Organometallic Chains Research Articles

Unraveling the Origin of Elemental Chemical Shift and the Role of Atomic Hydrogen in a Surface Ullmann Coupling System.

The Ullmann coupling of aryl halides is a powerful method in the on-surface synthesis of functional materials. Understanding its basic aspects and influencing factors can aid in the use of this tool for the fabrication of intriguing structures. In this study, we unveil (1) the origin of the shift in the elemental binding energy (BE) and (2) the functions of atomic hydrogen (AH) in a typical Ullmann coupling system using combined spectroscopy and microscopy techniques. During debromination of the aryl halide precursor, the work function (WF) alteration is correlated with the surface Br amount. The WF change instead of C-Ag formation is proposed to play a dominant role in the shift of the molecular C 1s BE. AH dosing onto organometallic chains leads to chain decomposition and surface Br removal. In contrast, AH dosing onto covalent poly(para-phenylene) (PPP) chains results in superhydrogenation in addition to Br removal. The C 1s BE shift is attributed to both WF change and superhydrogenation effects. Thermal annealing restores the PPP chains by eliminating superhydrogenation, which causes the C 1s BE to shift to a high BE. This study provides deep insights into the mechanisms of Ullmann coupling on surfaces, highlighting the significant role of WF alterations and AH treatments in these processes.

On-surface synthesis of Au–C4 and Au–O4 alternately arranged organometallic coordination networks via selective aromatic C–H bond activation

Selective activation of the C–H bond of aromatic hydrocarbons is significant in synthetic chemistry. However, achieving oriented C–H activation remains challenging due to the poor selectivity of aromatic C–H bonds. Herein, we successfully constructed alternately arranged Au–C4 and Au–O4 organometallic coordination networks through selective aromatic C–H bond activation on Au(111) substrate. The stepwise reaction process of the 5, 12-dibromopyrene 3,4,9, 10-tetracarboxylic dianhydride precursor is monitored by high-resolution scanning tunneling microscopy. Our results show that the gold atoms in C–Au–C organometallic chains play a crucial role in promoting the selective ortho C–H bonds activation and forming Au–C4 coordination structure, which is further demonstrated by a comparative experiment of PTCDA precursor on Au(111). Furthermore, our experiment of 2Br-PTCDA precursor on Cu(111) substrate confirms that copper atoms in C–Cu–C organometallic chains can also assist the formation of Cu–C4 coordination structure. Our results reveal the vital effect of organometallic coordination on selective C–H bond activation of reactants, which holds promising implications for controllable on-surface synthesis.

Substrate-directed chiral selectivity of molecular self-assembled and covalent structures

Controlling the synthesis of low-dimensional chiral nanostructures on solid surfaces has attracted tremendous interest in recent years. Herein, we report a study showing substrate-directed chiral selectivity of molecular self-assemblies and polymers. Depositing prochiral 2,6-dibromo-anthracene (DBA) on Ag(111) and Ag(100) held at 120 K leads to the formation of a homochiral self-assembled structure and racemic self-assembly, respectively. Thermal annealing induces the stepwise formation of organometallic and covalent structures on the two surfaces. Similar to the low-temperature case, high chiral selectivity is achieved on Ag(111), where organometallic chains and covalent polymers are composed of homochiral DBA molecules, while poor chiral selectivity is found on Ag(100). This difference is presumably attributed to the lattice symmetry and substrate reactivity, as supported by the contrast experiments carried out on Au(111) and Cu(111). This work provides guidance for the construction of chiral low-dimensional nanomaterials on surfaces.

On-Surface Reaction of 1,4-Dibromo-2,5-Diiodobenzene on Au(111) and Ag(100)

The on-surface reaction processes of 1,4-dibromo-2,5-diiodobenzene (C6H2Br2I2) on Au(111) and Ag(100) were systematically investigated under ultra-high vacuum conditions by using scanning tunneling microscopy. Deiodination underwent at RT on both surfaces with the formation of organometallic intermediates connected by C–Au–C and C–Ag–C linkages. In particular, partial deiodination on Au(111) resulted in self-assembled ordered structures of organometallic trans-trimers, which were converted into longer organometallic chains after complete deiodination at 100 °C. On Ag(100), complete deiodination gave rise to disordered molecular clusters at RT and organometallic intermediates were formed via the debromination process after annealing to 150 °C. Further annealing to higher temperatures resulted in covalent C–C bonded polyphenylene chains and finally disordered graphene nanostructures via cyclodehydrogenation. Our study provides fundamental comprehension of temperature-selective on-surface dehalogenation reactions of multi-halogen-substituted precursors for constructing designer covalently bonded networks.

On-Surface Synthesis and Evolution of Self-Assembled Poly(p-phenylene) Chains on Ag(111): A Joint Experimental and Theoretical Study.

The growth of controlled 1D carbon-based nanostructures on metal surfaces is a multistep process whose path, activation energies, and intermediate metastable states strongly depend on the employed substrate. Whereas this process has been extensively studied on gold, less work has been dedicated to silver surfaces, which have a rather different catalytic activity. In this work, we present an experimental and theoretical investigation of the growth of poly-p-phenylene (PPP) chains and subsequent narrow graphene ribbons starting from 4,4″-dibromo-p-terphenyl molecular precursors deposited at the silver surface. By combing scanning tunneling microscopy (STM) imaging and density functional theory (DFT) simulations, we describe the molecular morphology and organization at different steps of the growth process and we discuss the stability and conversion of the encountered species on the basis of calculated thermodynamic quantities. Unlike the case of gold, at the debromination step we observe the appearance of organometallic molecules and chains, which can be explained by their negative formation energy in the presence of a silver adatom reservoir. At the dehydrogenation temperature, the persistence of intercalated Br atoms hinders the formation of well-structured graphene ribbons, which are instead observed on gold, leading only to a partial lateral coupling of the PPP chains. We numerically derive very different activation energies for Br desorption from the Ag and Au surfaces, thereby confirming the importance of this process in defining the kinetics of the formation of molecular chains and graphene ribbons on different metal surfaces.

Initial Coupling and Reaction Progression of Directly Deposited Biradical Graphene Nanoribbon Monomers on Iodine-Passivated Versus Pristine Ag(111)

The development of widely applicable methods for the synthesis of C-C-bonded nanostructures on inert and insulating surfaces is a challenging yet rewarding milestone in the field of on-surface synthesis. This would enable studies of nearly unperturbed covalent nanostructures with unique electronic properties as graphene nanoribbons (GNR) and π-conjugated 2D polymers. The prevalent Ullmann-type couplings are almost exclusively carried out on metal surfaces to lower the temperature required for initial dehalogenation well below the desorption threshold. To overcome the necessity for the activation of monomers on the target surface, we employ a recently developed Radical Deposition Source (RaDeS) for the direct deposition of radicals onto inert surfaces for subsequent coupling by addition reactions. The radicals are generated en route by indirect deposition of halogenated precursors through a heated reactive tube, where the dehalogenation reaction proceeds. Here, we use the ditopic 6,11-diiodo-1,2,3,4-tetraphenyltriphenylene (DITTP) precursor that afforded chevron-like GNR on Au(111) via the usual two-staged reaction comprised of monomer-coupling into covalent polymers and subsequent formation of an extended GNR by intramolecular cyclodehydrogenation (CDH). As a model system for inert surfaces, we use Ag(111) passivated with a closed monolayer of chemisorbed iodine that behaves in an inert manner with respect to dehalogenation reactions and facilitates the progressive coupling of radicals into extended covalent structures. We deposit the DITTP-derived biradicals onto both iodine-passivated and pristine Ag(111) surfaces. While on the passivated surface, we directly observe the formation of covalent polymers, on pristine Ag(111) organometallic intermediates emerge instead. This has decisive consequences for the further progression of the reaction: heating the organometallic chain directly on Ag(111) results in complete desorption, whereas the covalent polymer on iodine-passivated Ag(111) can be transformed into the GNR. Yet, the respective CDH proceeds directly on Ag(111) after thermal desorption of the iodine passivation. Accordingly, future work is aimed at the further development of approaches for the complete synthesis of GNR on inert surfaces.

Crystal structure, DFT-study and NLO properties of the novel copper(I) nitrate π,σ-coordination compound based on 1-allyl-3-norbornan-thiourea

This work is directed toward the synthesis, structural characterization and NLO properties investigation of the novel copper(I) nitrate π,σ-coordination compound [Cu(Anor)(CH3CN)](NO3) (1) based on 1-allyl-3-norbornan-thiourea (Anor). In the crystal structure of both Anor and 1, the organic part is disordered because of the superposition of (2S)-exo and (2R)-exo enantiomers. The Anor ligand in 1 acts as a bridging ligand, connecting Cu(I) ions into the cationic coordination polymer {[Cu(Anor)(CH3CN)]+}n through η2-allyl group and the thiourea S atom. The H atoms of the –NH– groups in the Anor structure participate in NH···S hydrogen bonding and form an infinite hydrogen-bonded layer, while the same ligand groups in the organometallic chain of 1 are linked by bifurcated NH···O bonds to the two O atoms of the same NO3– anion. The second-order nonlinear optical properties for Anor and coordination compound 1 were studied at 1064 nm generated by a nanosecond pulsed Nd:YAG laser. The corresponding values of the average first-order NLO hyperpolarizabilities calculated by the DFT method and the B3LYP functional for the Anor ligand molecule and the cation fragment confirm the experimentally determined much higher second-harmonic generation efficiency for compound 1.

Symmetrical dehalogenation of 2, 7-dibromopyrene on Cu(1 1 1) with tunable intermediates and reaction paths

On-surface Ullmann coupling has attracted intensive attentions recently owing to its uniqueness at the tailor-made fabrication of conjugated nanostructures with high controllability. However, in-depth understanding of reaction mechanisms has not been fully established yet. Herein, symmetrical dehalogenation of 2, 7-dibromopyrene (Br2Py) on Cu(111) has been investigated in-detail via a combination of scanning tunneling microscopy, X-ray photoelectron spectroscopy, and density functional theory. First, deposition of Br2Py onto the precooled Cu(111) results in the self-assembly of intact precursors, while the formation of organometallic (OM) chains is induced on Cu(111) kept at room temperature (RT) after symmetrical dehalogenation due to the relatively high reactivity of Cu at RT. Further, it has been intriguingly discovered that symmetrically debrominated residues can be bound either to copper atoms from substrate leading the formation of close packed species, or to surface adatoms forming the Kagome-like pattern when Cu(111) is held at elevated temperatures during deposition. Nevertheless, covalent organic chains are constructed ultimately from different OM intermediates after stepwise annealing with the fingerprint of structural transition clearly identified. Based on these findings, our report provides appealing insights for the comprehensive understanding of surface Ullmann coupling mechanisms.

Oxygen-Induced 1D to 2D Transformation of On-Surface Organometallic Structures.

While surface-confined Ullmann-type coupling has been widely investigated for its potential to produce π-conjugated polymers with unique properties, the pathway of this reaction in the presence of adsorbed oxygen has yet to be explored. Here, the effect of oxygen adsorption between different steps of the polymerization reaction is studied, revealing an unexpected transformation of the 1D organometallic (OM) chains to 2D OM networks by annealing, rather than the 1D polymer obtained on pristine surfaces. Characterization by scanning tunneling microscopy and X-ray photoelectron spectroscopy indicates that the networks consist of OM segments stabilized by chemisorbed oxygen at the vertices of the segments, as supported by density functional theory calculations. Hexagonal 2D OM networks with different sizes on Cu(111) can be created using precursors with different length, either 4,4″-dibromo-p-terphenyl or 1,4-dibromobenzene (dBB), and square networks are obtained from dBB on Cu(100). The control over size and symmetry illustrates a versatile surface patterning technique, with potential applications in confined reactions and host-guest chemistry.

Reaction selectivity of homochiral versus heterochiral intermolecular reactions of prochiral terminal alkynes on surfaces

Controlling selectivity between homochiral and heterochiral reaction pathways on surfaces remains a great challenge. Here, competing reactions of a prochiral alkyne on Ag(111): two-dimensional (2D) homochiral Glaser coupling and heterochiral cross-coupling with a Bergman cyclization step have been examined. We demonstrate control strategies in steering the reactions between the homochiral and heterochiral pathways by tuning the precursor substituents and the kinetic parameters, as confirmed by high-resolution scanning probe microscopy (SPM). Control experiments and density functional theory (DFT) calculations reveal that the template effect of organometallic chains obtained under specific kinetic conditions enhances Glaser coupling between homochiral molecules. In contrast, for the reaction of free monomers, the kinetically favorable reaction pathway is the cross-coupling between two heterochiral molecules (one of them involving cyclization). This work demonstrates the application of kinetic control to steer chiral organic coupling pathways at surfaces.

On-Surface Synthesis of One-Dimensional Carbon-Based Nanostructures via C-X and C-H Activation Reactions.

The past decades have witnessed the emergence of low-dimensional carbon-based nanostructures owing to their unique properties and various subsequent applications. It is of fundamental importance to explore ways to achieve atomically precise fabrication of these interesting structures. The newly developed on-surface synthesis approach provides an efficient strategy for this challenging issue, demonstrating the potential of atomically precise preparation of low-dimensional nanostructures. Up to now, the formation of various surface nanostructures, especially carbon-based ones, such as graphene nanoribbons (GNRs), kinds of organic (organometallic) chains and films, have been achieved via on-surface synthesis strategy, in which in-depth understanding of the reaction mechanism has also been explored. This review article will provide a general overview on the formation of one-dimensional carbon-based nanostructures via on-surface synthesis method. In this review, only a part of the on-surface chemical reactions (specifically, C-X (X=Cl, Br, I) and C-H activation reactions) under ultra-high vacuum conditions will be covered.

Stepwise on-surface dissymmetric reaction to construct binodal organometallic network

Dissymmetric reactions, which enable differentiated functionalization of equivalent sites within one molecule, have many potential applications in synthetic chemistry and materials science, but they are very challenging to achieve. Here, the dissymmetric reaction of 1,4-dibromo-2,5-diethynylbenzene (2Br-DEB) on Ag(111) is realized by using a stepwise activation strategy, leading to an ordered two-dimensional organometallic network containing both alkynyl–silver–alkynyl and alkynyl–silver–phenyl nodes. Scanning tunneling microscopy and density functional theory calculations are employed to explore the stepwise conversion of 2Br-DEB, which starts from the H-passivation of one Br-substituted site at 300 K in accompaniment with an intermolecular reaction to form one-dimensional organometallic chains containing alkynyl–silver–alkynyl nodes. Afterwards, the other equivalent Br-substituted site undergoes metalation reaction at 320–450 K, resulting in transformation of the chains into the binodal networks. These findings exemplify the achievement of the dissymmetric reaction and its practical application for controlled fabrications of complicated yet ordered nanostructures on a surface.

In-situ formation of one-dimensional coordination polymers in molecular junctions

We demonstrate the bottom-up in-situ formation of organometallic oligomer chains at the single-molecule level. The chains are formed using the mechanically controllable break junction technique operated in a liquid environment, and consist of alternating isocyano-terminated benzene monomers coordinated to gold atoms. We show that the chaining process is critically determined by the surface density of molecules. In particular, we demonstrate that by reducing the local supply of molecules within the junction, either by lowering the molecular concentration or by adding side groups, the oligomerization process can be suppressed. Our experimental results are supported by ab-initio simulations, confirming that the isocyano terminating groups display a high tendency to form molecular chains, as a result of their high affinity for gold. Our findings open the road for the controlled formation of one-dimensional, single coordination-polymer chains as promising model systems of organometallic frameworks.

Hydrogenating an organometallic carbon chain: buten-yn-diyl (CH[double bond, length as m-dash]CHC[triple bond, length as m-dash]C) as a missing link.

The sequential reaction of [Ru(C[triple bond, length as m-dash]CC[triple bond, length as m-dash]CH)Cl(CO)2(PPh3)2] with [Ru(CO)2(PPh3)3], and N-chlorosuccinimide affords the binuclear tetracarbido complex [Ru2(μ-C[triple bond, length as m-dash]CC[triple bond, length as m-dash]C)Cl2(CO)4(PPh3)4]. This may be compared with the first example of a butenyndiyl bridged bimetallic complex [Ru2(μ-CH[double bond, length as m-dash]CHC[triple bond, length as m-dash]C)Cl2(CO)4(PPh3)4] which is obtained from the reaction of [Ru(C[triple bond, length as m-dash]CC[triple bond, length as m-dash]CH)Cl(CO)2(PPh3)2] with [RuHCl(CO)(PPh3)3] followed by carbonylation. Characterisational data are discussed with reference to constituent model complexes [Ru(C[triple bond, length as m-dash]CH)Cl(CO)2(PPh3)2] and [Ru(CH[double bond, length as m-dash]CH2)Cl(CO)2(PPh3)2] in addition to DFT analysis of the bonding in the complexes [Ru2(μ-L)Cl2(CO)4(PMe3)4] (L = C[triple bond, length as m-dash]C-C[triple bond, length as m-dash]C, CH[double bond, length as m-dash]CHC[triple bond, length as m-dash]C, CH[double bond, length as m-dash]CH-CH[double bond, length as m-dash]CH). A range of other tetracarbido complexes which may be prepared from [RuCl(C[triple bond, length as m-dash]CC[triple bond, length as m-dash]CH)(CO)2(PPh3)2] is also described and includes [RuAu(μ-C4)Cl(CO)3(PPh3)3], [RuIr(μ-C4)Cl(CO)3(PPh3)4], [RuIr(μ-C4)H(NCMe)(CO)3(PPh3)4]BF4, [RuIr(μ-C4)Cl(η2-O2)(CO)3(PPh3)4], [Ru2Hg(μ-C4)2Cl2(CO)4(PPh3)4], [Ru2Pt(μ-C4)2Cl2(CO)4(PPh3)6] and [Ru2(μ-C4)HCl(CO)4(PPh3)4].

On-surface synthesis of 2D COFs on Cu(111) via the formation of thermodynamically stable organometallic networks as the template.

Template-directed polymerization is an effective approach used to afford regular 2D covalent organic frameworks (COFs), thus the regularity of the template is crucial for the quality of the resulting 2D COFs. For the Ullmann reactions on Cu(111), aryl iodides and bromides are activated at low temperature to form organometallic C-Cu-C structures, which lead to kinetic trapping and irregular organometallic networks. Therefore, the subsequent annealing step can only afford irregular 2D COFs. In this manuscript, the molecule 4,4''-dibromo-5'-(4-chlorophenyl)-1,1':3',1''-terphenyl incorporated two Br terminals and one Cl terminal has been used to demonstrate different reactivities of a C-Cl bond and a C-Br bond via the hierarchical activation of the C-Br bond and the C-Cl bond on Cu(111). At room temperature, zigzag, armchair, and ring-like organometallic chains formed due to the activation of the C-Br bond to generate a C-Cu-C structure while C-Cl remained intact, illustrating that the C-Cl bond is more stable than C-Br. Further annealing at 433 K activated the C-Cl bond to produce regular organometallic networks as the thermodynamic product. Using the simpler molecule 1,3,5-tris(4-chlorophenyl)benzene as the precursor, the self-assembly of the intact molecules was observed on Cu(111) at 300 K without activation of the C-Cl bond. After annealing at 433 K, similar thermodynamically stable organometallic networks formed directly, which were used as a template to generate regular 2D COFs upon further annealing at 510 K.

On-Surface Polymerization of 1,6-Dibromo-3,8-diiodpyrene—A Comparative Study on Au(111) Versus Ag(111) by STM, XPS, and NEXAFS

The surface chemistry of 1,6-dibromo-3,8-diiodopyrene (Br2I2Py) is comparatively studied on Au(111) versus Ag(111) surfaces under ultrahigh vacuum conditions by a combination of high-resolution scanning tunneling microscopy (STM) and X-ray spectroscopy. The chemical state of the molecular networks, that is, the dehalogenation and the possible formation of organometallic intermediates, is assessed by X-ray photoelectron spectroscopy. In addition, pyrene tilt angles are quantified by carbon K-edge near edge X-ray absorption fine structure experiments. Upon room-temperature (RT) deposition of Br2I2Py onto Au(111), only partial deiodination was found, and STM revealed the coexistence of ordered arrangements of both intact Br2I2Py molecules and organometallic dimers as well as few larger aggregates. Further annealing to 100 °C triggered full deiodination followed by the formation of organometallic chains of otherwise still brominated molecules. By contrast, on Ag(111), iodine is fully and bromine is partly dis...

Organometallic ring vs. chain formation beyond kinetic control: steering their equilibrium in two-dimensional confinement.

Control over the competition between an organometallic hexamer macrocycle and oligomer chains formed from the non-alternant aromatic 1,3-dibromoazulene (DBAz) precursor has been achieved in surface-assisted synthesis on a copper(111) surface. In contrast to kinetic reaction control via the high-dilution principle, the ring formation is achieved here by thermodynamic control, which is based on two-dimensional (2D) confinement and reversible bonds.

On-Surface Synthesis of Porous Carbon Nanoribbons from Polymer Chains.

We demonstrate the on-surface synthesis of porous carbon nanoribbons on Ag(111) via a preprogrammed isomerization of conformationally flexible polymer chains followed by dehydrogenation reactions using thermal annealing. The carbon chains are fabricated by polymerization of prochiral 1,3,5-tris(3-bromophenyl)benzene (mTBPB) directly on the surface using an Ullmann-type reaction. At room temperature, mTBPB partially self-assembles in halogen-bonded 2D networks, which transform into organometallic chains and rings after debromination. The chain and ring formation is facilitated by conformational switching from a C3h to Cs symmetry of mTBPB via rotation of m-phenylene units. The high conformational selectivity toward Cs-conformers is templated by the twofold coordination to Ag adatoms. After thermally induced covalent-linking through aryl-aryl coupling, well-ordered nanoporous chains are created. Finally, the rotation of single phenylene units in combination with dehydrogenation cross-linking reactions within the polymer chains leads to the unexpected formation of porous carbon nanoribbons. We unveil the reaction mechanism in a low-temperature scanning tunneling microscopy study and demonstrate that the rotation of m-phenylene units is a powerful design tool to promote structural control in the synthesis of cyclic covalent organic nanostructures on metal surfaces.

Silver(i)-organic frameworks constructed from silver(i) 3,6-pyrazyldiethynide and 3,8-1,10-phenanthrolyldiethynide complexes.

Two diynes bearing functional groups with different binding modes, 3,6-diethynylpyrazine (H2L1) and 3,8-diethynyl-1,10-phenanthroline (H2L2), were utilized as ligands to synthesize two new organometallic units, Ag2L1·3AgNO3 (1) and Ag2L2·6AgNO3 (2), in order to investigate the effect of the bridging and chelating modes of the ligands on the structures of networks constructed from silver-ethynide compounds. Structural studies show that in 1, silver-ethynide cluster units aggregate to form chair-like organometallic slides through Ag-N coordination bonds. These slides are linked through argentophilic interaction to generate novel 2D ladder-like layers, and are further bridged by nitrate anions to afford a 3D network in the solid state. It is observed that all the Ag ions in one layer interact to afford a 2D silver network. However, in 2, the silver-ethynide cluster units only interact to generate unique sine wave-like organometallic chains through argentophilic interaction, which are further connected by nitrate anions to form a 3D network. In the solid state, both 1 and 2 are luminescent at room temperature.

Effect of terminal substituents on self-assembly behavior of porphyrin molecules on Ag(110)

Effect of terminal substituents on self-assembly behavior of porphyrin molecules has been studied with three derivatives modified with distinctly different substituents, 5,15-(di-3,5-di-tert-butylphenyl) porphyrin, 5,15-(dimesityl) porphyrin, and 5,15-(di-4-ethynylphenyl) porphyrin. Scanning tunneling microscopy and density functional calculations reveal that 5,15-(di-3,5-di-tert-butylphenyl) porphyrin, 5,15-(dimesityl) porphyrin, and 5,15-(di-4-ethynylphenyl) porphyrin spontaneously give different ordered structures on Ag(110) surface both at room temperature and after annealing. It is clear that the tert-butylphenyl substituent could increase the intermolecular van der Waals interactions to form stable network structure under condition of thermal activation, whereas the mesityl substituent plays an essential role in the formation of rigid chain structure as a result of the CH–π interactions between the mesityl groups of molecule enantiomers. Moreover, the ethynylphenyl substituent could induce metal atoms to coordinate with ethynyl to form organometallic chains. Copyright © 2016 John Wiley & Sons, Ltd.