African Rice Research Articles

Wild and Cultivated Species of Rice Have Distinctive Proteomic Responses to Drought.

Drought often compromises yield in non-irrigated crops such as rainfed rice, imperiling the communities that depend upon it as a primary food source. In this study, two cultivated species (Oryza sativa cv. Nipponbare and Oryza glaberrima cv. CG14) and an endemic, perennial Australian wild species (Oryza australiensis) were grown in soil at 40% field capacity for 7 d (drought). The hypothesis was that the natural tolerance of O. australiensis to erratic water supply would be reflected in a unique proteomic profile. Leaves from droughted plants and well-watered controls were harvested for label-free quantitative shotgun proteomics. Physiological and gene ontology analysis confirmed that O. australiensis responded uniquely to drought, with superior leaf water status and enhanced levels of photosynthetic proteins. Distinctive patterns of protein accumulation in drought were observed across the O. australiensis proteome. Photosynthetic and stress-response proteins were more abundant in drought-affected O. glaberrima than O. sativa, and were further enriched in O. australiensis. In contrast, the level of accumulation of photosynthetic proteins decreased when O. sativa underwent drought, while a narrower range of stress-responsive proteins showed increased levels of accumulation. Distinctive proteomic profiles and the accumulated levels of individual proteins with specific functions in response to drought in O. australiensis indicate the importance of this species as a source of stress tolerance genes.

Evaluation of Unconventional Supplements to the Diet of Intensively Reared Agouti (Dasyprocta leporina) in Trinidad, West Indies

A feed trial was carried out to evaluate potential unconventional feed resources such as Trichanthera gigantica and moruga hill rice (Oryza glaberrima) as a partial supplementation to the diet of adult male agoutis (Dasyprocta leporina). Supplemental feeding of the agouti will decrease feeding cost to produce this animal and aid in sustainable agricultural practices. Male agoutis were used as this physiological state was the easiest to attain as well as male animals are generally used for meat production. The trial consisted of 16 male agoutis that were allocated into four dietary treatments using a completely randomized experimental design. Four diet treatments were used in the experiment; treatment 1 (T1) was the positive control which consisted of rabbit ration whilst treatment 2 (T2) to 4 (T4) had different ratios of O. glaberrima, Trichanthera gigantica and Rabbit Ration. The feeding trial had 8-week duration. T2 consisted of 5% T. gigantica, 35% O. glaberrima supplemented for rabbit ration. T3 had 10% T. gigantica and 40% O. glaberrima supplemented for rabbit ration. T4 consisted of 15% Trichanthera and 45% O. glaberrima supplemented for rabbit ration in the diet. Proximate analysis showed that Dry Matter (DM) and Ash was highest in T4 and lowest in T2. Whilst ether extract (EE) and crude protein (CP) were highest in T2 and lowest in T4. Crude fiber (CF) was highest in T3 and lowest in T2. The weights of the agoutis at the start of the experiment (2595 g–2971 g) were not significantly different to their final weight (2469–2762 g) (p > 0.05). There was a significant difference seen between treatments groups and weeks of the experiment (p < 0.05). There was no significant difference in the interactions between treatment and weeks (p > 0.05). T1 and T2 were not significantly different (p > 0.05) with respect to average daily gain (−0.98 g/d, −1.61 g/d) and weight loss (55 g, 90 g). T2 can be used as an alternative feed source than rabbit ration (control diet) for adult male agoutis. As the final body mass of the male agoutis did not change with the inclusion of 40% Trichanthera and Moruga hill rice, this substitution can be used to maintain male agoutis before slaughter. However, higher amounts of supplements may be detrimental to this animal.

Analyses of the Root-Knot Nematode (Meloidogyne graminicola) Transcriptome during Host Infection Highlight Specific Gene Expression Profiling in Resistant Rice Plants

The plant-parasitic nematode Meloidogyne graminicola causes considerable damages to rice (Oryza sativa) culture. Resistance to M. graminicola in the related species Oryza glaberrima reduces root penetration by juveniles and stops further nematode development. M. graminicola genes expressed during O. sativa infection were previously characterized but no information is available about the molecular dialogue established with a resistant plant. We compared the M. graminicola transcriptomes of stage-two juveniles (J2s) before and during infection of susceptible or resistant rice. Among 36,121 M. graminicola genes surveyed, 367 were differentially expressed during infection of resistant or susceptible plants. Genes encoding cell wall-degrading enzymes, peptidases and neuropeptides were expressed for a longer time in resistant plants compared to susceptible plants. Conversely, genes related to nematode development were not activated in the resistant host. The majority of M. graminicola effector genes had similar expression patterns, whatever the host genotype. However, two venom allergen-like protein (VAP)-encoding genes were specifically induced in resistant plants and Mg-VAP1 silencing in J2s reduced their ability to colonize roots. This study highlighted that M. graminicola adapts its gene expression to the host susceptibility. Further investigation is required to assess the role of Mg-VAPs in the rice–nematode interaction.

Identification and Fine Mapping of Pi69(t), a New Gene Conferring Broad-Spectrum Resistance Against Magnaporthe oryzae From Oryza glaberrima Steud.

The discovery and deployment of new broad-spectrum resistance (R) genes from cultivated rice and its wild relatives is a strategy to broaden the genetic basis of modern rice cultivars to combat rice blast disease. Oryza glaberrima possessing many valuable traits for tolerance to biotic and abiotic stresses, is an elite gene pool for improvement of Asian cultivated rice. An introgression line IL106 derived from O. glaberrima (Acc. IRGC100137) confers complete resistance to Magnaporthe oryzae in blast nursery. Genetic analysis using 2185 BC6F2 progenies derived from a cross between IL106 and the recurrent parent Dianjingyou 1 showed that IL106 harbors a single dominant resistance gene against M. oryzae strain 09BSH-10-5A. This gene was preliminarily mapped on the long arm of chromosome 6 of rice in a region of ca. 0.9 cM delimited by two SSR markers (RM20650 and RM20701). In order to finely map this gene, 17,100 additional progenies were further analyzed. As a result, this gene was further narrowed down to a region flanked by two molecular markers STS69-15 and STS69-7, and co-segregated with 3 molecular markers, RM20676, STS69-21 and STS69-22 on the long arm of chromosome 6. Based on reference genome sequences, this R gene was mapped in silico in 76.1-Kb and 67.7-Kb physical intervals, and containing 4 and 3 NBS-LRR candidate genes in O. sativa cultivar Nipponbare and O. glaberrima cultivar CG14, respectively. Because no blast resistance gene was finely mapped in this physical interval before, this R gene was considered as not described yet and designated as Pi69(t), which is the first identified and finely mapped blast R gene from O. glaberrima, as far as we know. Evaluation of IL106 with 151 blast strains collected from 6 countries in Asia showed that 148 strains are avirulent on IL106, suggesting that Pi69(t) is a broad-spectrum blast R gene, and a promising resistant resource for improvement of Asian cultivated rice.

Policy options for galvanizing Africa's rice sector against impacts of COVID-19.

Demand for rice consumption in Africa has outstripped the current local production capacities. As a result, African markets have become heavily dependent on importation, especially from Asia. During the COVID-19 pandemic, rice production in both Asia and Africa is likely to be reduced. It is also likely that the major Asian rice exporting countries will resort to stockpiling of their local production, and restrict volumes of (or ban) rice exportation. Such measures could affect demand–supply dynamics and trigger a price crisis in African rice markets. Based on the lessons learnt from the Ebola and Severe Acute Respiratory Syndrome (SARS) epidemics and the 2007–08 food price crisis, African nations need to moderate the impact of such a crisis through appropriate policy actions.

A hybrid sterile locus leads to the linkage drag of interspecific hybrid progenies

Interspecific hybridization plays an important role in rice breeding by broadening access to desirable traits such as disease resistance and improving yields. However, interspecific hybridization is often hindered by hybrid sterility, linkage drag, and distorted segregation. To mine for favorable genes from Oryza glaberrima, we cultivated a series of BC4 introgression lines (ILs) of O. glaberrima in the japonica rice variety background (Dianjingyou 1) in which the IL-2769 (BC4F10) showed longer sterile lemmas, wider grains and spreading panicles compared with its receptor parent, suggesting that linkage drag may have occurred. Based on the BC5F2 population, a hybrid sterility locus, S20, a long sterile lemma locus, G1-g, and a new grain width quantitative trait locus (QTL), qGW7, were mapped in the linkage region about 15 centimorgan (cM) from the end of the short arm of chromosome 7. The hybrid sterility locus S20 from O. glaberrima eliminated male gametes of Oryza sativa, and male gametes carrying the alleles of O. sativa in the heterozygotes were aborted completely. In addition, the homozygotes presented a genotype of O. glaberrima, and homozygous O. sativa were not produced. Surprisingly, the linked traits G1-g and qGW7 showed similar segregation distortion. These results indicate that S20 was responsible for the linkage drag. As a large number of detected hybrid sterility loci are widely distributed on rice chromosomes, we suggest that hybrid sterility loci are the critical factors for the linkage drag in interspecific and subspecific hybridization of rice.

Exploiting interspecific heterosis between African rice and Asian rice

AbstractThe objective of this study was to explore the heterosis of partial interspecific hybrids between African rice (Oryza glaberrima Steud.) and Asian rice (Oryza sativa L.) and its correlation with genetic distance. Sixty‐nine rice accessions including 57 introgression lines (ILs) were tested for population structure and genetic distance. Forty‐nine crosses between ILs and a test variety, Shengtai1 (ST1), were evaluated for midparent heterosis of nine agronomic traits. Population structure, genetic distance, and the proportion of O. glaberrima genome (PGG) of ILs and heterosis of the test crosses were estimated and analyzed. The PGG of the ILs ranged from 1.22 to 49.71%, with an average of 15.29%. The genetic distance between parents of the tested crosses was positively correlated to the PGG of ILs (r = .95, P &lt; .01). Positive heterosis was scored on plant height (12.23%), panicles per plant (19.97%), panicle length (10.37%), spikelets per panicle (24.06%), thousand‐grain weight (14.00%), length/width ratio of grain (0.03%), and grain yield per plant (60.77%) of the partial interspecific hybrids. Although the introgression of more African genomic genes could effectively increase the genetic distance between ILs and the test variety that lead to positive heterosis for most agronomic traits, it could also increase the possibility of the occurrence of interspecific sterility that might decrease the seed setting rate and result in negative heterosis (−2.57%). These data indicated that the introgression of African rice genes into the genome of Asian rice could effectively broaden the genetic diversity, and the deployment of ILs as parents could be a potential way for exploiting interspecific heterosis in rice.

Genetic variability, correlation and path analysis studies for yield and yield attributes in African rice (Oryza glaberrima) germplasm

Thirty-one accessions of Oryza glaberrima were evaluated to study variability, correlation and path analysis for yield and yield attributing traits. Three checks namely, BPT 5204, IR 64 and Swarna for were utilized for comparison of variability parameters. High range of variation, PCV, GCV and high heritability coupled with high genetic advance was observed for days to 50 per cent flowering and the number of spikelets per panicle. Correlation revealed that the number of productive tillers per plant, panicle length, spikelets per panicle, 1000 seed weight, kernel length, and L/B ratio showed a positive association with grain yield. However, days to 50% flowering, plant height and kernel breadth were found to be negatively correlated. Path analysis identified L/B ratio, panicle length and kernel breadth, which had the maximum direct positive effect on grain yield, while, L/B ratio via kernel length and days to 50% flowering via 1000 seed weight exhibited high positive indirect effects on grain yield per plant. Therefore, the selection of accessions with more panicle length and early maturity would be most suitable for selection in yield improvement programs.

Allele mining unlocks the identification of RYMV resistance genes and alleles in African cultivated rice

BackgroundRice yellow mottle virus (RYMV) is a major rice pathogen in Africa. Three resistance genes, i.e. RYMV1, RYMV2 and RYMV3, have been previously described. RYMV1 encodes the translation initiation factor eIF(iso)4G1 and the best candidate genes for RYMV2 and RYMV3 encode a homolog of an Arabidopsis nucleoporin (CPR5) and a nucleotide-binding domain and leucine-rich repeat containing domain (NLR) protein, respectively. High resistance is very uncommon in Asian cultivated rice (Oryza sativa), with only two highly resistant accessions identified so far, but it is more frequent in African cultivated rice (Oryza glaberrima).ResultsHere we report the findings of a resistance survey in a reference collection of 268 O. glaberrima accessions. A total of 40 resistant accessions were found, thus confirming the high frequency of resistance to RYMV in this species. We analysed the variability of resistance genes or candidate genes in this collection based on high-depth Illumina data or Sanger sequencing. Alleles previously shown to be associated with resistance were observed in 31 resistant accessions but not in any susceptible ones. Five original alleles with a frameshift or untimely stop codon in the candidate gene for RYMV2 were also identified in resistant accessions. A genetic analysis revealed that these alleles, as well as T-DNA insertions in the candidate gene, were responsible of RYMV resistance. All 40 resistant accessions were ultimately linked to a validated or candidate resistance allele at one of the three resistance genes to RYMV.ConclusionThis study demonstrated that the RYMV2 resistance gene is homologous to the Arabidopsis CPR5 gene and revealed five new resistance alleles at this locus. It also confirmed the close association between resistance and an amino-acid substitution in the leucine-rich repeat of the NLR candidate for RYMV3. We also provide an extensive overview of the genetic diversity of resistance to RYMV in the O. glaberrima species, while underlining the contrasted pattern of diversity between O. glaberrima and O. sativa for this trait. The different resistance genes and alleles will be instrumental in breeding varieties with sustainable field resistance to RYMV.

Genome-wide identification of the peptide transporter family in rice and analysis of the PTR expression modulation in two near-isogenic lines with different nitrogen use efficiency

BackgroundNitrogen (N) is a major nutrient element for crop growth. In plants, the members of the peptide transporter (PTR) gene family may involve in nitrate uptake and transport. Here, we identified PTR gene family in rice and analyzed their expression profile in near-isogenic lines.ResultsWe identified 96, 85 and 78 PTR genes in Nipponbare, R498 and Oryza glaberrima, and the phylogenetic trees were similar in Asian cultivated rice and African cultivated rice. The number of PTR genes was higher in peanut (125) and soybean (127). The 521 PTR genes in rice, maize, sorghum, peanut, soybean and Arabidopsis could be classified into 4 groups, and their distribution was different between monocots and dicots. In Nipponbare genome, the 25 PTR genes were distributed in 5 segmental duplication regions on chromosome 1, 2, 3, 4, 5, 7, 8, 9, and 10. The PTR genes in rice have 0–11 introns and 1–12 exons, and 16 of them have the NPF (NRT1/PTR family) domain. The results of RNA-seq showed that the number of differentially expressed genes (DEGs) between NIL15 and NIL19 at three stages were 928, 1467, and 1586, respectively. Under low N conditions, the number of differentially expressed PTR genes increased significantly. The RNA-seq data was analyzed using WGCNA to predict the potential interaction between genes. We classified the genes with similar expression pattern into one module, and obtained 25 target modules. Among these modules, three modules may be involved in rice N uptake and utilization, especially the brown module, in which hub genes were annotated as protein kinase that may regulate rice N metabolism.ConclusionsIn this study, we comprehensively analyzed the PTR gene family in rice. 96 PTR genes were identified in Nippobare genome and 25 of them were located on five large segmental duplication regions. The Ka/Ks ratio indicated that many PTR genes had undergone positive selection. The RNA-seq results showed that many PTR genes were involved in rice nitrogen use efficiency (NUE), and protein kinases might play an important role in this process. These results provide a fundamental basis to improve the rice NUE via molecular breeding.

Evolutionarily conserved plant genes responsive to root-knot nematodes identified by comparative genomics.

Root-knot nematodes (RKNs, genus Meloidogyne) affect a large number of crops causing severe yield losses worldwide, more specifically in tropical and sub-tropical regions. Several plant species display high resistance levels to Meloidogyne, but a general view of the plant immune molecular responses underlying resistance to RKNs is still lacking. Combining comparative genomics with differential gene expression analysis may allow the identification of widely conserved plant genes involved in RKN resistance. To identify genes that are evolutionary conserved across plant species, we used OrthoFinder to compared the predicted proteome of 22 plant species, including important crops, spanning 214 Myr of plant evolution. Overall, we identified 35,238 protein orthogroups, of which 6,132 were evolutionarily conserved and universal to all the 22 plant species (PLAnts Common Orthogroups-PLACO). To identify host genes responsive to RKN infection, we analyzed the RNA-seq transcriptome data from RKN-resistant genotypes of a peanut wild relative (Arachis stenosperma), coffee (Coffea arabica L.), soybean (Glycine max L.), and African rice (Oryza glaberrima Steud.) challenged by Meloidogyne spp. using EdgeR and DESeq tools, and we found 2,597 (O. glaberrima), 743 (C. arabica), 665 (A. stenosperma), and 653 (G. max) differentially expressed genes (DEGs) during the resistance response to the nematode. DEGs' classification into the previously characterized 35,238 protein orthogroups allowed identifying 17 orthogroups containing at least one DEG of each resistant Arachis, coffee, soybean, and rice genotype analyzed. Orthogroups contain 364 DEGs related to signaling, secondary metabolite production, cell wall-related functions, peptide transport, transcription regulation, and plant defense, thus revealing evolutionarily conserved RKN-responsive genes. Interestingly, the 17 DEGs-containing orthogroups (belonging to the PLACO) were also universal to the 22 plant species studied, suggesting that these core genes may be involved in ancestrally conserved immune responses triggered by RKN infection. The comparative genomic approach that we used here represents a promising predictive tool for the identification of other core plant defense-related genes of broad interest that are involved in different plant-pathogen interactions.

Novel allelic variation in the Phospholipase D alpha1 gene (OsPLD\u03b11) of wild Oryza species implies to its low expression in rice bran

Rice bran, a by-product after milling, is a rich source of phytonutrients like oryzanols, tocopherols, tocotrienols, phytosterols, and dietary fibers. Moreover, exceptional properties of the rice bran oil make it unparalleled to other vegetable oils. However, a lipolytic enzyme Phospholipase D alpha1 (OsPLDα1) causes rancidity and ‘stale flavor’ in the oil, and thus limits the rice bran usage for human consumption. To improve the rice bran quality, sequence based allele mining at OsPLDα1 locus (3.6 Kb) was performed across 48 accessions representing 11 wild Oryza species, 8 accessions of African cultivated rice, and 7 Oryza sativa cultivars. From comparative sequence analysis, 216 SNPs and 30 InDels were detected at the OsPLDα1 locus. Phylogenetic analysis revealed 20 OsPLDα1 cDNA variants which further translated into 12 protein variants. The O. officinalis protein variant, when compared to Nipponbare, showed maximum variability comprising 22 amino acid substitutions and absence of two peptides and two β-sheets. Further, expression profiling indicated significant differences in transcript abundance within as well as between the OsPLDα1 variants. Also, a new OsPLDα1 transcript variant having third exon missing in it, Os01t0172400-06, has been revealed. An O. officinalis accession (IRGC101152) had lowest gene expression which suggests the presence of novel allele, named as OsPLDα1-1a (GenBank accession no. MF966931). The identified novel allele could be further deployed in the breeding programs to overcome rice bran rancidity in elite cultivars.

Bridging old and new: diversity and evaluation of high iron-associated stress response of rice cultivated in West Africa.

Adoption of rice varieties that perform well under high iron-associated (HIA) stress environments can enhance rice production in West Africa. This study reports the genetic characterization of 323 rice accessions and breeding lines cultivated in West Africa using genotyping-by-sequencing and their phenotypic response to HIA treatments in hydroponic solution (1500 mg l-1 FeSO4·7H2O) and hot-spot fields. The germplasm consisted of four genetic subpopulations: Oryza glaberrima (14%), O. sativa-japonica (7%), O. sativa-indica Group 1 (45%), and O. sativa-indica Group 2 (25%). Severe versus mild stress in the field was associated with a reduced SPAD value (12%), biomass (56%), and grain yield (57%), with leaf bronzing explaining 30% and 21% of the variation for biomass and grain yield, respectively. Association mapping using 175 indica genotypes identified 23 significant single nucleotide polymorphism (SNP) markers that mapped to 14 genomic regions. Genome-wide association study (GWAS) signals associated with leaf bronzing, a routinely used indicator of HIA stress, differed in hydroponic compared with field conditions. Contrastingly, six significant SNPs on chromosomes 8 and 9 were associated with the SPAD value under HIA stress in both field and hydroponic experiments, and a candidate potassium transporter gene mapped under the peak on chromosome 8. This study helps define criteria for assessing rice performance under HIA environments.

Genetic diversity of African’s rice (Oryza glaberrima Steud.) accessions cultivated under iron toxicity

Iron toxicity stress is one of the most important constraints to rice production in Togo. Although several methods were explored to control this stress, the best one is still the genetic control through the use of tolerant or resistant varieties. Our hypothesis is that African’s rice, Oryza glaberrima, accessions contain sources of tolerance or resistance to the iron toxicity stress. Thus, the aim of this study was to determine the level and the structure of the African’s rice, Oryza glaberrima, genetic diversity and to identify tolerant genotypes. Two hundred and four (204) accessions obtain from Africa Rice genebank and eight control varieties were evaluated under iron toxicity conditions using alpha lattice design with three replications. There was significant variability among accessions for height of mature plants and weight of 1000 seeds. The coefficient of variation values ranged from 10.56% for the 50% flowering to 77.47% for the sterility rate. The principal component analysis (PCA) with all the measured characteristics revealed that the first four axes accounted for 59.93% of the total variability. The coordinates of the variables showed that, six (6) accessions (T30, T60, H60, Tf, yield and Tox60) are associated to the factor F1 with an eigenvalue of 2,81. A high correlation between 50% flowering and plant height, fertile tillers and number of tillers, sterility rate and total number of seeds and yield were also observed. The accessions were divided into three (3) distinct groups. Sixty (60) accessions and four (4) controls (CG14, IR64, Azucena Whyte and NERICA L-20) identified as tolerant genotypes were clustered together in Group 3. These tolerant accessions could be exploited in the rice breeding program for the tolerance to iron toxicity stress.

CRISPR-mediated accelerated domestication of African rice landraces.

African Oryza glaberrima and Oryza sativa landraces are considered valuable resources for breeding traits due to their adaptation to local environmental and soil conditions. They often possess superior resistance to endemic pests and tolerance to drought and nutrient deficiencies when compared to the “imported” high production Asian rice varieties. In contrast, “domestication traits” such as seed shattering, lodging, and seed yield are not well established in these African landraces. Therefore, the use of these African varieties for high production agriculture is limited by unpredictable yield and grain quality. We are addressing this shortcoming by developing protocols for genetically transforming African landraces to allow the use of CRISPR-Cas mediated breeding approaches. Here we use as proof of concept the cultivated African landrace Kabre to target selected known “domestication loci” and improve the agronomic potential of Kabre rice. Stable genetic transformation with CRISPR-Cas9-based vectors generated single and simultaneous multiple gene knockouts. Plants with reduced stature to diminish lodging were generated by disrupting the HTD1 gene. Furthermore, three loci shown to control seed size and/or yield (GS3, GW2 and GN1A) were targeted using a multiplex CRISPR-Cas9 construct. This resulted in mutants with significantly improved seed yield. Our study provides an example of how new breeding technologies can accelerate the development of highly productive African landrace rice varieties, an important advancement considering that Africa is a hotspot for worldwide population growth and therefore prone to food shortage.

Improved hybrid de novo genome assembly and annotation of African wild rice, Oryza longistaminata, from Illumina and PacBio sequencing reads.

African wild rice Oryza longistaminata, one of the eight AA- genome species in the genus Oryza, possesses highly valued traits, such as the rhizomatousness for perennial rice breeding, strong tolerance to biotic and abiotic stresses, and high biomass production on poor soils. To obtain the high-quality reference genome for O. longistaminata we employed a hybrid assembly approach through incorporating Illumina and PacBio sequencing datasets. The final genome assembly comprised only 107 scaffolds and was approximately ∼363.5 Mb, representing ∼92.7% of the estimated African wild rice genome (∼392 Mb). The N50 lengths of the assembled contigs and scaffolds were ∼46.49 Kb and ∼6.83 Mb, indicating ∼3.72-fold and ∼18.8-fold improvement in length compared to the earlier released assembly (∼12.5 Kb and 364 Kb, respectively). Aided with Hi-C data and syntenic relationship with O. sativa, these assembled scaffolds were anchored into 12 pseudo-chromosomes. Genome annotation and comparative genomic analysis reveal that lineage-specific expansion of gene families that respond to biotic- and abiotic stresses are of great potential for mining novel alleles to overcome major diseases and abiotic adaptation in rice breeding programs. This reference genome of African wild rice will greatly enlarge the existing database of rice genome resources and unquestionably form a solid base to understand genomic basis underlying highly valued phenotypic traits and search for novel gene sources in O. longistaminata for the future rice breeding programs.

Effectiveness of Entomopathogenic Nematodes against the African White Rice Stem Borer Maliarpha separatella Rag

The efficacy of three entomopathogenic nematodes (EPN) species Steinernema carpocapsae Weiser, Steinernema karii Waturu, Hunt & Reid, Heterorhabdtids indica Poinar, Karunaka & David and two EPN isolates collected from Coastal Kenya (EX MOMBASA) and Rift valley (EX NAKURU) was evaluated against larvae of African white rice stem borer, Maliarpha separatella Rag. The experiment was carried out using no- choice modified filter paper bioassay at KARI-Mwea. Whatman filter paper was substituted with white cotton cloth discs. The activity of the biological agents under study was determined at 25℃ and 65% relative humidity, with concentrations of 50, 100 and 200 infective juveniles (IJs) per one M. separatella third instar larva. The larvae were confined in 60mm plastic petri dishes in darkness as the larvae spend their entire life inside the rice stems. The mortality rate was determined at 24, 48, 72 and 96 hours after application of the nematode suspension. Significant virulence was obtained with all the nematode species at 200 infective juveniles (IJs). There was low mortality at 50 and 100 concentration rates. All the EPNs significantly reduced M. separatella larvae after 48 hours in the following order H. indica> EX NAKURU> S. carpocapsae> EX MOMBASA >S. karii. The number of nematodes from the infected cadavers after 48 hours post infection was H. indica (553), EX –MSA (294), EX-NKU (242), S. karii (168) and S. carpocapsae (157). S. karii took the longest time (96 hours) to kill all the test insects. In conclusion, the study shows that EPNs are effective against M. separatella and could be used within an integrated pest management strategy for the pest. There is need to carry out further studies to determine effective dosages under field conditions.

Very high sensitivity of African rice to artificial ultraviolet-B radiation caused by genotype and quantity of cyclobutane pyrimidine dimer photolyase

Ultraviolet-B (UVB) radiation damages plants and decreases their growth and productivity. We previously demonstrated that UVB sensitivity varies widely among Asian rice (Oryza sativa L.) cultivars and that the activity of cyclobutane pyrimidine dimer (CPD) photolyase, which repairs UVB-induced CPDs, determines UVB sensitivity. Unlike Asian rice, African rice (Oryza glaberrima Steud. and Oryza barthii A. Chev.) has mechanisms to adapt to African climates and to protect itself against biotic and abiotic stresses. However, information about the UVB sensitivity of African rice species is largely absent. We showed that most of the African rice cultivars examined in this study were UVB-hypersensitive or even UVB-super-hypersensitive in comparison with the UVB sensitivity of Asian O. sativa cultivars. The difference in UVB resistance correlated with the total CPD photolyase activity, which was determined by its activity and its cellular content. The UVB-super-hypersensitive cultivars had low enzyme activity caused by newly identified polymorphisms and low cellular CPD photolyase contents. The new polymorphisms were only found in cultivars from West Africa, particularly in those from countries believed to be centres of O. glaberrima domestication. This study provides new tools for improving both Asian and African rice productivity.

The contribution of plant traits and soil microbes to phosphorus uptake from low-phosphorus soil in upland rice varieties

Popular African upland rice variety Nerica4 performs poorly under phosphorus (P) deficiency; the objective was to identify plant and soil traits likely to improve its P efficiency. Field and glasshouse experiments compared P uptake and root parameters between the popular rice genotype Nerica4, and a known P-efficient genotype, DJ123. Glasshouse experiments used fresh field soil, sterilized soil and sterilized soil resupplied with 15% fresh field soil to assess microbial effects. DJ123 had faster crown root development and higher proportions of fine roots, leading to larger root surface area (RSA). Additionally, it acquired more P per RSA, thus had more efficient roots. Higher root efficiency of DJ123 compared to Nerica4 was detected in fresh field soil, sterile soil, and sterile+resupplied soil, indicating that plant-specific factors rather than soil microbiome effects explained higher root efficiency in DJ123. In non-sterile soils both genotypes were colonized by arbuscular mycorrhizal fungi (AMF), and high expression of an AMF-induced rice P transporter gene (OsPT11) indicated the symbiosis was functional. We identified plant traits present in DJ123 such as rapid crown root development, higher proportions of fine lateral roots, as well as superior overall root efficiency that make it a promising donor to improve the performance of Nerica4 in P-deficient environments. In addition, Nerica4 appears more susceptible to growth-inhibitory effects of the soil microbiome.

Production of Noodles from Rice (&amp;lt;i&amp;gt;Oryza sativa&amp;lt;/i&amp;gt;), African Yam Bean (&amp;lt;i&amp;gt;Sphenostylis stenocarpa&amp;lt;/i&amp;gt;) and Rice Bran: A Tool for Ameliorating PEM and Hidden Hunger in Nigeria

In this study, the chemical composition and sensory properties of noodles prepared from flour blends of broken rice (R), African yam bean (AYB) and rice bran (B) were determined. A preliminary work was carried out to ascertain the optimal acceptable level of rice bran using 0 to 14% (w/w) addition to rice flour noodle processing. Rice bran yielded the most acceptable noodles at 8% (w/w). Consequently in the main study, the level of rice bran was maintained at 8% (w/w) while AYB and rice flours were varied in the ratios of 100:0:0, 92:0:8, 83:9:8, 64:28:8 and 46:46:8% giving a total of five samples. The noodles were characterized for proximate, mineral contents and sensory evaluation. The protein content of the noodles ranged between 5.8 and 18.4%, increasing with increasing ratios of AYB. Potassium, sodium and magnesium were the predominant minerals in the noodles ranging from 57.00 to 200.40 mg/100g, 1.60 to 105.10 mg/100g and 19.20 to 116.30 mg/100g respectively. Cooking time ranged from 6.0 to 8.3 min with sample 46:46:8R: AYB: B taking the longest time to cook while the control (Rice noodle) cooked fastest. Sample 46:46:8R: AYB: B had the highest sensory scores of 7.3 on a 9 point hedonic scale for General acceptability.