The aim of this work is to study correlations of the frequencies of SSR markers (Inter Simple Sequence Repeat) and live weight of domestic reindeer. A spectrum of 4 amplicons with a fragment size of 240– 330 bp, 350–430 bp, 440–520 bp and 520–570 bp can be considered specific for the Chukchi breed, since deer of all populations is most common. The variability of SSR markers in populations indicates the similarity between them in most allelic frequencies. This confirms the common origin, economic and breeding use of deer of the Chukchi breed. Loci No. 1, 3, 4, 5, 6 are positively associated with each other, while with other loci they have the opposite correlation direction of communication. For all sex and age groups of deer, loci no. 3 (240– 330 bp), no. 4 (330–350) and no. 5 (350–430) are characterized by a moderately crowded inverse relationship with an indicator of live weight. The average value of the correlation coefficient for these loci was equal to: -0.603; -0.648 and -0.646, respectively. By loci No. 6 (440–520 bp), No. 7 (520–570) and No. 8 (650–690), on the contrary, a direct in action and medium in magnitude connection was noted, the correlation coefficient for these loci an average of 0.266; 0.597 and 0.559, respectively. The data obtained allow us to identify trends in the correlation conjugacy of ISSR markers and live weight, and to reduce the search space for genes whose polymorphism is associated with live weight variability in Chukchi populations. Using the analysis of variance, a reliable influence of the «farm» factor (ecology + farm conditions) on the frequency of occurrence of a DNA fragment with an average value of the influence force ηx² = 65,9% was established. The correlation ratio ηx= 0.811 confirms the presence of a close relationship between the attributes.
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