Niche Occupation Research Articles

Chemosensation and Evolution of Drosophila Host Plant Selection

The ability to respond to chemosensory cues is critical for survival of most organisms. Among insects, Drosophila melanogaster has the best characterized olfactory system, and the availability of genome sequences of 30 Drosophila species provides an ideal scenario for studies on evolution of chemosensation. Gene duplications of chemoreceptor genes allow for functional diversification of the rapidly evolving chemoreceptor repertoire. Although some species of the genus Drosophila are generalists for host plant selection, rapid evolution of olfactory receptors, gustatory receptors, odorant-binding proteins, and cytochrome P450s has enabled diverse host specializations of different members of the genus. Here, I review diversification of the chemoreceptor repertoire among members of the genus Drosophila along with co-evolution of detoxification mechanisms that may have enabled occupation of diverse host plant ecological niches.

Stygofaunal community trends along varied rainfall conditions: Deciphering ecological niche dynamics of a shallow calcrete in Western Australia

AbstractGroundwaters host highly adapted fauna, known as stygofauna, which play a key role in maintaining the functional integrity of subterranean ecosystems. Stygofaunal niche studies provide insights into the ecological dynamics shaping the delicate balance between the hydrological conditions and community diversity patterns. This work aims to unravel the ecological trends of a calcrete stygofaunal community, with special focus on niche dynamics through the Outlying Mean Index analysis (OMI) and additional calculation of Within Outlying Mean Indexes (WitOMI), under three rainfall regimes. Temperature and pH changed significantly among different rainfall conditions (P < .001), and together with salinity were the most influential drivers in shaping stygofaunal assemblages. These environmental conditions, linked with nutrient fluctuations in the groundwater, constrained changes in niche occupation for water mites, two species of beetles and juvenile amphipods (OMI analysis, P < .05). The WitOMI analysis revealed differential subniche breadths linked with taxa‐specific adaptations after different rainfall conditions. Our results indicate that stygofaunal niches are closely linked to the hydrodynamic conditions influenced by different rainfall regimes. Further long‐term investigations, incorporating broader ecological perspectives, will help to understand the impacts associated with climate change and anthropogenic pressures on one of the most threatened ecosystems in the world.

A tale of four bears: Environmental signal on the phylogeographical patterns within the extant Ursus species

AbstractAimAssessing the relevance of niche evolution in the diversification patterns and geographical distribution of species driven by climate remains a challenge. We apply an integrative approach to evaluate the role of the environment on the phylogeography of bear species, incorporating fossil data to characterize the changes in the ecological niche through time. We evaluate our approach with the four extant species of bears within Ursus, the best represented taxon in the fossil record of the family Ursidae.LocationEurasia and North America.TaxaAsian black bear, Ursus thibetanus; American black bear, U. americanus; Brown bear, U. arctos; and Polar bear, U. maritimus.MethodsWe built a genetic and a geographical database from all published mitochondrial DNA sequences and of species occurrence records. We defined the most significant climatic variables based on each species ecological realm using correlation matrices, and characterized the ecological niches and existing environmental conditions with ellipsoid models. We inferred their current and Last Glacial Maximum (LGM) ecological niche modellings (ENMs) and compared the results with the fossil record. We estimated the times of divergence (d‐loop sequences) of lineages and applied a phyloclimatespace approach to discern the phylogeographical patterns along each species’ ecological space.ResultsEcological niche modelling showed wider niches for U. thibetanus and U. americanus encompassing higher temperature and precipitation, while U. arctos and U. maritimus showed an opposite pattern. LGM models were consistent with the fossil record, predicting 55%–89% of the fossil occurrences (within their suitability areas). The phyloclimatespace revealed different degrees of environmental signal in the lineages’ phylogeographical patterns and ecological trajectories associated with LGM climatic conditions. Results indicated habitat tracking and ecological expansion since the LGM towards more extreme precipitation and temperature conditions for three species, except U. maritimus that showed ecological niche reduction.Main ConclusionsIncorporating fossil information from the LGM improved our characterization and interpretation of ecological models, by enabling definition of the limits of the climatic conditions explored by the species in the past. Our approach also provided insights about the existing set of environmental conditions shaping the ecological niche divergence of Ursus bears. We were able to depict key features of the lineages’ evolutionary history, ecology and distribution, revealing the dynamics of niche occupation and the environmental signal on the phylogeographical patterns of Ursus.

Impacts of spatial and environmental differentiation on early Palaeozoic marine biodiversity.

The unprecedented diversifications in the fossil record of the early Palaeozoic (541-419 million years ago) increased both within-sample (α) and global (γ) diversity, generating considerable ecological complexity. Faunal difference (β diversity), including spatial heterogeneity, is thought to have played a major role in early Palaeozoic marine diversification, although α diversity is the major determinant of γ diversity through the Phanerozoic. Drivers for this Phanerozoic shift from β to α diversity are not yet resolved. Here, we evaluate the impacts of environmental and faunal heterogeneity on diversity patterns using a global spatial grid. We present early Palaeozoic genus-level α, β and γ diversity curves for molluscs, brachiopods, trilobites and echinoderms and compare them with measures of spatial lithological heterogeneity, which is our proxy for environmental heterogeneity. We find that α and β diversity are associated with increased lithological heterogeneity, and that β diversity declines over time while α increases. We suggest that the enhanced dispersal of marine taxa from the Middle Ordovician onwards facilitated increases in α diversity by encouraging the occupation of narrow niches and increasing the prevalence of transient species, simultaneously reducing spatial β diversity. This may have contributed to a shift from β to α diversity as the major determinant of γ diversity increase over this critical evolutionary interval.

Exploring the relation between remotely sensed vertical canopy structure and tree species diversity in Gabon

Mapping tree species diversity is increasingly important in the face of environmental change and biodiversity conservation. We explore a potential way of mapping this diversity by relating forest structure to tree species diversity in Gabon. First, we test the relation between canopy height, as a proxy for niche volume, and tree species diversity. Then, we test the relation between vertical canopy structure, as a proxy for vertical niche occupation, and tree species diversity. We use large footprint full-waveform airborne lidar data collected across four study sites in Gabon (Lopé, Mabounié, Mondah, and Rabi) in combination with in situ estimates of species richness (S) and Shannon diversity (H′). Linear models using canopy height explained 44% and 43% of the variation in S and H′ at the 0.25 ha resolution. Linear models using canopy height and the plant area volume density profile explained 71% of this variation. We demonstrate applications of these models by mapping S and H′ in Mondah using a simulated GEDI-TanDEM-X fusion height product, across the four sites using wall-to-wall airborne lidar data products, and across and between the study sites using ICESat lidar waveforms. The modeling results are encouraging in the context of developing pan-tropical structure-diversity models applicable to data from current and upcoming spaceborne remote sensing missions.

Functional niche occupation and species richness in herbaceous plant communities along experimental gradients of stress and disturbance.

The patterns of niche occupation in functional trait space have been widely studied to understand the processes of community assembly, but are rarely linked to environmental conditions (here, stress and disturbance). In this study, we investigate (1) how the pattern of functional niche occupation, incorporating intraspecific trait variation and covariation, varies along experimental gradients of stress and disturbance, (2) whether habitat filtering and/or limiting similarity modify the pattern, and (3) whether their strength varies as a function of species richness or levels of stress and disturbance. We constructed an experimental system consisting of 24 herbaceous plant mesocosms under different levels of stress and disturbance, and measured ten traits on five individuals for each species in each mesocosm. We quantified the total functional niche volume occupied by an entire mesocosm, the functional niche overlap among species within a mesocosm and the average functional niche volume occupied per species, and investigated how these metrics varied from species-poor to species-rich mesocosms along gradients of stress and disturbance. Species richness and functional niche overlap correlated positively to disturbance at low and medium levels of stress, but peaked at the intermediate level of disturbance when stress was high. The total functional niche volume and average functional niche volume did not change significantly along these gradients. Compared to null models, each mesocosm occupied a smaller total functional niche volume (habitat filtering) and the species within each mesocosm overlapped less and were more functionally specialized (limiting similarity). Moreover, the standardized metrics (to the null expectations) did not change significantly under different levels of stress and disturbance. This experimental evidence shows that both habitat filtering and limiting similarity determine the patterns of functional niche occupation and species richness, but their strength does not change along environmental gradients of stress and disturbance.

Effects of different grazing intensities on the composition and diversity of Collembola communities in southern Brazilian grassland

Most studies evaluating the effects of grazing intensities on soils in Brazilian grasslands have focused on abiotic parameters, especially chemical or physical properties. In this context, soil arthropods have been largely unexplored, especially Collembola. This research addressed the effect of different grazing intensities on the composition and structure (abundance, richness, diversity, and evenness) of Collembola communities under different grazing intensity levels. Collembola were collected at different cattle grazing intensity level treatments (high, moderate, and low) in southern Brazilian native grasslands (also known as Campos). Our findings indicated significant changes in the composition of Collembola communities through grazing intensities. The treatment with the lowest grazing intensity was found to be substantially different from all others, probably because of a high abundance of some taxa (i.e. Entomobrya spp). We also observed that morphospecies richness and diversity tended to peak at moderate grazing intensities, whereas total abundance was higher in the lowest grazing intensity treatment. This study provides experimental evidence that disturbances caused by cattle grazing in native grasslands might impact soil faunal communities: increases in grazing intensity affected soil arthropod composition and structure by reducing their abundance, richness and diversity. It is important to highlight taxonomical richness and diversity as an intrinsic characteristic of communities insuring their functionality as a consequence of niche occupation and complementarity.

Emerging therapeutic applications of CRISPR genome editing.

The rapid evolution of tools for genome editing has created a dizzying array of possibilities for novel therapeutic strategies, even though to date only a handful of clinical applications have been realised. Proof-of-concept demonstrations of targeted genome modification in vitro and in small animal models of inherited single gene disorders have to be translated into effective therapies. Interest has naturally gravitated towards opportunities for collection, ex vivo modification and return of blood, immune and stem cells. Initial applications designed to modify T cells to protect against HIV or to confer potent anti-leukaemic effects have reached clinical phase, and further applications to modify blood stem cells are close to being applied. There are generic considerations of safety, on- and off-target effects and possible genotoxicity as well as issues relating to more sophisticated systemic approaches where niche occupation and host immunity become relevant. Such issues will be likely addressed over time, with carefully designed clinical trials required to determine therapeutic risks and benefits.

Dietary Adaptations of Early and Middle Pleistocene Equids From the Anagni Basin (Frosinone, Central Italy)

The intermontane Anagni Basin (Frosinone, central Italy) is an important region for Italian biochronology and paleoecology due to the presence of two rich fossil assemblages dated to the Early (Coste San Giacomo) and Middle Pleistocene (Fontana Ranuccio). These sites have yielded a vast collection of large fossil mammals with a well-documented presence of fossil equids in both localities (represented mostly by isolated teeth). Coste San Giacomo is dated to around 2.1 Ma, thereby having recorded the effects of the onset of the Quaternary glacial cycles, which led to a gradual trend towards colder and more arid conditions in the Northern Hemisphere. The fossil equids of this site belong to the first group of grazing stenonid equids of the genus that spread to the Italian Peninsula during the so called Elephant- Equus event, which marked the appearance of new large mammals living in herds in open and arid environments. The site of Fontana Ranuccio is dated to around 400 ka, close to the MIS 12 – 11 succession (the Mid-Brunhes event), which marked the end of the Middle Pleistocene Transition. The fossil horses from Fontana Ranuccio represent one of the oldest caballoid (or true horses) populations of the Italian Peninsula. The Anagni Basin, thus, provides important data to investigate paleoecological adaptations of these groups of equids in response to two critical environmental and climatic shifts of the Pleistocene. We explore their niche occupation by examining long-term dental wear patterns and tooth enamel carbon and oxygen stable isotopic composition. Both taxa appear to have exhibited a narrow dietary niche, displaying a clear abrasive (highly specialized) grass-rich diet. In particular, caballoid equids from Fontana Ranuccio show a more abrasion-dominated mesowear signature. Stenonid equids from Coste San Giacomo exploited broader and more diverse landscapes during the Early Pleistocene, whereas caballoid horses from Fontana Ranuccio appeared to have limited their dietary adaptations to a stricter grazing behavior in more closed environments.

Origin and differentiation trajectories of fibroblastic reticular cells in the splenic white pulp

The splenic white pulp is underpinned by poorly characterized stromal cells that demarcate distinct immune cell microenvironments. Here we establish fibroblastic reticular cell (FRC)-specific fate-mapping in mice to define their embryonic origin and differentiation trajectories. Our data show that all reticular cell subsets descend from multipotent progenitors emerging at embryonic day 19.5 from periarterial progenitors. Commitment of FRC progenitors is concluded during the first week of postnatal life through occupation of niches along developing central arterioles. Single cell transcriptomic analysis facilitated deconvolution of FRC differentiation trajectories and indicated that perivascular reticular cells function both as adult lymphoid organizer cells and mural cell progenitors. The lymphotoxin-β receptor-independent sustenance of postnatal progenitor stemness unveils that systemic immune surveillance in the splenic white pulp is governed through subset specification of reticular cells from a multipotent periarterial progenitor cell. In sum, the finding that discrete signaling events in perivascular niches determine the differentiation trajectories of reticular cell networks explains the development of distinct microenvironmental niches in secondary and tertiary lymphoid tissues that are crucial for the induction and regulation of innate and adaptive immune processes.

A new genus and species of pycnodontid fish Flagellipinna rhomboides, gen. et sp. nov. (Neopterygii, Pycnodontiformes), from the Upper Cretaceous (Cenomanian) of Lebanon, with notes on juvenile form and ecology

ABSTRACTThe Upper Cretaceous (Cenomanian) limestone quarry of Haqel, Lebanon, is home to one of the largest diversities of fossil actinopterygians in the Mesozoic, particularly of pycnodontiform fishes. Here, we describe a pycnodontiform fish, Flagellipinna rhomboides, gen. et sp. nov., from this locality based on four specimens. It is considered a member of the derived family Pycnodontidae due to the presence of a postparietal process. This taxon is distinct from other pycnodontids due to its diamond-shaped body, whip-like dorsal fin, postcloacal scales with forward-pointing spines, and acute anterior profile with a concave slope, giving it a ‘hunchback’ appearance. The prognathous snout armed with molariform teeth suggests that this pycnodont preyed on a variety of shelled animals from crevices. The smallest specimen is distinct in that it has a larger orbit size, no spines on the contour scales, poorly ossified skull roof bones, a notochord partially covered by arcocentra, and lacks whip-like filament on the dorsal fin, which suggest that it is a juvenile/subadult. The differences between the juvenile/subadult and other larger specimens suggest a change in ecological niche occupation during ontogeny, going from a generalized forager that lived in complex, reef habitats to moving into deeper waters to feed from crevices on the reef edge. These findings provide a more complete picture of the possible life history strategies that pycnodontiforms may have used in order to exploit different resources throughout their lives.

Individuals in space: personality-dependent space use, movement and microhabitat use facilitate individual spatial niche specialization

Personality-dependent space use and movement might be crucially influencing ecological interactions, giving way to individual niche specialization. This new approach challenges classical niche theory with potentially great ecological consequences, but so far has only scarce empirical support. Here, we investigated if and how consistent inter-individual differences in behavior predict space use and movement patterns in free-ranging bank voles (Myodes glareolus) and thereby contribute to individual niche specialization. Individuals were captured and marked from three different subpopulations in North-East Germany. Inter-individual differences in boldness and exploration were quantified via repeated standardized tests directly in the field after capture. Subsequently, space use and movement patterns of a representative sample of the behavioral variation (n = 21 individuals) were monitored via automated VHF telemetry for a period of four days, yielding on average 384 locations per individual. Bolder individuals occupied larger home ranges and core areas (estimated via kernel density analyses), moved longer distances, spatially overlapped with fewer conspecifics and preferred different microhabitats based on vegetation cover compared to shyer individuals. We found evidence for personality-dependent space use, movement, and occupation of individual spatial niches in bank voles. Thus, besides dietary niche specialization also spatial dimensions of ecological niches vary among individuals within populations, which may have important consequences for ecological interactions within- and between species.

Shifts in Climatic Niche Occupation in Astrophytum Coahuilense (H. Möller) Kayser and Its Potential Distribution in Mexico

It has frequently been reported that species with strong niche conservatism will not be able to adapt to new climatic conditions, so they must migrate or go extinct. We have evaluated the shifts in climatic niche occupation of the species Astrophytum coahuilense and its potential distribution in Mexico. We understand niche occupation as the geographic zones with available habitats and with the presence of the species. To assess shifts in climatic niche occupation, we used niche overlap analysis, while potential distribution modeling was performed based on the principle of maximum entropy. The results indicate that this species presents a limited amplitude in its climate niche. This restriction of the climatic niche of A. coahuilense limits its ability to colonize new geographical areas with different climatic environments. On the other hand, the potential distribution models obtained from the present study allow us to identify potential zones based on the climatic requirements of the species. This information is important to identify high priority areas for the conservation of A. coahuilense.

Complex mammalian-like haematopoietic system found in a colonial chordate.

SummaryHematopoiesis is an essential process that evolved in multicellular animals. At the heart of this process are hematopoietic stem cells (HSCs), which are multipotent, self-renewing and generate the entire repertoire of blood and immune cells throughout an animal’s life1. While there are comprehensive studies on vertebrate HSC self-renewal, differentiation, physiological regulation and niche occupation, relatively little is known about their evolutionary origin and their niches. Here we study the hematopoietic system of Botryllus schlosseri, a colonial tunicate that has vasculature, circulating blood cells, and interesting stem cell biology and immunity characteristics2–8. Self-recognition between genetically compatible B. schlosseri colonies leads to the formation of natural parabionts with shared circulation, whereas incompatible colonies reject each other 3,4,7. Using flow-cytometry, whole-transcriptome sequencing of defined cell populations and diverse functional assays, we identified HSCs, progenitors, immune-effector cells, and an HSC niche, and demonstrated that self-recognition inhibits allospecific cytotoxic reactions. Our study reveals that HSC and myeloid lineage immune cells emerged in a common ancestor of tunicates and vertebrates, and these results also suggest that hematopoietic bone marrow and the B. schlosseri endostyle niche evolved from a common origin.

Ecological differentiation facilitates fine-scale coexistence of sexual and asexual Boechera.

Ecological differentiation (ED) between sexual and asexual organisms may permit the maintenance of reproductive polymorphism. Several studies of sexual/asexual ED in plants have shown that the geographic ranges of asexuals extend beyond those of sexuals, often in areas of higher latitude or elevation. But very little is known about ED at fine scales, wherein coexistence of sexuals and asexuals may be permitted by differential niche occupation. We used 149 populations of sexual and apomictic lineages in the genus Boechera (rock cress) collected across a portion of this mustard's vast range. We characterized reproductive mode, ploidy, and species identity or hybrid parentage of each individual, and then used a multipronged statistical approach to (1) identify ED between sexuals and asexuals; (2) investigate the impacts of two confounding factors, polyploidy and hybridization, on ED; and (3) determine the environmental variables underlying ED. We found that sexuals and asexuals are significantly ecologically differentiated across the landscape, despite fine-scale interdigitation of these two reproductive forms. Asexual reproduction was strongly associated with greater disturbance, reduced slope, and greater environmental variability. Although ploidy had little effect on the patterns observed, hybridization has a unique impact on the relationships between asexual reproduction and specific environmental variables. Ecological differentiation along the axes of disturbance, slope, and climatic variability, as well as the effects of heterozygosity, may contribute to the maintenance of sexuality and asexuality across the landscape, ultimately impacting the establishment and spread of asexual lineages.

Intrasexually selected weapons.

We propose a practical concept that distinguishes the particular kind of weaponry that has evolved to be used in combat between individuals of the same species and sex, which we term intrasexually selected weapons (ISWs). We present a treatise of ISWs in nature, aiming to understand their distinction and evolution from other secondary sex traits, including from 'sexually selected weapons', and from sexually dimorphic and monomorphic weaponry. We focus on the subset of secondary sex traits that are the result of same-sex combat, defined here as ISWs, provide not previously reported evolutionary patterns, and offer hypotheses to answer questions such as: why have only some species evolved weapons to fight for the opposite sex or breeding resources? We examined traits that seem to have evolved as ISWs in the entire animal phylogeny, restricting the classification of ISW to traits that are only present or enlarged in adults of one of the sexes, and are used as weapons during intrasexual fights. Because of the absence of behavioural data and, in many cases, lack of sexually discriminated series from juveniles to adults, we exclude the fossil record from this review. We merge morphological, ontogenetic, and behavioural information, and for the first time thoroughly review the tree of life to identify separate evolution of ISWs. We found that ISWs are only found in bilateral animals, appearing independently in nematodes, various groups of arthropods, and vertebrates. Our review sets a reference point to explore other taxa that we identify with potential ISWs for which behavioural or morphological studies are warranted. We establish that most ISWs come in pairs, are located in or near the head, are endo- or exoskeletal modifications, are overdeveloped structures compared with those found in females, are modified feeding structures and/or locomotor appendages, are most common in terrestrial taxa, are frequently used to guard females, territories, or both, and are also used in signalling displays to deter rivals and/or attract females. We also found that most taxa lack ISWs, that females of only a few species possess better-developed weapons than males, that the cases of independent evolution of ISWs are not evenly distributed across the phylogeny, and that animals possessing the most developed ISWs have non-hunting habits (e.g. herbivores) or are faunivores that prey on very small prey relative to their body size (e.g. insectivores). Bringing together perspectives from studies on a variety of taxa, we conceptualize that there are five ways in which a sexually dimorphic trait, apart from the primary sex traits, can be fixed: sexual selection, fecundity selection, parental role division, differential niche occupation between the sexes, and interference competition. We discuss these trends and the factors involved in the evolution of intrasexually selected weaponry in nature.

Short- and long-term salinity challenge, osmoregulatory ability, and (Na+, K+)-ATPase kinetics and α-subunit mRNA expression in the gills of the thinstripe hermit crab Clibanarius symmetricus (Anomura, Diogenidae)

The evolutionary history of the Crustacea reveals ample adaptive radiation and the subsequent occupation of many osmotic niches resulting from physiological plasticity in their osmoregulatory mechanisms. We evaluate osmoregulatory ability in the intertidal, thinstripe hermit crab Clibanarius symmetricus after short-term exposure (6 h) or long-term acclimation (10 days) to a wide salinity range, also analyzing kinetic behavior and α-subunit mRNA expression of the gill (Na+, K+)-ATPase. The crab strongly hyper-regulates its hemolymph at 5 and 15‰S (Salinity, g L−1) but weakly hyper-regulates up to ≈27‰S. After 6 h exposure to 35‰S and 45‰S, C. symmetricus slightly hypo-regulates its hemolymph, becoming isosmotic after 10 days acclimation to these salinities. (Na+, K+)-ATPase specific activity decreases with increasing salinity for both exposure periods, reflecting physiological adjustment to isosmoticity. At low salinities, the gill enzyme exhibits a single, low affinity ATP binding site. However, at elevated salinities, a second, high affinity, ATP binding site appears, independently of exposure time. (Na+, K+)-ATPase α-subunit mRNA expression increases only after 10 days acclimation to 5‰S. Our findings suggest that hemolymph hyper-regulation is effected by alterations in enzyme activity during short-term exposure, but is sustained by increased mRNA expression during long-term acclimation. The decrease in gill (Na+, K+)-ATPase activity seen as a consequence of increasing salinity appears to underlie biochemical adjustments to hemolymph isosmoticity as hypo-regulatory ability diminishes.

Specific parasites indirectly influence niche occupation of non-hosts community members.

The coexistence of phylogenetically related species is an attractive topic because of the potentially intense interspecific competition. The most often investigated mechanisms mediating coexistence of these species are environmental filtering and niche partitioning. However, the role of other factors, such as species-specific parasites, is still poorly understood. Along the riparian understory of a tropical forest, we explored niche occupation and coexistence between Chrysso intervales and Helvibis longicauda, two related syntopic web-building spiders. We also investigated the effect of H. longicauda mortality induced by a specific fungus parasite, Gibellula pulchra, on the dynamic of C. intervales spatial distribution. Coexistence was mediated mainly by a fine-scale horizontal spatial segregation. H. longicauda built webs almost exclusively close to the river, while C. intervales occupied adjacent areas (10-20m away from margins). We also found differentiation in other niche dimensions that might allow coexistence, such as in plants occupied, height of web placement, width of leaves used for thread attachment and phenology. H. longicauda mortality caused by fungi was higher during winter than in summer. Consequently, the abundance of C. intervales increased at distances close to the river, indicating competitive release through a density-mediated indirect effect. This demonstrates how non-competitive specific-antagonists can indirectly affect other non-hosts competing community members and influence their spatial distribution in fine-scale ranges. We suggest that environmental filtering restricts H. longicauda to cooler regions; niche partitioning leads populations to occupy different vertical strata and competitive exclusion precludes C. intervales to reach river margins, generating an unusual horizontal zonation pattern.

The Impact of ExoS on Pseudomonas aeruginosa Internalization by Epithelial Cells Is Independent of fleQ and Correlates with Bistability of Type Three Secretion System Gene Expression.

ABSTRACTPseudomonas aeruginosa is internalized into multiple types of epithelial cell in vitro and in vivo and yet is often regarded as an exclusively extracellular pathogen. Paradoxically, ExoS, a type three secretion system (T3SS) effector, has antiphagocytic activities but is required for intracellular survival of P. aeruginosa and its occupation of bleb niches in epithelial cells. Here, we addressed mechanisms for this dichotomy using invasive (ExoS-expressing) P. aeruginosa and corresponding effector-null isogenic T3SS mutants, effector-null mutants of cytotoxic P. aeruginosa with and without ExoS transformation, antibiotic exclusion assays, and imaging using a T3SS-GFP reporter. Except for effector-null PA103, all strains were internalized while encoding ExoS. Intracellular bacteria showed T3SS activation that continued in replicating daughter cells. Correcting the fleQ mutation in effector-null PA103 promoted internalization by >10-fold with or without ExoS. Conversely, mutating fleQ in PAO1 reduced internalization by >10-fold, also with or without ExoS. Effector-null PA103 remained less well internalized than PAO1 matched for fleQ status, but only with ExoS expression, suggesting additional differences between these strains. Quantifying T3SS activation using GFP fluorescence and quantitative reverse transcription-PCR (qRT-PCR) showed that T3SS expression was hyperinducible for strain PA103ΔexoUT versus other isolates and was unrelated to fleQ status. These findings support the principle that P. aeruginosa is not exclusively an extracellular pathogen, with internalization influenced by the relative proportions of T3SS-positive and T3SS-negative bacteria in the population during host cell interaction. These data also challenge current thinking about T3SS effector delivery into host cells and suggest that T3SS bistability is an important consideration in studying P. aeruginosa pathogenesis.

Occurrences of Jellyfish in the Industrial Fishing Activity of the Southeastern and Southern Regions of Brazil

AbstractThis work presents the results of a survey of the occurrences of jellyfish bycatch in trawling, bottom gill‐net, purse seine, and pole‐and‐line fishing gear in the main fishing port of southern Brazil Survey results are based on interviews conducted with fishers at the time of landing the catch. Historical data were also obtained on the peak occurrences of jellyfish in the last 20 years through interviews with fishers that had worked for up to 50 years in the area. Jellyfish were found to occur with the different fishing gear and to have preferential demersal behavior. The highest frequencies of occurrences were observed on the continental shelf and accompanied the trips of the fishing fleet at different times of the year. Hydrozoan jellyfish, presumably Rhacostoma atlanticum and Olindias sambaquiensis, were the most frequent and abundant species recorded during the period, but the historical data suggest peaks of occurrence every 10 years when dominant groups are replaced with others. The hypotheses of the change of diversity in the 10‐year period from 1993 to 2013 can be attributed to natural processes associated with ecological strategies used by gelatinous organisms or the occupation of niches that become available with the withdrawal of planktivorous fish species in the context of overfishing.