, O3 = 5 g/h and TiO2 = 2 g/m2, the final PHE degradation efficiency of 98 % and 94 % were achieved by the continuous and batch systems after 130 and 185 min, respectively. The continuous system used 5 times less water volume than the batch system but resulted in better PAHs degradation. The scale up modeling revealed at large scale (100 kg soil), the continuous system could decrease the energy consumption and the required washing solution (water + TW80) up to 50 % and 80 %, respectively in comparison to the batch system. This work suggests a promising and practical approach for contaminated soil remediation without producing polluted water.

Assessing the impacts of oil contamination on microbial communities in a Niger Delta soil

Oil spills are a global challenge, contaminating the environment with organics and metals known to elicit toxic effects. Ecosystems within Nigeria's Niger Delta have suffered from prolonged severe spills for many decades but the level of impact on the soil microbial community structure and the potential for contaminant bioremediation remains unclear. Here, we assessed the extent/impact of an oil spill in this area 6 months after the accident on both the soil microbial community/diversity and the distribution of polycyclic aromatic hydrocarbon ring-hydroxylating dioxygenase (PAH-RHDGNα) genes, responsible for encoding enzymes involved in the degradation of PAHs, across the impacted area. Analyses confirmed the presence of oil contamination, including metals such as Cr and Ni, across the whole impacted area and at depth. The contamination impacted on the microbial community composition, resulting in a lower diversity in all contaminated soils. Gamma-, Delta-, Alpha- proteobacteria and Acidobacteriia dominated 16S rRNA gene sequences across the contaminated area, while Ktedonobacteria dominated the non-contaminated soils. The PAH-RHDαGN genes were only detected in the contaminated area, highlighting a clear relationship with the oil contamination/hydrocarbon metabolism. Correlation analysis indicated significant positive relationships between the oil contaminants (organics, Cr and Ni), PAH-RHDαGN gene, and the presence of bacteria/archaea such as Anaerolinea, Spirochaetia Bacteroidia Thermoplasmata, Methanomicrobia, and Methanobacteria indicating that the oil contamination not only impacted the microbial community/diversity present, but that the microbes across the impacted area and at depth were potentially playing an important role in degrading the oil contamination present. These findings provide new insights on the level of oil contamination remaining 6 months after an oil spill, its impacts on indigenous soil microbial communities and their potential for in situ bioremediation within a Niger Delta's ecosystem. It highlights the strength of using a cross-disciplinary approach to assess the extent of oil pollution in a single study.

The remediation of polycyclic aromatic hydrocarbon contaminated soil by immobilized microorganisms using distiller's grains.

Polycyclic aromatic hydrocarbons are a persistent organic pollutant, and their biodegradation in the soil is often limited due to the limited degradation ability of indigenous bacteria and the low activity of exogenous PAH degrading bacteria. Immobilized microbial technology can protect microorganisms from the impact of harsh environments, and distiller's grains have the potential as carriers for microbial immobilization. This study aims to use distiller's grains as a microbial carrier, investigate the feasibility of immobilized microorganisms using distiller's grains for remediation of PAH contaminated soil; explore the relationship between soil nutrient content, consumption, and PAH degradation rate; and reveal the mechanism of bioremediation from the perspective of soil enzyme activity and microbial community composition. The results showed that after 72 days of remediation, the removal rates of phenanthrene and pyrene in the treatment of immobilized microorganisms in distiller grains reached 91.78% and 58.59%, respectively. Distiller grains can serve as a carrier for microorganisms, providing them with shelter and nutrients to enhance their chance of survival. Additionally, they can regulate the composition of soil particles and improve aeration, thereby increasing the efficiency of PAH degradation in soil.

Mechanism of phenanthrene degradation by the halophilic Pelagerythrobacter sp. N7

PAHs has shown worldwide accumulation and causes a significant environmental problem especially in saline and hypersaline environments. Moderately halophilic bacteria could be useful for the bioremediation of PAH pollution in hypersaline environments. Pelagerythrobacter sp. N7 was isolated from the PAH-degrading consortium 5H, which was enriched from mixed saline soil samples collected in Shanxi Province, China. 16S rRNA in the genomic DNA revealed that strain N7 belonged to Pelagerythrobacter. Strain N7 exhibited a high tolerance to a wide range of salinities (1–10%) and was highly efficient under neutral to weak alkaline conditions (pH 6–9). The whole genome of strain N7 was sequenced and analyzed, revealing an abundance of catabolic genes. Using the whole genome information, we conducted preliminary research on key enzymes and gene clusters involved in the upstream and downstream PAH degradation pathways of strain N7, thereby inferring its degradation pathway for phenanthrene and naphthalene. This study adds to our understanding of PAH degradation in hypersaline environments and, for the first time, identifies a Pelagerythrobacter with PAH-degrading capability. Strain N7, with its high efficiency in phenanthrene degradation, represents a promising resource for the bioremediation of PAHs in hypersaline environments.

Biosurfactant-enhanced bioremediation of petroleum sludge: Unveiling the potential of Enterobacter cloacae AR-IASST (01)

Petroleum sludge is accidentally released in oil fields and refineries, which can harm the environment because it contains emerging contaminants such as PAHs, BTEX components, heavy metals, and asphaltenes. This study developed a method to eliminate petroleum sludge-related emerging contaminants using a novel bacterium, AR-IASST (01), which can produce biosurfactants (surface tension reduced to 26.4 mN/m). The potential bacterium was Gram-negative, and molecular characterization revealed that the bacterium belongs to Enterobacter cloacae with positive oxidase, catalase, gelatin, hemolytic, and negative glucose fermentation tests. After five days of culture incubation, a degradation of 86.9% was achieved, and biosurfactant production was also observed during the sludge degradation process. The peak numbers in the GC-MS analysis were reduced from 184 to 13 in the treated sample, indicating complete degradation of PAHs in the sludge. The biosurfactant was identified as a rhamnolipid in nature. The biosurfactant was emulsified well with several oils, and an E24 of 100% was achieved against crude oil. The biosurfactant was stable across a wide temperature and salt concentration range, though it was sensitive in highly acidic conditions. Furthermore, the bacterial treatment was found to remove heavy metals viz. nickel (Ni), zinc (Zn), lead (Pb), iron (Fe), chromium (Cr), and copper (Cu) from the sludge sample. Thus, the current study demonstrates that the novel bacterium is highly potent and can be widely used to restore petroleum sludge-contaminated sites.

Study on the accelerated biodegradation of PAHs in subsurface soil via coupled low-temperature thermally treatment and electron acceptor stimulation based on metagenomic sequencing

In situ anoxic bioremediation is a sustainable technology to remediate PAHs contaminated soils. However, the limited degradation rate of PAHs under anoxic conditions has become the primary bottleneck hindering the application of this technology. In this study, coupled low-temperature thermally treatment (<50 °C) and EA biostimulation was used to enhance PAH removal. Anoxic biodegradation of PAHs in soil was explored in microcosms in the absence and presence of added EAs at 3 temperatures (15 °C, 30 °C, and 45 °C). The influence of temperature, EA, and their interaction on the removal of PAHs were identified. A PAH degradation model based on PLSR analysis identified the importance and the positive/negative role of parameters on PAH removal. Soil archaeal and bacterial communities showed similar succession patterns, the impact of temperature was greater than that of EA. Soil microbial community and function were more influenced by temperature than EAs. Close and frequent interactions were observed among soil bacteria, archaea, PAH-degrading genes and methanogenic genes. A total of 15 bacterial OTUs, 1 PAH-degrading gene and 2 methanogenic genes were identified as keystones in the network. Coupled low-temperature thermally treatment and EA stimulation resulted in higher PAH removal efficiencies than EA stimulation alone and low-temperature thermally treatment alone.

Reinforced PAHs degradation in industrial site soil by Fe(III)/NaClO catalytic oxidation system: Insights from promoting hydroxyl radicals generation

Reinforced PAHs degradation in industrial site soil by Fe(III)/NaClO catalytic oxidation system: Insights from promoting hydroxyl radicals generation

Effects of maize straw and root stubble return on degradation and fractions of PAHs in contaminated soils

Effects of maize straw and root stubble return on degradation and fractions of PAHs in contaminated soils

An S-scheme CeO2/ foveolate g-C3N4 composite with horseradish peroxidase activity for photo-enzyme synergistic catalytic degradation of phenanthrene

Nanozyme technology is a relatively new technology that has shown promising applications in the removal of water pollutants. This study utilized a CeO2/foveolate g-C3N4 (CeO2/FCN) composite with S-scheme heterojunction to achieve efficient removal of Phenanthrene (PHE) through a combination of photocatalytic and enzymatic reactions. The S-scheme heterojunction was effective in inhibiting the recombination of photogenerated electron hole pairs, which promoted the generation of·OH and·O2-. Additionally, activated H2O2 enables Ce to achieve redox cycle reaction and generate more·OH for catalytic degradation, effectively improving the concentration of active species and promoting the photo-enzyme synergistic catalytic performance. The experimental results showed that PHE degradation efficiency of CeO2/FCN composite could reach 96.6% in 60 min. Furthermore, the photo-enzyme synergistic catalytic mechanism of CeO2/FCN composite and the possible intermediates generated in the degradation process were studied. The highly toxic PHE was converted into non-toxic green degradation products, providing an effective method for the photo-enzyme synergistic catalytic degradation of PAHs.

Soil drying legacy does not affect phenanthrene fate in soil but modifies bacterial community response

Alteration of the structure of soil microbial communities following the elimination of hydrophobic organic pollutants (e.g., polycyclic aromatic hydrocarbons, PAHs) is generally assessed using DNA-based techniques, and soil is often required to dry prior to pollutant addition, to facilitate a better mix when establishing microcosms. However, the drying practice may have a legacy effect on soil microbial community structure, which would in turn influence the biodegradation process. Here, we used 14C-labeled phenanthrene to examine the potential side effects of precedent short-term drought events. The results indicate that the drying practice had legacy effects on soil microbial community structure, illustrated by irreversible shifts in the communities. The legacy effects had no significant impact on phenanthrene mineralization and non-extractable residue formation. However, they altered the response of bacterial communities to PAH degradation, leading to a decrease in the abundance of potential PAH degradation genes plausibly attributed to moderately abundant taxa. Based on a comparison of the varied effects of different drying intensity levels, an accurate description of microbial responses to phenanthrene degradation strongly relies on the establishment of stable microbial communities before PAH amendment. Concurrent alterations in the communities resulting from environmental perturbation could greatly mask minor alterations from the degradation of recalcitrant hydrophobic PAH. In practice, to minimize the legacy effects, a soil equilibration step with a reduced drying intensity is indispensable.

Formulation of synthetic bacteria consortia for enzymatic biodegradation of polyaromatic hydrocarbons contaminated soil: soil column study.

As an efficient method to remove contaminants from highly polluted sites, enzyme biodegradation addresses unresolved issues such as bioremediation inefficiency. In this study, the key enzymes involved in PAH degradation were brought together from different arctic strains for the biodegradation of highly contaminated soil. These enzymes were produced via a multi-culture of psychrophilic Pseudomonas and Rhodococcus strains. As a result of biosurfactant production, the removal of pyrene was sufficiently prompted by Alcanivorax borkumensis. The key enzymes (e.g., naphthalene dioxygenase, pyrene dioxygenase, catechol-2,3 dioxygenase, 1-hydroxy-2-naphthoate hydroxylase, protocatechuic acid 3,4-dioxygenase) obtained via multi-culture were characterized by tandem LC-MS/MS and kinetic studies. To simulate in situ application of produced enzyme solutions, pyrene- and dilbit-contaminated soil was bioremediated in soil columns and flask tests by injecting enzyme cocktails from the most promising consortia. The enzyme cocktail contained about 35.2 U/mg protein pyrene dioxygenase, 61.4 U/mg protein naphthalene dioxygenase, 56.5 U/mg protein catechol-2,3-dioxygenase, 6.1 U/mg protein 1-hydroxy-2-naphthoate hydroxylase, and 33.5 U/mg protein protocatechuic acid (P3,4D) 3,4-dioxygenase enzymes. It was found that after 6weeks, the average pyrene removal values showed that the enzyme solution could be effective in the soil column system (80-85% degradation of pyrene).

Folin-Ciocalteu assay as a rapid colourimetric screening method for evaluating PAH degradation abilities of heterotrophic bacteria.

The online version contains supplementary material available at 10.1007/s13205-023-03549-4.

RETRACTED: Bioremediation of polycyclic aromatic hydrocarbons: An updated microbiological review

A class of organic priority pollutants known as PAHs is of critical public health and environmental concern due to its carcinogenic properties as well as its genotoxic, mutagenic, and cytotoxic properties. Research to eliminate PAHs from the environment has increased significantly due to awareness about their negative effects on the environment and human health. Various environmental factors, including nutrients, microorganisms present and their abundance, and the nature and chemical properties of the PAH affect the biodegradation of PAHs. A large spectrum of bacteria, fungi, and algae have ability to degrade PAHs with the biodegradation capacity of bacteria and fungi receiving the most attention. A considerable amount of research has been conducted in the last few decades on analyzing microbial communities for their genomic organization, enzymatic and biochemical properties capable of degrading PAH. While it is true that PAH degrading microorganisms offer potential for recovering damaged ecosystems in a cost-efficient way, new advances are needed to make these microbes more robust and successful at eliminating toxic chemicals. By optimizing some factors like adsorption, bioavailability and mass transfer of PAHs, microorganisms in their natural habitat could be greatly improved to biodegrade PAHs. This review aims to comprehensively discuss the latest findings and address the current wealth of knowledge in the microbial bioremediation of PAHs. Additionally, recent breakthroughs in PAH degradation are discussed in order to facilitate a broader understanding of the bioremediation of PAHs in the environment.