Rainfall constitutes the primary input in the nutrient flux within forest ecosystems. The forest canopy modulates this flux by partitioning rainfall and selectively absorbing or adding nutrients. In mixed forests, variation in tree species composition regulates rainwater chemical composition, potentially leading to spatial heterogeneity in nutrient distribution and influencing nutrient cycling processes. This study examined the partitioning of rainfall into throughfall and stemflow, as well as their associated nutrient concentrations and fluxes, in a mixed broadleaf and coniferous forest on Changbai Mountain in Northeast China. We observed a rising trend in nutrient contents from rainfall to throughfall and then stemflow. The nutrient contents of stemflow varied largely with tree species due to the differences in canopy structure and bark morphological characteristics. The nutrient input contributed by throughfall and stemflow was 92.30 kg ha−1 during the observation period, and most elements underwent passive leaching through washout except for F− and Na+. We note that the nutrient fluxes in stemflow differed among tree species, with Pinus koraiensis (PK) delivering more acid group anions and Quercus mongolica (QM) providing more cations. Our research provides new insights into nutrient cycling within mixed forest canopies, sparking a transformative advancement in forest management and protection strategies through hydrochemistry-driven solutions.