Rib-to-deck welded joints are among the most susceptible to fatigue in orthotropic bridge decks (OSDs). Prior research has primarily examined the stress intensity factor (SIF) and propagation morphology of a solitary fracture at these joints, allocating limited attention to the investigation of the propagation of multiple cracks. This paper presents a methodology for simulating and computing the weld toe magnification factor and the SIF of semi-elliptical surface cracks in innovative double-sided welded rib-to-deck (DWRTD) joints. The intention was to simplify the calculation of the SIF for this fatigue detail. The SIF obtained from the calculation model in combination with a multiple crack coalescence approach resulted in a series of fatigue life prediction models of multiple co-planar semi-elliptical cracks. Compared with the results of fatigue tests on the DWRTD joints, the calculated fatigue life and propagation morphology of multiple cracks from the model showed good agreement. Finally, the parameters were analysed to investigate the effects of crack number, bridge deck thickness, residual stress, and penetration rate. Compared to a single crack, multiple cracks reduced the service life of the bridge deck by approximately 30%. When the bridge deck thickness increases from 12 mm to 20 mm, the nominal stress amplitude near the weld ∆σ decreases by 2.2 times, resulting in a 7-fold increase in crack propagation time. Compared to penetration rate and residual stress, ∆σ is the most crucial factor affecting fatigue propagation life. Therefore, it is suggested to increase the thickness of the bridge deck during design.