Present limitations on using satellite imagery to derive accurate chlorophyll concentrations and phytoplankton functional types arise from insufficient in situ measurements to validate the satellite reflectance, Rrs0+. We installed a set of hyperspectral radiometers with autonomous solar tracking capability, collectively named SAS Solar Tracker (Satlantic Inc./Sea-Bird), on top of a commercial ferry, to measure the in situ reflectance as the ferry crosses the Salish Sea, Canada. We describe the SAS Solar Tracker installation procedure, which enables a clear view of the sea surface and minimizes the interference caused by the ship superstructure. Corrections for residual ship superstructure perturbations and non-nadir-viewing geometry are applied during data processing to ensure optimal data quality. It is found that the ship superstructure perturbation correction decreased the overall Rrs0+ by 0.00055 sr−1, based on a black-pixel assumption for the infrared band of the lowest acquired turbid water. The BRDF correction using the inherent optical properties approach lowered the spectral signal by ∼5–10%, depending on the wavelength. Data quality was evaluated according to a quality assurance method considering spectral shape similarity, and ∼92% of the acquired reflectance data matched well against the global database, indicating high quality.