The Easternmost Mediterranean is a transition region from the ocean to the continent where the spreading and collision zones of the lithospheric plates join. The methodology of paleomagnetic mapping of the transition zones is based on combining geological and geophysical techniques for continental and oceanic platforms: magnetic data interpretation, paleomagnetic reconstructions, results of magnetized rock radiometric dating, satellite data analysis, tectonic–structural reconstructions, biogeographical studies, and utilization of different geophysical survey results. The satellite-derived gravity map reflects practically all significant tectonic units in the region, which assists us in the supposed paleomagnetic mapping. The satellite-derived and aeromagnetic maps with the tectonic features and the map of Curie discontinuity of Israel indicate the complexity of this region. Advanced magnetic data analysis supported by paleomagnetic data attraction and other geological–geophysical methods allowed the revealing of the block of oceanic crust with the Kiama paleomagnetic zone relating to the Early Permian age. A narrow reversely magnetized Earth crust block was revealed in the Lower Galilee. Some examples of advanced magnetic anomaly analysis are presented for several areas where the magnetization vector inclination is other than the modern direction: the Sea of Galilee, Carmel, Rosh-Ha-Ayin, Malqishon, and Hebron. In Israeli land, for the combined paleomagnetic mapping, the well-studied using paleomagnetic and radiometric methods (as well as tectonic–structural) areas were selected: (1) Makhtesh Ramon, (2) the Sea of Galilee with the adjoining zones, (3) Carmel, (4) Hula, and (5) Hermon. It is shown that the regional analysis of paleomagnetic data distribution played an essential role in detecting the influence of the recently recognized counterclockwise rotating mantle structure on the near-surface layers.