Movement Of Organisms Research Articles

An intelligent recursive feature reduction methods for efficient classification of medical blogs

Nowadays people express themselvesin the form of weblogs attracting and benefiting users in their perspective. Blogs are maintained by individual users with specific software reporting activities that removing all possible barriers and developing learning blogs. Blogs together forms a linked community as blogosphere. Procuring information from these blogs has become very tough due to the intense growth of blogs. The proposed system classifies and compiles the blog ensuring appropriate chemo taxis analysis and reporting. These data preparation and analysis helps the healthcare organizations to solve many health related problems and identify new improvements. The movement of organism to chemical stimulus is recognized in chemo taxis. Chemo taxis is subverted in cancer phases. Weblogs not only manage and organize these data but also reduces the time required for data gathering, acquisition, analysis and reporting.

Reconstructing an incomparable organism: the Chalicothere in nineteenth and early-twentieth century palaeontology.

Palaeontology developed as a field dependent upon comparison. Not only did reconstructing the fragmentary records of fossil organisms and placing them within taxonomic systems and evolutionary lineages require detailed anatomical comparisons with living and fossil animals, but the field also required thinking in terms of behavioural, biological and ecological analogies with modern organisms to understand how prehistoric animals lived and behaved. Yet palaeontological material often worked against making easy linkages, bringing a sense of mystery and doubt. This paper will look at an animal whose study exemplified these problems: the Chalicothere. Increasingly (although not unproblematically) recognized as a specific type from finds across North America and Eurasia from the early nineteenth century onwards, these prehistoric mammals showed short back legs terminating in pawed feet, long front limbs ending in sharp claws, a long flexible neck, and herbivorous grinding teeth. The Chalicothere became a significant organism within palaeontological studies, as the unexpected mix of characters made it a textbook example against the Cuvierian notion of "correlation of parts," while explaining how the animal moved, fed and behaved became puzzling. However, rather than prevent comparisons, these actually led to comparative analogies becoming flexible and varied, with different forms of comparison being made with varying methods and degrees of confidence, and with the anatomy, movement and behaviour of giraffes, bears, horses, anteaters, primates and other organisms all serving at various points as potential models for different aspects of the animal. This paper will examine some of the attempts to reconstruct and define the Chalicotheres across a long timescale, using this to show how multiple comparisons and analogies could be deployed in a reconstructive and evolutionary science like palaeontology, and illustrate some of the limits and tensions in comparative methods, as they were used to reconstruct organisms which were thought to be incomparable to any modern animal.

Fine-scale movement and habitat use of a prairie stream fish assemblage.

Measuring an organism's movement and habitat use is highly dependent on the spatial and temporal scale of the study, with most studies measuring distributions once a day or at less frequent intervals. Yet, to fully understand the rates of intra- and interspecific encounters among individuals, observations at finer spatial and temporal scales might be necessary. We used passive integrated transponder tags and antenna arrays to continuously monitor habitat use and vagility of three stream minnows; southern redbelly dace Chrosomus erythrogaster, central stoneroller Campostoma anomalum, and creek chub Semotilus atromaculatus, among and within pools of an intermittent stream. Most fish remained in the pool where they were caught and released, or returned after emigrating from the pool. Despite largely remaining within the release pool, distribution among four microhabitats differed significantly over six, 4-h time periods for all three species. Vagility, the summed distance moved among antennas, differed significantly among species. Individual vagility (mday-1) increased significantly with body length for stoneroller and chub, but not dace. Some individuals moved as much as 110mday-1 within the pool, showcasing extensive movement at fine scales. Finally, we found no evidence that feeding activity changed as a result of differential habitat use over a 24-h period. Our findings indicate considerable variation in habitat use and movement occurs among species over a 24-h period. This suggests ecologists can broaden the interpretation of processes influencing community structure (e.g., resource partitioning, avoidance of predators) by quantifying species distributions across a range of spatial and temporal scales.

Habitat Connectivity of Fish in Temperate Shallow-Water Seascapes

Movements of organisms comprise a fundamental aspect of coastal habitat connectivity. Determining the distribution and co-existence of habitat specialists and generalists in shallow-water seascapes ...

Spatial and temporal variation in food web structure of an impounded river in Anatolia

Dams interrupt the longitudinal connectivity of rivers by impeding the movement of water, sediments and organisms, which, in turn, could affect aquatic biodiversity and food web ecology. Using stable isotope analysis, we examined spatiotemporal variation in food web structure at four sites in the upper Yeşilırmak River, Anatolia Peninsula, Turkey, in relation to environmental parameters and a dam. It was apparent that the dam created discontinuity in the longitudinal fluvial gradient of fish species richness, with more species observed at upstream sites. Fish assemblages from different sites and seasons occupied distinct areas of isotopic space. Isotopic niche space, trophic diversity, variation in δ13C of basal resources and assemblage redundancy were all higher for the fish assemblage at the site downstream from the dam compared with the site above the dam, a possible indication of greater interspecific dietary variation. Food chain length (the range in δ15N) was lower at the downstream site, possibly resulting from a greater tendency towards omnivory. The findings strongly suggest that the dam affects not only environmental conditions and fish diversity, but also trophic ecology. The results of the present study emphasise the need for research to assess potential effects of new dams in Anatolia on aquatic communities and ecosystem dynamics in rivers.

Seed dispersal by rivers in tropical dry forests: An overlooked process in tropical central Mexico

AbstractAimsRivers are important corridors for the movement, migration and dispersal of aquatic organisms, including seeds from riparian plants. Although tropical dry forests (TDF) are among the most extensive and floristically rich ecosystems of tropical habitats, and the most globally endangered ecosystem, less attention has been given to riparian corridors within this ecosystem. Although most TDFs manifest peak seed dispersal during dry seasons, we hypothesized that riparian corridors may show a dispersal peak during the rainy season, due to an anticipated ‘sweep or drag effect’, resulting from river overflow and bank erosion. Our main aims were to investigate whether there were any differences in the seed communities transported by the river to sites in rainy as opposed to dry seasons, and to evaluate any possible relationship between the riparian seed community and river flow.LocationAmacuzac River, drainage of the Balsas basin, State of Morelos, Mexico.MethodsTo evaluate the above assumption, we associated Amacuzac River flow with the number of species and seeds dispersed by water. We also characterized and evaluated differences between seed communities transported by the river during the rainy and dry seasons, and between four different sites located along the river. We used univariate and ordination NMDS techniques to evaluate patterns between seasons at the community level.ResultsForty‐five plant species were identified from 909 seeds collected from the river. The composition of riparian seed communities was markedly different between seasons but not between sites. Seed abundances were significantly higher in the rainy than in the dry season and varied between sites. Seed species diversity in the river (H’ = 1.6–1.9) showed no significant differences between seasons or sites, but species assemblages and dominance varied according to season. Ordination techniques and subsequent fitting analyses showed that seed species composition was positively associated with river flow.ConclusionsSeed dispersal patterns generated by rivers are significant mechanisms for structuring the composition and distribution of the riparian plant community in Mexican TDF. Varying species assemblages and seed abundance dispersed by the river throughout the year is a relevant and until now unknown consequence that may affect the dynamics and composition of riparian plant communities in this region. This study initiative will promote new avenues of research regarding plant establishment and succession.

Fractional Patlak--Keller--Segel Equations for Chemotactic Superdiffusion

The long range movement of certain organisms in the presence of a chemoattractant can be governed by long distance runs, according to an approximate Levy distribution. This article clarifies the form of biologically relevant model equations: We derive Patlak-Keller-Segel-like equations involving nonlocal, fractional Laplacians from a microscopic model for cell movement. Starting from a power-law distribution of run times, we derive a kinetic equation in which the collision term takes into account the long range behaviour of the individuals. A fractional chemotactic equation is obtained in a biologically relevant regime. Apart from chemotaxis, our work has implications for biological diffusion in numerous processes.

Dynamics of populations with individual variation in dispersal on bounded domains

ABSTRACTMost classical models for the movement of organisms assume that all individuals have the same patterns and rates of movement (for example, diffusion with a fixed diffusion coefficient) but there is empirical evidence that movement rates and patterns may vary among different individuals. A simple way to capture variation in dispersal that has been suggested in the ecological literature is to allow individuals to switch between two distinct dispersal modes. We study models for populations whose members can switch between two different nonzero rates of diffusion and whose local population dynamics are subject to density dependence of logistic type. The resulting models are reaction–diffusion systems that can be cooperative at some population densities and competitive at others. We assume that the focal population inhabits a bounded region and study how its overall dynamics depend on the parameters describing switching rates and local population dynamics. (Traveling waves and spread rates have been studied for similar models in the context of biological invasions.) The analytic methods include ideas and results from reaction–diffusion theory, semi-dynamical systems, and bifurcation/continuation theory.

Infections on the move: how transient phases of host movement influence disease spread.

Animal movement impacts the spread of human and wildlife diseases, and there is significant interest in understanding the role of migrations, biological invasions and other wildlife movements in spatial infection dynamics. However, the influence of processes acting on infections during transient phases of host movement is poorly understood. We propose a conceptual framework that explicitly considers infection dynamics during transient phases of host movement to better predict infection spread through spatial host networks. Accounting for host transient movement captures key processes that occur while hosts move between locations, which together determine the rate at which hosts spread infections through networks. We review theoretical and empirical studies of host movement and infection spread, highlighting the multiple factors that impact the infection status of hosts. We then outline characteristics of hosts, parasites and the environment that influence these dynamics. Recent technological advances provide disease ecologists unprecedented ability to track the fine-scale movement of organisms. These, in conjunction with experimental testing of the factors driving infection dynamics during host movement, can inform models of infection spread based on constituent biological processes.

How do invasive species travel to and through urban environments?

Globalisation has resulted in the movement of organisms outside their natural range, often with negative ecological and economic consequences. As cities are hubs of anthropogenic activities, with both highly transformed and disturbed environments, these areas are often the first point of entry for alien species. We compiled a global database of cities with more than one million inhabitants that data had on alien species occurrence. We then identified the most prominent pathways of introduction and vectors of spread of alien species in these cities. Most species were intentionally introduced to cities and were released or escaped from confinement. The majority of alien species then spread within cities through natural means (primarily unaided dispersal). Pathway prominence varied across the taxonomic groups of alien species: the most prominent pathway for plants and vertebrates was the escape pathway; for invertebrates the stowaway and contaminant pathways were most likely to facilitate introductions. For some organisms, pathway prominence varied with the geographical and climatic characteristics of the city. The characteristics of the cities also influenced the prominence of vectors of spread for alien species. Preventing the natural spread of alien species within cities, and into adjacent natural environments will be, at best, difficult. To prevent invasions, both the intentional and unintentional introduction of potentially harmful alien species to cities must be prevented. The pathways of introduction and vectors of spread identified here should be prioritised for management.

Geomorphic influence on intraspecific genetic differentiation and diversity along hyporheic corridors

Abstract The hyporheic zone of rivers potentially acts as a dispersal corridor for groundwater organisms because it provides a spatially continuous interstitial habitat between isolated aquifers. Yet, the degree to which it can facilitate the movement of organisms has been hypothesized to vary in response to change in sediment regime, which determines channel morphology. In this study, we used microsatellite markers to test for a relationship between the genetic structure and diversity of the minute interstitial isopod Proasellus walteri and channel morphology along three nearby hyporheic corridors differing widely in their sediment regime. We predicted that genetic diversity would decrease and genetic structuring would increase as sediment supply‐limited channels would become prominent features in the river corridor. The reason is that such channels have fewer and less suitable sedimentary habitats for migration because they lack large depositional bedforms such as gravel bars. Using genotypic data from seven microsatellite loci for a total of 713 individuals distributed among 25 demes, we found that demes had on average more alleles and were less differentiated in the river showing the most extensive alluvial deposits and shortest length of sediment supply‐limited channels. Population clusters were also of greater size, reaching up to 30 km in length. The longitudinal pattern of genetic differentiation in this sediment‐rich river was best explained by hydrologic distance and the longitudinal pattern of allelic richness was bell‐shaped, as expected under a stepping‐stone model with symmetrical migration. The length of sediment supply‐channels was more important than hydrologic distance in explaining the longitudinal distribution of genetic differentiation in the two other corridors facing a sediment shortage. Allelic richness decreased monotonically upstream in the most sediment‐poor river. This correlates with the expansion further downstream of sediment supply‐limited channels in this river, which is likely to decrease animal movement and hence gene flow among demes. This study provides the first evidence that the degree to which the hyporheic zone facilitates the movement of groundwater organisms varies greatly among rivers of contrasted geomorphology. Extending the application of riverscape genetics across a range of interstitial taxa and geomorphic settings holds much promise for assessing the contribution of the hyporheic zone to the dispersal of groundwater organisms.

Muscle length matters: new insights into the neural control of lengthening muscle actions of the knee extensors.

Every movement of the human organism requires an interaction of the central nervous system and skeletal muscles to generate muscle actions and thereby joint torques. This article is protected by copyright. All rights reserved

Calaxin establishes basal body orientation and coordinates movement of monocilia in sea urchin embryos

Through their coordinated alignment and beating, motile cilia generate directional fluid flow and organismal movement. While the mechanisms used by multiciliated epithelial tissues to achieve this coordination have been widely studied, much less is known about regulation of monociliated tissues such as those found in the vertebrate node and swimming planktonic larvae. Here, we show that a calcium sensor protein associated with outer arm dynein, calaxin, is a critical regulator for the coordinated movements of monocilia. Knockdown of calaxin gene in sea urchin embryos results in uncoordinated ciliary beating and defective directional movement of the embryos, but no apparent abnormality in axoneme ultrastructure. Examination of the beating cycle of individual calaxin-deficient cilia revealed a marked effect on the waveform and spatial range of ciliary bending. These findings indicate that calaxin-mediated regulation of ciliary beating is responsible for proper basal body orientation and ciliary alignment in fields of monociliated cells.

The emergent physics of animal locomotion

Many physiological systems must work together to enable movement in animals and other organisms. Neuromechanics explores how those systems interact with each other and the environment.

Sex, life history and morphology drive individual variation in flight performance of an insect parasitoid

1. The movement of organisms can be driven by multiple factors and has implications for fitness and the spatial distribution of populations. Insects spend a large proportion of their adult lives foraging by flying for resources; however, their capability and motivation to move can vary across individuals.2. The aims of this study were to examine interindividual and sex differences in flight performance and flight characteristics, using a flight mill bioassay, in Megarhyssa nortoni (Hymenoptera; Ichneumonidae), a parasitoid of the invasive woodwasp Sirex noctilio (Hymenoptera: Siricidae), one of the most important pests of pine afforestation worldwide. We also assessed the influence of morphological traits in combination with sex on flight and explored the cost of flight on longevity and mass loss.3. The results show a difference between sexes in flight characteristics and performance. Females show greater total distance flown than males, and have a better capacity to undergo sustained flight. Sexual size dimorphism was also found and it was noted that size positively affects distances travelled. Females have a longer life span than males, yet no differences were noted in longevity within sex between individuals that did not fly and those that flew. Age did not influence flight performance of females or impacted on post‐flight longevity. Females lost less body mass than males even after flying longer distances.4. These results suggest that sex‐specific behaviours probably govern flight abilities together with (and not only because of) morphological traits. The paper discusses sex‐specific life‐history strategies in parasitoids and their implications for biocontrol programmes.

Ecohydrological interfaces as hot spots of ecosystem processes

AbstractThe movement of water, matter, organisms, and energy can be altered substantially at ecohydrological interfaces, the dynamic transition zones that often develop within ecotones or boundaries between adjacent ecosystems. Interdisciplinary research over the last two decades has indicated that ecohydrological interfaces are often “hot spots” of ecological, biogeochemical, and hydrological processes and may provide refuge for biota during extreme events. Ecohydrological interfaces can have significant impact on global hydrological and biogeochemical cycles, biodiversity, pollutant removal, and ecosystem resilience to disturbance. The organizational principles (i.e., the drivers and controls) of spatially and temporally variable processes at ecohydrological interfaces are poorly understood and require the integrated analysis of hydrological, biogeochemical, and ecological processes. Our rudimentary understanding of the interactions between different drivers and controls critically limits our ability to predict complex system responses to change. In this paper, we explore similarities and contrasts in the functioning of diverse freshwater ecohydrological interfaces across spatial and temporal scales. We use this comparison to develop an integrated, interdisciplinary framework, including a roadmap for analyzing ecohydrological processes and their interactions in ecosystems. We argue that, in order to fully account for their nonlinear process dynamics, ecohydrological interfaces need to be conceptualized as unique, spatially and temporally dynamic entities, which represents a step change from their current representation as boundary conditions at investigated ecosystems.

Demographic stochasticity and resource autocorrelation control biological invasions in heterogeneous landscapes

Mounting theoretical evidence suggests that demographic stochasticity, environmental heterogeneity and biased movement of organisms individually affect the dynamics of biological invasions and range expansions. Studies of species spread in heterogeneous landscapes have traditionally characterized invasion velocities as functions of the mean resource density throughout the landscape, thus neglecting higher‐order moments of the spatial resource distribution. Here, we show theoretically that different spatial arrangements of resources lead to different spread velocities even if the mean resource density throughout the landscape is kept constant. Specifically, we find that increasing the resource autocorrelation length causes a reduction in the speed of species spread. The model shows that demographic stochasticity plays a key role in the slowdown, which is strengthened when individuals can actively move towards resources. We then experimentally corroborated the theoretically predicted reduction in propagation speed in microcosm experiments with the protist Euglena gracilis by comparing spread in landscapes with different resource autocorrelation lengths. Our work identifies the resource autocorrelation length as a key modulator and a simple measure of landscape susceptibility to biological invasions, which needs to be considered for predicting invasion dynamics within naturally heterogeneous environmental corridors.

Anomalous diffusion on the servosphere: A potential tool for detecting inherent organismal movement patterns.

Tracking animal movements such as walking is an essential task for understanding how and why animals move in an environment and respond to external stimuli. Different methods that implemented image analysis and a data logger such as GPS have been used in laboratory experiments and in field studies, respectively. Recently, animal movement patterns without stimuli have attracted an increasing attention in search for common innate characteristics underlying all of their movements. However, it is difficult to track the movements in a vast and homogeneous environment without stimuli because of space constraints in laboratories or environmental heterogeneity in the field, hindering our understanding of inherent movement patterns. Here, we applied an omnidirectional treadmill mechanism, or a servosphere, as a tool for tracking two-dimensional movements of small animals that can provide both a homogenous environment and a virtual infinite space for walking. To validate the use of our tracking system for assessment of the free-walking behavior, we compared walking patterns of individual pillbugs (Armadillidium vulgare) on the servosphere with that in two types of experimental flat arenas. Our results revealed that the walking patterns on the servosphere showed similar diffusive characteristics to those observed in the large arena simulating an open space, and we demonstrated that our mechanism provides more robust measurements of diffusive properties compared to a small arena with enclosure. Moreover, we showed that anomalous diffusion properties, including Lévy walk, can be detected from the free-walking behavior on our tracking system. Thus, our novel tracking system is useful to measure inherent movement patterns, which will contribute to the studies of movement ecology, ethology, and behavioral sciences.

Concurrent passive and active acoustic observations of high-latitude shallow foraging sperm whales (Physeter macrocephalus) and mesopelagic prey layer

Using echosounder and hydrophone data from the Lofoten-Vesterålen Cabled Ocean Observatory (LoVe, N 68 °54.474’, E 15 °23.145’, 258 m depth) collected in 2015, we are able to concurrently quantify sperm whale (Physeter macrocephalus) shallow foraging behavior and the behavior of the mesopelagic prey layer. Click rate and type was detected by the passive acoustics while active acoustics monitored the distribution and vertical and horizontal movement of the prey organisms in the water column. In one instance a diving sperm whale was also detected by the active acoustics allowing TS measurements and estimation of diving speed and angle. Additional data such as ocean current and proximity of vessels, in addition to vessel noise measurements, further allowed us to examine potential links between oceanographic conditions and noise on sperm whale behavior and foraging and the presence of prey and whales. The results demonstrate the additional information obtained by combining data from active and passive acoustic sensors. The first part of the LoVe cross-disciplinary ocean observatory was established in 2013, and the extension is planned for 2017/2018 covering the Norwegian shelf to approximately 2500 m depth. This will further expand the observatories capabilities for underwater acoustic monitoring and targeted scientific studies.

Simulating individual-based movement in dynamic environments

The accuracy of spatially-explicit individual-based models (IBMs) often depends on the realistic simulation of the movement of organisms, which is especially challenging when movement cues (e.g., environmental conditions; prey and predator abundances) vary in time and space. A number of approaches or sub-models have been developed for simulating movement in IBMs. We evaluated four movement sub-models (restricted-area search, kinesis, event-based, and run and tumble) in a spatially-explicit cohort IBM in which the prey and predators were both dynamic (varying across cells and over time) and responsive to the dynamics of the cohort individuals. Movement, growth, and mortality were simulated every 25min for 30 12-h days (single generation) on a 2.7×2.7km2 grid with 625m2 cells, and egg production was calculated based on weight and survival of individuals at the end of 30days. We based the cohort model on small pelagic coastal fish, and the prey was based on zooplankton and the predators based on a typical piscivorous fish. Movement sub-models were calibrated with a genetic algorithm in dynamic and static versions of the prey and predator-defined environments. Prey and predator fields were fixed in the static environment; in the dynamic environment, prey density was reduced based on consumption and predators actively sought out cohort individuals. Static-trained sub-models were then tested in the dynamic environments and vice versa. The four movement sub-models were successfully trained and performed reasonably well in terms of egg production (a measure of individual fitness) when trained and tested in the same type of environment. However, the type of environment affected calibration success, and static-trained models did not perform well when tested in dynamic environments because cohort individuals moved in response to both prey and predator cues rather than primarily avoiding fixed-in-space high mortality cells. Use of movement sub-models in IBMs should carefully consider how the conditions assumed for calibration relates to the dynamic conditions the model will be used to address.