Oxygen Sites Research Articles

The role of carboxylate ligand orbitals in the breathing dynamics of a metal-organic framework by resonant X-ray emission spectroscopy.

Metal-organic frameworks (MOFs) exhibit structural flexibility induced by temperature and guest adsorption, as demonstrated in the structural breathing transition in certain MOFs between narrow-pore and large-pore phases. Soft modes were suggested to entropically drive such pore breathing through enhanced vibrational dynamics at high temperatures. In this work, oxygen K-edge resonant X-ray emission spectroscopy of the MIL-53(Al) MOF was performed to selectively probe the electronic perturbation accompanying pore breathing dynamics at the ligand carboxylate site for metal-ligand interaction. It was observed that the temperature-induced vibrational dynamics involves switching occupancy between antisymmetric and symmetric configurations of the carboxylate oxygen lone pair orbitals, through which electron density around carboxylate oxygen sites is redistributed and metal-ligand interactions are tuned. In turn, water adsorption involves an additional perturbation of π orbitals not observed in the structural change solely induced by temperature.

Adsorption of salicyl hydroxamic acid and octyl hydroxamic acid mixture on the cassiterite minerals

Salicylhydroxamic acid (SHA) and octyl hydroxamic acid (OHA) are two commonly used hydroxamic acid-based collectors in fine cassiterite flotation. While some reports suggest that a mixture of OHA and SHA yields superior results compared to their individual use, there is a lack of experimental exploration and theoretical analysis. In this study, the flotation performance and the associated adsorption mechanism of SHA, OHA and their mixture on fine cassiterite particles was systematically investigated. The results demonstrate a synergistic effect between SHA and OHA in enhancing fine cassiterite flotation, with the most significant enhancement occurring at a 1:1 mass ratio under the natural pH conditions. This finding is corroborated by contact angle and zeta potential tests. When both SHA and OHA are present, SHA likely attaches to the cassiterite surface via chemisorption in the form of a five-membered chelate ring, while OHA adheres through physical adsorption, primarily establishing hydrogen bonds with oxygen sites on the cassiterite surface or with SHA molecules. The adsorption ratio of SHA to OHA onto cassiterite surfaces is approximately 69%: 31% when an equal mass of SHA and OHA interact with cassiterite under the natural pH condition.

Synthetic Curcumin Analogs in the Treatment of Cancer: A Literature Review.

Treatment of cancer, one of the most fatal diseases in the present century, has become a topic of global concern. Unfavorable unintentional effects of chemotherapy and radiation treatments have been the main reasons for the research on the discovery of drugs with a broader spectrum of effectiveness and efficiency, with minimal side effects. Curcumin (diferuloylmethane) is a naturally occurring phenolic structure with anticancer properties through its inhibition of cell multiplication, metastasis, and prolongation of cell cycle suppression of apoptosis in various tumor cells. The primary restriction regarding the use of curcumin in cancer treatment is related to poor bioavailability and unfavorable pharmacokinetic profiles of curcumin due to its poor absorption rate, fast metabolism, and systemic elimination. A variety of ways have been proposed to overcome these limitations. With this background, the present study focuses on providing a comprehensive overview of the anticancer properties of curcumin derivatives and the synthesis of curcumin analogs with application to different types of cancers. The regulation of various target and signaling pathways is considered in various cancers, including breast, gastrointestinal, pancreatic, prostate, skin, and lung cancers. A review of the literature indicates that modifying the structure of curcumin through the substitution of the phenyl group and unsaturated carbon branch around the two main sites of oxygen can result in the improvement of physical and chemical properties, as well as the enhancement of physiological activities of the curcumin molecule and the anti-cancer activities of this polyphenol. Curcumin analogs demonstrate anticancer properties at multiple targets at different cell stages and by various signaling biochemical pathways. These include cytokines, transcription factors, growth factors, and modulation of genes involved in cellular proliferation and apoptosis in breast, gastrointestinal, skin, prostate, and lung cancers, thereby mitigating tumor progression.

Probing oxygen exchange between UiO-66(Zr) MOF and water using 17 O solid-state NMR.

The Zr-based Metal Organic Framework (MOF) UiO-66(Zr) is widely employed owing to its good thermal and chemical stabilities. Although the long-range structure of this MOF is preserved in the presence of water during several days, little is known about the formation of defects, which cannot be detected using diffraction techniques. We apply here 17 O solid-state NMR spectroscopy at 18.8 T to investigate the reactivity of UiO-66, through the exchange of oxygen atoms between the different sites of the MOF and water. For that purpose, we have selectively enriched in 17 O isotope the carboxylate groups of UiO-66(Zr) by using it with 17 O-labeled terephthalic acid prepared using mechanochemistry. In the presence of water at 50 °C and a following dehydration at 150 °C, we observe an overall exchange of O atoms between COO- and μ3 -O2- sites. Furthermore, we demonstrate that the three distinct oxygen sites, μ3 -OH, μ3 -O2- and COO- , of UiO-66(Zr) MOF can be enriched in 17 O isotope by post-synthetic hydrothermal treatment in the presence of 17 O-enriched water. These results demonstrate the lability of Zr-O bonds and the reactivity of UiO-66(Zr) with water.

Highly efficient CO2 hydrogenation to methanol over Cu–Ce1-xZrxO2 catalysts prepared by an eco-friendly and facile solid-phase grinding method

In this study, a series of Cu–Ce1-xZrxO2 (x = 0, 0.2, 0.5, 0.8, 1) catalysts were prepared by an eco-friendly and facile solid-phase grinding method. The effect of different Ce/Zr molar ratios on the performance of Cu–Ce1-xZrxO2 catalysts for CO2 hydrogenation to methanol was investigated. The results showed that the Cu–Ce0.5Zr0·5O2 catalyst had the best catalytic performance, with CO2 conversion of 15.2 % and methanol yield of 7.5 % at GHSV = 3600 mL/(gcat·h)); when GHSV was increased to 20,000 mL/(gcat·h), the space-time yield of methanol reached 270.8 gCH3OH/(kgcat·h). X-ray diffraction (XRD), scanning electron microscope (SEM), N2 adsorption-desorption, N2O chemisorption, X-ray photoelectron spectroscopy (XPS), temperature-programmed reduction by H2 (H2-TPR), and temperature programmed desorption (H2-TPD, CO2-TPD) techniques were used to characterize the catalysts, and the higher reactivity of Cu–Ce0.5Zr0·5O2 can be attributed to more Cu0 species, defect oxygen and basic sites. In situ diffuse reflectance infrared Fourier transform spectroscopy (DRIFTs) results revealed that the hydrogenation of CO2 to methanol occurred through the formate intermediate pathway. This work proposed an eco-friendly and facile method for the preparation of high-performance Cu-based catalysts and the systematic study provided a deep insight for the development of high-performance Cu-based catalysts for methanol synthesis from CO2 hydrogenation.

Charge State of Au Atoms on an Oxidized Rutile TiO2(110) Surface by AFM/KPFM at 78 K.

The charge state of noble metal atoms on a semiconductor surface is an important factor in surface catalysis. In this study, Au atoms were deposited on the rutile TiO2(110) surface to characterize its charge properties using atomic force microscopy with Kelvin probe force microscopy at 78 K. Au single atoms, dimers, and trimers at different sites on the surface were investigated. Positively charged Au atoms were verified at oxygen sites, while negatively charged Au atoms were found near oxygen vacancy sites. Furthermore, the charge states of small Au nanoclusters were clarified. Understanding the charge states of Au atoms is significant for identifying their efficient catalytic effects in surface catalysis.

Synthesis of polyoxothiometalates through site-selective post-editing sulfurization of polyoxometalates.

Polyoxometalates (POMs) function as platforms for synthesizing structurally well-defined inorganic molecules with diverse structures, metals, compositions, and arrangements. Although post-editing of the oxygen sites of POMs has great potential for development of unprecedented structures, electronic states, properties, and applications, facile methods for site-selective substitution of the oxygen sites with other atoms remain limited. Herein, we report a direct site-selective oxygen-sulfur substitution method that enables transforming POMs [XW12O40]4- (X = Si, Ge) to Keggin-type polyoxothiometalates (POTMs) [XW12O28S12]4- using sulfurizing reagents in an organic solvent. The resulting POTMs retain the original Keggin-type structure, with all 12 surface W[double bond, length as m-dash]O groups selectively converted to W[double bond, length as m-dash]S without sulfurization of other oxygen sites. These POTMs show high stability against water and O2 in organic solvents and a drastic change in the electronic states and redox properties. The findings of this study represent a facile method for converting POMs to POTMs, leading to the development of their unique properties and applications in diverse fields, including (photo)catalysis, sensing, optics, electronics, energy conversion, and batteries.

Ab initio study of the structural, electronic, and optical properties of MgTiO3 perovskite materials doped with N and P

This study investigates the electronic, optical, and structural properties of MgTiO3 perovskite materials, whether pure or doped with elements such as nitrogen (N) and phosphorus (P). The investigation utilizes density functional theory (DFT) with the GGA-mBJ approximation as implemented in the Wien2k code. The results show that the band gap energy of doped MgTiO3 is significantly lower than that of pure MgTiO3, which has a band gap of 2.933 eV, at oxygen sites with Y (N, and P). In particular, with N and P, the band gaps drop to 1.74 and 0.65 eV moreover, the Fermi energy (Ef) level shifts towards the valence band (VB) in a p-type semiconductor (SC). Further, we have analyzed the optical characteristics of these systems, including their dielectric function (ε1 and ε2), optical conductivity (σ), absorption coefficient (α), and refractive index (n). Furthermore, doping with N and P increases absorption in the visible spectrum, which raises the photocatalytic activity in the presence of light because the doped materials’ valence and conduction bands transition more readily, producing hydrogen. The discoveries above suggest that these materials possess a broad spectrum of applications, encompassing the creation of optoelectronic apparatus.

High-throughput calculations and machine learning modeling of 17O NMR in non-magnetic oxides.

The only NMR-active oxygen isotope, oxygen-17 (17O), serves as a sensitive probe due to its large chemical shift range, the electric field gradient at the oxygen site, and the quadrupolar interaction. Consequently, 17O solid-state NMR offers unique insights into local structures and finds significant applications in the studies of disorder, reactivity, and host-guest chemistry. Despite recent advances in sensitivity enhancement, isotopic labeling, and NMR crystallography, the application of 17O solid-state NMR is still hindered by low natural abundance, costly enrichment, and challenges in handling spectrum signals. Density functional theory calculations and machine learning techniques offer an alternative approach to mapping the local crystal structures to NMR parameters. However, the lack of high-quality data remains a challenge, despite the establishment of some datasets. In this study, we implement and execute a high-throughput workflow combining AiiDA and CASTEP to evaluate the NMR parameters. Focusing on non-magnetic oxides, we have chosen over 7100 binary, ternary, and quaternary compounds from the Materials Project database and performed calculations. Furthermore, using various descriptors for the local crystalline environments, we model the 17O NMR parameters using machine learning techniques, further enhancing our ability to predict and understand 17O NMR parameters in oxide crystals.

Characterization of adsorption sites on IrO2via temperature programmed O2 desorption simulations.

This study presents simulations of temperature-programmed desorption (TPD) profiles using desorption energy data from density functional theory (DFT) calculations. We apply this method to investigate the desorption of oxygen (O2) from IrO2(110) to gain insight into the kinetics of oxygen coupling and desorption, important elementary steps in the oxygen evolution reaction (OER). Initially, we confirm the thermodynamically stable adsorption site for oxygen in the pristine IrO2(110) as IrCUS, even with a high oxygen coverage. We successfully simulate TPD for O2 desorption, achieving good agreement with experimental TPD data for different initial oxygen exposures when including more than one adsorption site. We identify a new adsorption site, related to the formation of steps on IrO2(110)(IrCUS-step-0.5), that is essential for reproducing the experimental TPD. Our findings suggest that the observed TPD peaks are the result of different adsorption sites on the surface, rather than solely a lateral interactions effect. This work provides insight into the behavior of oxygen adsorption on IrO2, with implications for understanding surface reactivity and catalytic processes involving this material.

Construction of a novel nickel-based MOF with accessible oxygen sites for efficient CH4/N2 separation

A novel Ni-based MOF material, TUTJ-201Ni, with accessible oxygen sites, was constructed. The material displayed ultrahigh thermal stability, showing a high separation performance for CH4/N2 mixture.

High adsorption of ammonia in a titanium-based metal-organic framework.

We report the high adsorption of NH3 in a titanium-based metal-organic framework, MFM-300(Ti), comprising extended [TiO6]∞ chains linked by biphenyl-3,3',5,5'-tetracarboxylate ligands. At 273 K and 1 bar, MFM-300(Ti) shows an exceptional NH3 uptake of 23.4 mmol g-1 with a record-high packing density of 0.84 g cm-3. Dynamic breakthrough experiments confirm the excellent uptake and separation of NH3 at low concentration (1000 ppm). The combination of in situ neutron powder diffraction and spectroscopic studies reveal strong, yet reversible binding interactions of NH3 to the framework oxygen sites.

Identification of oxygen sites in β-ketoenamine-linked covalent organic frameworks for highly efficient uranium adsorption through experimental and theoretical studies

Anthropogenic activities involving unintended uranium leakage from nuclear accidents, large-scale uranium mining, or nuclear weapon production have caused health and environmental concerns.

Graphitic nanoflakes modulate the structure and binding of human amylin.

Human amylin is an inherently disordered protein whose ability to form amyloid fibrils is linked to the onset of type II diabetes. Graphitic nanomaterials have potential in managing amyloid diseases as they can disrupt protein aggregation processes in biological settings, but optimising these materials to prevent fibrillation is challenging. Here, we employ bias-exchange molecular dynamics simulations to systematically study the structure and adsorption preferences of amylin on graphitic nanoflakes that vary in their physical dimensions and surface functionalisation. Our findings reveal that nanoflake size and surface oxidation both influence the structure and adsorption preferences of amylin. The purely hydrophobic substrate of pristine graphene (PG) nanoflakes encourages non-specific protein adsorption, leading to unrestricted lateral mobility once amylin adheres to the surface. Particularly on larger PG nanoflakes, this induces structural changes in amylin that may promote fibril formation, such as the loss of native helical content and an increase in β-sheet character. In contrast, oxidised graphene nanoflakes form hydrogen bonds between surface oxygen sites and amylin, and as such restricting protein mobility. Reduced graphene oxide (rGO) flakes, featuring lower amounts of surface oxidation, are amphiphilic and exhibit substantial regions of bare carbon which promote protein binding and reduced conformational flexibility, leading to conservation of the native structure of amylin. In comparison, graphene oxide (GO) nanoflakes, which are predominantly hydrophilic and have a high degree of surface oxidation, facilitate considerable protein structural variability, resulting in substantial contact area between the protein and GO, and subsequent protein unfolding. Our results indicate that tailoring the size, oxygen concentration and surface patterning of graphitic nanoflakes can lead to specific and robust protein binding, ultimately influencing the likelihood of fibril formation. These atomistic insights provide key design considerations for the development of graphitic nanoflakes that can modulate protein aggregation by sequestering protein monomers in the biological environment and inhibit conformational changes linked to amyloid fibril formation.

The role of vanadium substitution in the oxygen sublattice disorder of Ba7Nb4MoO20-based hexagonal perovskite oxide-ion conductors.

Ba7Nb4MoO20-based hexagonal perovskite derivatives are promising oxygen-ion conductors for solid electrolytes in solid-oxide fuel cells and electrolysers. A thorough understanding of chemical substitution and its impact on structural features conducive to high ionic conductivity is fundamental for decreasing the operation temperature of such devices. Here, a new 7H polytype-based composition, namely Ba7Nb3.9-x V x Mo1.1O20.05, is investigated to assess the effect of vanadium substitution. Structural changes upon V incorporation are studied using X-ray and neutron diffraction, as well as 51V and 93Nb solid-state nuclear magnetic resonance spectroscopy. For the undoped composition at room temperature, two distinct oxygen sites (O1 and O5) are found along the palmierite-like layer, corresponding to a mix of four- and six-fold coordination for adjacent M2 cations. At high temperature (527 °C), reorganization of oxygen results in the major occupation of O1 and four-fold (tetrahedral) coordination of the M2 cations. The same rearrangement is observed upon V-substitution, but already at room temperature. From 51V NMR, we identified a tetrahedral coordination for V5+ cations, indicating their preferential occupation of the M2 site. This preferential occupation by V5+ cations is correlated with increasing tetrahedral coordination of Nb5+ cations as observed from 93Nb NMR. Altogether, these observations indicate that V-substitution impacts the oxygen sublattice so as to mimic the high-temperature structure. Additionally, BVSE calculations demonstrate a decreasing energy barrier for O2- migration associated with the presence of vanadium in the structure. This conclusion corroborates the hypothesis that vanadium's propensity for a lower coordination number is beneficial for promoting high O2- mobility in this promising class of oxide-ion conductors.

Modeling the ionization mechanism of amorphous solid particles without an external energy source coupled to mass spectrometry.

Ionization via desorption of charged analytes from the surface of solid amorphous glutaric acid particles, without the assistance of an external energy source, has been shown to be a promising method that can be coupled to mass spectrometry. We conduct mechanistic studies of the later stages of this ionization process using atomistic molecular dynamics. Our analysis focuses on the hydrogen bonding, diffusion, and ion desorption from nano-aggregates of glutaric acid. These nano-aggregates exhibit an extended H-bonded network, often comprising H-bonded chains, linear dimeric assemblies, and occasionally cyclic trimeric assemblies. These local structures serve as centers for proton transfer reactions. The intermediate hydrocarbon chain between the proton-carrying oxygen sites prevents proton diffusion over a long distance unless there is significant translational or rotational movement of the proton-carrying diacid molecule. Our calculations show that diffusion on the surface is an order of magnitude faster than in the core of the nano-aggregate, which aids effective proton transfer on the particle's exterior. We find that ionic species desorb from the aggregate's surface through independent evaporation events of small clusters, where the ion is coordinated by only a few glutaric acid molecules. Near the nano-aggregate's Rayleigh limit, jets capable of releasing multiple ions were not observed. These observations suggest a more general ion-evaporation mechanism that applies to low-dielectric particles of various sizes, complementing the original ion-evaporation mechanism proposed for aqueous droplets with an approximate radius of 10-15 nm. The combined evidence from molecular modeling presented here and the thermodynamic properties of solid and supercooled liquid glutaric acid indicates that the stronger signals of glutaric acid observed in the mass spectra, relative to other experimentally tested diacids, can be attributed to its significantly lower melting point and the reduced enthalpy of vaporization of its amorphous state compared to other tested diacids.

The controlled engineering of surface oxygen defects on Bi2Zr2O7 compounds for catalytic soot combustion by adjusting the preparation methods.

The quantity of surface oxygen vacancies/defects is critical to promote the reactivity of metal oxide catalysts. Therefore, for the controlled engineering of Bi2Zr2O7 with rich surface defects for soot combustion, four different methods have been adopted. Bi2Zr2O7 compounds with a defective fluorite phase but with varied surface vacancy concentrations have been successfully synthesized by various methods. The best catalyst (Bi2Zr2O7-CP) was fabricated by a facile co-precipitation method. Both O2- and O22- were the active surface sites whose number positively correlated to the number of surface oxygen vacancies and determined the activity. Moreover, a sample with more surface vacancies usually had weaker Zr-O bonds, which could be the intrinsic factor to enhance the activity. In addition, a novel and simple method has been developed to accurately titrate the absolute amount of soot reactive oxygen sites and calculate the TOF values. In conclusion, by optimizing the preparation methods, Bi2Zr2O7 catalysts with rich surface defects can be tuned, which may help in designing more applicable soot oxidation catalysts.

A low concentration electrolyte additive for constructing solid-electrolyte interphase on a Zn metal anode for aqueous batteries.

Zn metal anodes in aqueous batteries experience inhomogeneous deposition and corrosion issues. Herein, we introduced, at a low concentration, dioxane (DX) as an electrolyte additive to stabilize a Zn anode. The oxygen sites of DX endowed it with a strong affinity for Zn and Zn2+, resulting in its adsorption onto the Zn electrode surface and its coordination with Zn2+ locally. The Zn2+-DX species exhibited a decreased lowest unoccupied molecular orbital energy level relative to those of water-involved components. The DX additive not only inhibited side reactions but also generated a stable solid-electrolyte interphase on the Zn electrode, ensuring a uniform Zn deposition. As a result of including the additive, the cycle life of the Zn symmetric cell was extended from 99 h to 2100 h, and the coulombic efficiency in Zn//Cu cell reached 99.5%.

Fe-Ni bimetallic atomic catalysts supported on ZIF-8 derived carbon for C3H6-SCR of NO: Catalytic performance and reaction mechanism

N-doped hollow carbon derived from ZIF-8 was utilized as a carrier to prepare the atomically dispersed Fe-Ni bimetallic catalysts, i.e., (Fe, Ni)/NC. The reactivity of C3H6-SCR was evaluated. The strong synergistic interactions between Fe and Ni promoted the activity of C3H6-SCR at low temperatures under different oxygen conditions (0–6 % O2). The NO conversion increased from 74.5 % to 93 % in the 150–300 °C and the N2 selectivity was about 95.5 %. The dual-atom catalysts were characterized by SEM, EELS, XRD, XPS, FTIR, and N2 adsorption/desorption, as well as the AC-HAADF-STEM, XANES, EXAFS, and Wavelet Transform data, etc. Results showed that (Fe, Ni)/NC catalyst showed the rhombic dodecahedral and displayed type IV isotherms with prominent H4 hysteresis loop, suggesting the loading of Fe and Ni atoms on the carbon matrix resulted in the coexistence of micropores and mesopores. Bimetallic active sites can enhance catalytic activity. As reflected by the Fe K-edge EXAFS spectra with k2-weighted Fourier-transform (FT) in R-space, the coordination of active sites Fe-N and Fe-Ni appeared at 1.50 Å and 2.3 Å, respectively. Similarly, the Ni-N and Ni-Fe coordination were found to be positioned at 1.4 Å and 2.3 Å, respectively. The XANES and EXAFS data further confirmed that the (Fe, Ni)/NC catalysts existed in the unique bimetallic active site of the N3-Fe-Ni-N3. In situ DRIFTS showed O2 could promote the production of nitrate and CxHyOz substances, e.g., acetaldehyde and acetate, at Fe-Ni sites or surface defective oxygen sites. Nitrate and acetate species are the main active substances of C3H6-SCR.

Heteroatom-Coordinated Palladium Molecular Catalysts for Sustainable Electrochemical Production of Hydrogen Peroxide.

Currently, hydrogen peroxide (H2O2) manufacturing involves an energy-intensive anthraquinone technique that demands expensive solvent extraction and a multistep process with substantial energy consumption. In this work, we synthesized Pd-N4-CO, Pd-S4-NCO, and Pd-N2O2-C single-atom catalysts via an in situ synthesis approach involving heteroatom-rich ligands and activated carbon under mild reaction conditions. It reveals that palladium atoms interact strongly with heteroatom-rich ligands, which provide well-defined and uniform active sites for oxygen (O2) electrochemically reduced to hydrogen peroxide. Interestingly, the Pd-N4-CO electrocatalyst shows excellent performance for the electrocatalytic reduction of O2 to H2O2 via a two-electron transfer process in a base electrolyte, exhibiting a negligible amount of onset overpotential and >95% selectivity within a wide range of applied potentials. The electrocatalysts based on the activity and selectivity toward 2e- ORR follow the order Pd-N4-CO > Pd-N2O2-C > Pd-S4-NCO in agreement with the pull-push mechanism, which is the Pd center strongly coordinated with high electronegativity donor atoms (N and O atoms) and weakly coordinated with the intermediate *OOH to excellent selectivity and sustainable production of H2O2. According to density functional theory, Pd-N4 is the active site for selectivity toward H2O2 generation. This work provides an emerging technique for designing high-performance H2O2 electrosynthesis catalysts and the rational integration of several active sites for green and sustainable chemical synthesis via electrochemical processes.