Soil Nutrient Cycling Research Articles

Effects of Long-Term Sod Culture Management on Soil Fertility, Enzyme Activities, Soil Microorganisms, and Fruit Yield and Quality in "Jiro" Sweet Persimmon Orchard.

Clean tillage frequently causes the loss of soil nutrients and weakens microbial ecosystem service functions. In order to improve orchard soil nutrient cycling, enhance enzyme activities and microbial community structure in a "Jiro" sweet persimmon orchard, sod culture management was carried out to clarify the relationship among soil nutrient, microbial communities, and fruit yield and quality in persimmon orchard. The results showed that sod culture management increased the content of organic matter, total organic carbon, nitrogen, phosphorus, and potassium in the soil, thus improving soil fertility. Compared with clean tillage orchards, sod culture methods significantly increased soil enzyme activities and microbial biomass carbon (MBC) content. The abundance-based coverage estimator (ACE) and the simplest richness estimators (Chao l) indices of the bacterial community and all diversity and richness indices of the fungal community significantly increased in the sod culture orchard, which indicated that sod culture could increase the richness and diversity of the soil microbial community. The dominant bacterial phyla were Proteobacteria (32.21~41.13%) and Acidobacteria (18.76~23.86%), and the dominant fungal phyla were Mortierellomycota (31.11~83.40%) and Ascomycota (3.45~60.14%). Sod culture drove the composition of the microbial community to increase the beneficial microbiome. Correlation analyses and partial least squares path modeling (PLS-PM) comparative analyses showed that the soil chemical properties (mainly including soil organic matter content, total organic carbon content, total potassium content, and total nitrogen content), soil enzyme activities and soil microorganisms were strongly correlated with fruit yield and quality. Meanwhile, soil nutrient, soil enzyme, and soil microbes had also influenced each other. Our results showed that long-term ryegrass planting could improve soil fertility, enzyme activities, and microbial community compositions. Such changes might lead to a cascading effect on the fruit yield and quality of "Jiro" sweet persimmons.

Kinetics and pathways of sub‐lithic microbial community (hypolithon) development

AbstractType I hypolithons are microbial communities dominated by Cyanobacteria. They adhere to the underside of semi‐translucent rocks in desert pavements, providing them with a refuge from the harsh abiotic stresses found on the desert soil surface. Despite their crucial role in soil nutrient cycling, our understanding of their growth rates and community development pathways remains limited. This study aimed to quantify the dynamics of hypolithon formation in the pavements of the Namib Desert. We established replicate arrays of sterile rock tiles with varying light transmission in two areas of the Namib Desert, each with different annual precipitation regimes. These were sampled annually over 7 years, and the samples were analysed using eDNA extraction and 16S rRNA gene amplicon sequencing. Our findings revealed that in the zone with higher precipitation, hypolithon formation became evident in semi‐translucent rocks 3 years after the arrays were set up. This coincided with a Cyanobacterial ‘bloom’ in the adherent microbial community in the third year. In contrast, no visible hypolithon formation was observed at the array set up in the hyper‐arid zone. This study provides the first quantitative evidence of the kinetics of hypolithon development in hot desert environments, suggesting that development rates are strongly influenced by precipitation regimes.

Mast seeding in European beech (Fagus sylvatica L.) is associated with reduced fungal sporocarp production and community diversity.

Mast seeding is a well-documented phenomenon across diverse forest ecosystems. While its effect on aboveground food webs has been thoroughly studied, how it impacts the soil fungi that drive soil carbon and nutrient cycling has not yet been explored. To evaluate the relationship between mast seeding and fungal resource availability, we paired a Swiss 29-year fungal sporocarp census with contemporaneous seed production for European beech (Fagus sylvatica L.). On average, mast seeding was associated with a 55% reduction in sporocarp production and a compositional community shift towards drought-tolerant taxa across both ectomycorrhizal and saprotrophic guilds. Among ectomycorrhizal fungi, traits associated with carbon cost did not explain species' sensitivity to seed production. Together, our results support a novel hypothesis that mast seeding limits annual resource availability and reproductive investment in soil fungi, creating an ecosystem 'rhythm' to forest processes that is synchronized above- and belowground.

Earthworm cast microbiomes differ across soil types in northern forests

Earthworms influence soil properties and element cycling, notably through the formation of casts. These biogenic structures are hotspots of microbial activity and play a role in soil carbon and nutrient dynamics. Previous research revealed that earthworm casts harbour distinct microbiomes from mineral soils under controlled laboratory conditions. But field studies are scarce, especially in northern forests currently undergoing earthworm invasion. Identifying drivers of earthworm cast microbiomes in the field and their potential differences with mineral soils and forest floors is therefore crucial to advance our understanding of their impact on soil functioning and nutrient cycling. Using a combined PLFA and DNA (ITS and 16S) approach, we characterized the fungal and bacterial communities of field-collected earthworm casts from three soil types: Luvisols, Brunisols (WRB: Cambisols), and Podzols. We compared them with those of surrounding mineral soils and forest floors. We did not find evidence of community filtering effects following gut transit and mixing of mineral soil and forest floor, as α- diversity and species richness were not reduced in casts. Cast microbiomes were dominated by taxa also found in forest floors and mineral soils. Yet they presented key differences in that they were systematically enriched in saprotrophic fungi and Bacteroidota and depleted in ectomycorrhizal fungi. Further, they were more similar to forest floor than mineral soil microbiomes. We also found that, although cast microbiomes were dominated by taxa common to casts of all sites, they differed across soil types. This finding highlights the prevailing role of pedogenesis in explaining the microbiome composition of field-aged casts. Our results also underscore the importance of sampling both forest floors and mineral soils when investigating the effects of earthworms on carbon and microbial dynamics in forest ecosystems.

Aggregate stability and carbon and N dymamics in macroaggregate size fractions with different soil texture

Soil nutrient cycling, the distribution of soil aggregates, and their stability are directly influenced by soil texture. Different sizes of soil aggregates provide microhabitats for microorganisms and therefore influence soil carbon (C) and nitrogen (N) mineralization. The purpose of the present study was to assess the aggregate stability and dynamics of carbon and nitrogen in macroaggregate size fractions (1-8 mm) with different clay content from meadow soils. Surface soil samples (0-15 cm) were collected from 4- to 5-year-old forage crops. Four macroaggregate size classes were isolated by dry sieving and analyzed for their mass proportions: fine macroaggregates (FM) (less than 1 mm), medium-fine macroaggregates (MFM) (1-2 mm), medium-coarse macroaggregates (MCM) (2-4 mm), and large-coarse macroaggregates (LCM) (4-8 mm). The dry mean weight diameter (MWD), organic carbon (OC), total nitrogen (TN), carbon and nitrogen of microbial biomass (C-MB, N-MB) were determined. CO2 emission and net nitrogen mineralized (NM) were measured after 14 weeks of incubation. The amounts of FM were significantly lower than those of intermediate macroaggregates (MCM and MFM) and decreased markedly with increasing clay content within soil macroaggregates. In general, the amounts of macroaggregate size fractions were lowest in soils with high clay content. MWD exhibited a significant correlation with particle size distribution, OC, and MB-C. OC, TN, MB-C, and MB-N contents within macroaggregates increased with decreasing macroaggregate size and increasing clay content of macroaggregate fractions. The CO2 emission and NM content increased with increasing macroaggregate size, indicating higher organic C and N mineralization activity in larger macroaggregates. Mineralization of OC was lowest in macroaggregate fractions with the highest clay content. We conclude that clay content can increase the protection of microbial biomass in meadow soils. Small macroaggregates tend to contain more recalcitrant organic matter compared to larger macroaggregates.

Fungal and Prokaryotic Communities in Soil Samples of the Aral Sea Dry Bottom in Uzbekistan

Due to the falling water level in the Aral Sea and Muynak Lake, the content of salts dissolved in the water has gradually increased, and toxic elements have been deposited at the lake’s bottom and subsequently washed into the Aral region by the river. Bacteria, archaea and fungi are crucial for the cycling of several important inorganic nutrients in soils. From 15 genera and 31 species of recovered microscopic filamentous fungi, a big group was melanized, of which most of them were also phytopathogenic. The second group consisted of keratinophilic species. Isolated bacteria mainly included members of the genera Arthrobacter, Bacillus, Massilia, Rhodococcus and Nocardiopsis. High-throughput sequencing analysis permitted a better view of the mycobiome and prokaryotic communities (comprising archaea). The cultivation and sequencing approaches were shown to be complementary. The aim of the work was to identify soil microorganisms, including the order Halobacteriales, and to discover the differences in species diversity depending on soil salinity and the presence of PTEs in soil.

Evaluation of the nitrogen uptake efficacy of daikon radish under greenhouse conditions on sandy soils

AbstractCover crops can be a great addition to agricultural systems to improve soil health and nutrient cycling. One of the many qualities that cover crops possess is recovering residual nutrients. This study was established to estimate daikon radish (Raphanus sativus var. Longipinnatus) nitrogen (N) uptake, partitioning, and accumulation in a short time in Florida conditions. In greenhouse conditions, two Florida sandy soils were planted with daikon radish with three N rates (0, 50, and 101 kg N ha−1 as urea) following a randomized complete block with four replications. The treatments were organized in a two‐by‐three full factorial arrangement with the three N fertilizer rates. Biomass accumulation, N uptake, and partitioning into shoots and roots were estimated, and residual soil N was calculated. Increasing the amount of N applied to daikon radish plants did not increase biomass production or N accumulation in the shoots and roots of the plants. Daikon radish plants grown without N fertilization were able to produce a similar amount of biomass as those with N applications in their early growth stage. This suggests that daikon radish has the potential to adapt to the sandy soils of Florida and could efficiently utilize the residual soil N. This study shows the potential use of daikon radish as a cover crop in the row middles of citrus groves. The findings suggest that daikon radish plants could thrive in these unfertilized areas and offer promising benefits to the citrus orchards in terms of providing ground cover and additional advantages.

Interruption after Short-Term Nitrogen Additions Improves Ecological Stability of Larix olgensis Forest Soil by Affecting Bacterial Communities.

Atmospheric nitrogen deposition can alter soil microbial communities and further impact the structure and function of forest ecosystems. However, most studies are focused on positive or negative effects after nitrogen addition, and few studies pay attention to its interruption. In order to investigate whether interruption after different levels of short-term N additions still benefit soil health, we conducted a 2-year interruption after a 4-year short-term nitrogen addition (10 and 20 kg N·hm-2·yr-1) experiment; then, we compared soil microbial diversity and structure and analyzed soil physicochemical properties and their correlations before and after the interruption in Larix olgensis forest soil in northeast China. The results showed that soil ecological stabilization of Larix olgensis forest further improved after the interruption compared to pre-interruption. The TN, C:P, N:P, and C:N:P ratios increased significantly regardless of the previous nitrogen addition concentration, and soil nutrient cycling was further promoted. The relative abundance of the original beneficial microbial taxa Gemmatimonas, Sphingomonas, and Pseudolabrys increased; new beneficial bacteria Ellin6067, Massilia, Solirubrobacter, and Bradyrhizobium appeared, and the species of beneficial soil microorganisms were further improved. The results of this study elucidated the dynamics of the bacterial community before and after the interruption of short-term nitrogen addition and could provide data support and a reference basis for forest ecosystem restoration strategies and management under the background of global nitrogen deposition.

Differential responses of the electron transfer capacities of soil humic acid and fulvic acid to long-term wastewater irrigation

Wastewater irrigation is used to supplement agricultural irrigation because of its benefits and freshwater resource scarcity. However, whether wastewater irrigation for many years affects the electron transfer capacity (ETC) of natural organic matter in soil remains unclear, and organic matter could influence the decomposition and mineralization of substances with redox characteristics in soil through electron transfer, ultimately affecting the soil environment. The composition of soil humic substances (HS) is highly complex, and the effects of soil humic acid (HA) and fulvic acid (FA) on ETC is poorly understood. In this study, we separately evaluated the responses of the electron-accepting capacity (EAC) and electron-donating capacity (EDC) of soil HA and FA in agricultural fields to various durations of wastewater irrigation. Results showed that the EAC of HA and FA increased significantly with increasing the duration of wastewater irrigation. When wastewater irrigation lasted for 56 years, the EAC of HA showed a higher increment (590 %) than that of FA (223 %). The EDC of soil HA and FA, conversely, decreased compared to the control, with the highest reduction of 35.6 % for HA and 65.9 % for FA. Specifically, the EDC of HA gradually decreased starting from 29 years of wastewater irrigation, whereas the decrease in the EDC of FA exhibited no clear pattern in relation to the duration of wastewater irrigation. Increased soil organic matter and total nitrogen content under long-term wastewater irrigation led to an increase in sucrase and phosphatase activities, along with an increase in EAC and a decrease in EDC of HS. This suggests that soil enzyme activities may ultimately lead to changes in ETC. The results of this research provide practical insights into the redox system in soil and its driving role in soil organic matter transformation and nutrient cycling under wastewater irrigation.

Effects of Aviation Mutagenesis on Soil Chemical Indexes, Enzyme Activities, and Metabolites of Dahongpao (Camellia sinensis) Tea Trees.

Aviation mutagenesis is a breeding method for the rapid selection of superior plant varieties. In this study, rhizosphere soil chemical indexes, soil enzyme activities, and soil metabolites were measured in Dahongpao tea trees with aviation mutagenesis (TM) and without aviation mutagenesis (CK). The main soil metabolites distinguishing TM and CK and their relationships with soil chemical indexes and soil enzyme activities were analyzed and obtained. The results showed that there was no significant change in the rhizosphere soils' pH of TM tea trees compared to CK (p = 0.91), while all other chemical indexes of TM were significantly higher than CK (p < 0.05). In addition, the activities of enzymes related to soil nutrient cycling such as urease, protease, sucrase, acid phosphatase and cellulase, and enzymes related to soil antioxidants such as superoxide dismutase, catalase, peroxidase, and polyphenol oxidase were significantly increased (p < 0.05) in the rhizosphere soils of TM tea trees compared to CK. Soil metabolite analysis showed that the main soil metabolites distinguishing CK from TM were carbohydrates, nitrogen compounds, and amines. Of these, carbohydrates and nitrogen compounds were significantly positively correlated with soil chemical indexes and soil enzymes, whereas amine was significantly negatively correlated with soil chemical indexes such as organic matter, total nitrogen, total potassium, available nitrogen, available phosphorus; amine showed significant negative correlation with soil enzymes such as catalase, peroxidase, polyphenol oxidase, and urease. It can be seen that aviation mutagenesis is conducive to improving the ability of tea tree rhizosphere aggregation and transformation of soil nutrients, increasing the total amount of soil nutrients and the content of available nutrients, which is more conducive to promoting the uptake of nutrients by the tea tree, and thus promoting the growth of the tea tree.

Toxicity evaluation of neonicotinoids to earthworm (Eisenia fetida) behaviors by a novel locomotion tracking assay

Pesticides are substances used for controlling, preventing, and repelling pests in agriculture. Among them, neonicotinoids have become the fastest-growing class of insecticides because of their efficiency in targeting pests. They work by strongly binding to nicotinic acetylcholine receptors (nAChRs) in the central nervous system of insects, leading to receptor blockage, paralysis, and death. Despite their selectivity for insects, these substances may be hazardous to non-target creatures, including earthworms. Although earthworms may be invasive in some regions like north America, they contribute to the development of soil structure, water management, nutrient cycling, pollution remediation, and cultural services, positively impacting the environment, particularly in the soil ecosystem. Thus, this study aimed to develop a novel earthworm behavior assay since behavior is a sensitive marker for toxicity assay, and demonstrated its application in evaluating the toxicity of various neonicotinoids. Here, we exposed Eisenia fetida to 1 and 10 ppb of eight neonicotinoids (acetamiprid, clothianidin, dinotefuran, imidacloprid, nitenpyram pestanal, thiacloprid, thiametoxam, and sulfoxaflor) for 3 days to observe their behavior toxicities. Overall, all of the neonicotinoids decreased their locomotion, showed by a reduction of average speed by 24.94–68.63% and increment in freezing time movement ratio by 1.51–4.25 times, and altered their movement orientation and complexity, indicated by the decrement in the fractal dimension value by 24–70%. Moreover, some of the neonicotinoids, which were acetamiprid, dinotefuran, imidacloprid, nitenpyram, and sulfoxaflor, could even alter their exploratory behaviors, which was shown by the increment in the time spent in the center area value by 6.94–12.99 times. Furthermore, based on the PCA and heatmap clustering results, thiametoxam was found as the neonicotinoid that possessed the least pronounced behavior toxicity effects among the tested pesticides since these neonicotinoid-treated groups in both concentrations were grouped in the same major cluster with the control group. Finally, molecular docking was also conducted to examine neonicotinoids' possible binding mechanism to Acetylcholine Binding Protein (AChBP), which is responsible for neurotransmission. The molecular docking result confirmed that each of the neonicotinoids has a relatively high binding energy with AChBP, with the lowest binding energy was possessed by thiametoxam, which consistent with its relatively low behavior toxicities. Thus, these molecular docking results might hint at the possible mechanism behind the observed behavior alterations. To sum up, the present study demonstrated that all of the neonicotinoids altered the earthworm behaviors which might be due to their ability to bind with some specific neurotransmitters and the current findings give insights into the toxicities of neonicotinoids to the environment, especially animals in a soil ecosystem.

Impact of exotic plantation on native Grassland Biodiversity: A 30-Year analysis in Tanzania’s southern highlands

Exotic trees have been introduced in various parts of the world for commercial and environmental reasons such as restoring degraded land and regulating the climate. Despite their economic benefits, they have been found to cause habitat loss and fragmentation, affect soil nutrient cycling, and deplete water quality and quantity. This study examined the extent of land use and land cover changes over the past 30 years, as well as the influence of exotic plant species on native grassland plant composition and diversity in Tanzania’s southern highlands. Drivers and the extent of changes were studied using Landsat imagery in 1990, 2000, 2010 and 2020. The study examined understory native plant species in 12 study sites, including grasslands as control sites near exotic plantations. The study used transects and rectangular plots to compare native plant species with those in exotic tree plantations. Trees with a stem diameter at breast height (DBH) of 10 cm or more were documented in 25 x 20 m plots, while shrubs with a DBH of 5 cm or more but less than 10 cm were recorded in 5 x 2 m sub-plots and grass as well as herbs were recorded in sub-sub plots of 2 x 0.5 m. The native plant composition and diversity were compared among exotic plantations (pine, eucalyptus and black wattle) and neighbouring grasslands. The generalised linear model (GLM) calculated the species abundance, while the native plant diversity in exotic plantations and grasslands was compared using a one-way analysis of variance (ANOVA). The study found that native species diversity is negatively impacted by exotic tree plantations, which displace natural grasslands (p < 0.05). Thus, wild medicinal plants, edible foods and habitats for flora and fauna, including pollinators, have decreased. The study recommends that afforestation and reforestation should emphasise native tree species for nature conservation.

Effect of Long-term Locational Fertilisation on Soil Heavy Metal Content

The prolonged application of fertilizers, often conducted through long-term fertilization trials, offers a robust framework for assessing the effects of continued fertilizer use on agricultural output, soil fertility, and the broader ecological landscape . Despite a wealth of research on soil nutrient cycling and crop yields, there is a relative paucity of studies that address the changes in soil heavy metal concentrations from an environmental conservation perspective. This review aims to outline the implications and risks associated with heavy metals in soil and compile existing findings on how long-term fertilization affects soil heavy metal concentrations.

Pioneer plants enhance soil multifunctionality by reshaping underground multitrophic community during natural succession of an abandoned rare earth mine tailing

Spontaneous natural succession in metal mine tailings is fundamental to the rehabilitation of bare tailing. Here, an abandoned rare earth element (REE) mine tailing with spontaneous colonisation by pioneer plants with different functional traits was selected. Soil nutrient cycling, fertility, organic matter decomposition as well as underground organismal communities and their multitrophic networks were investigated. Compared with the bare tailing, the colonisation with Lycopodium japonicum, Miscanthus sinensis, and Dicranopteris dichotoma increased soil multifunction by 222%, 293%, and 525%, respectively. This was accompanied by significant changes in soil bacterial and protistan community composition and increased soil multitrophic network complexity. Rhizospheres of different plant species showed distinct microbial community composition compared to that of bare tailing. Some WPS-2, Chloroflexi, and Chlorophyta were mainly present in the bare tailing, while some Proteobacteria and Cercozoa were predominantly seen in the rhizosphere. Pearson correlation and Random Forest revealed the biotic factors driving soil multifunction. Structural equation modelling further revealed that pioneer plants improved soil multifunction primarily by decreasing the microbial biodiversity and increasing the multitrophic network complexity. Overall, this highlights the importance of subterrestrial organisms in accelerating soil rehabilitation during natural succession and provides options for the ecological restoration of degraded REE mining areas.

Air-water-fertilizer-coupling Drip Irrigation Facilitates Lettuce Growth by Shaping Rhizosphere Microbiome Associated with Soil Nutrient Cycling

Air-water-fertilizer-coupling Drip Irrigation Facilitates Lettuce Growth by Shaping Rhizosphere Microbiome Associated with Soil Nutrient Cycling

Effects of Organic Amendments and Mineral Fertilizers on Optimizing Nutrient Cycling in Alkaline Soil

Soil microbial biomass carbon (MBC) and nitrogen (MBN) are indicators of microbial size and soil fertility, representing a vital living nutrient reservoir in the soil. This study aimed to evaluate the impact of various organic sources, such as poultry manure (PM), farmyard manure (FYM), compost (CM), and biochar (BC), along with different levels of mineral fertilizers on soil microbial dynamics and nutrient (N, P) mineralization through laboratory incubation experiments. The organic amendments were applied at rates of 0.25%, 0.5%, and 1.0% of soil carbon (w/w), combined with 75%, 50%, and 25% of recommended doses of NPK (120:90 and 60 kg N, P2O5, and K2O ha-1), respectively. Following the application of amendments, the soil underwent a 16-day incubation period to measure CO2 emissions and a 28-day period for N and P mineralization. The rate of CO2 evolution exhibited a significant increase with higher carbon levels but declined over time. Compost showed the highest CO2 evolution at any given time, followed by PM, FYM, and BC, likely due to a higher readily available fraction of carbon. Compost, particularly at the 1% C level in combination with inorganic fertilizer, led to a significant increase in soil microbial biomass C and N. Nitrogen and phosphorous mineralization increased with the duration of the 28-day incubation period. However, the net release of N and P decreased with higher carbon levels, potentially associated with both immobilization and the fact that higher levels received lower (25%) NPK levels. Nevertheless, soils treated with CM and PM maintained higher levels of N and P, associated with their higher fraction of labile nutrients. These findings suggest that the continuous application of organic sources enhances N and P mineralization, soil microbial biomass, and their activity. Therefore, the regular application of carbon sources emerges as a strategic approach to improving the soil health of less fertile alkaline calcareous soils.

Mechanistic evaluation of contrasting modulation in conformation and catalytic performance of urease by surface interaction of graphene oxide and amine- functionalized graphene oxide nanosheets

The increasing use of graphene-based nanomaterials raises concerns about their potential environmental impact as ecotoxicants. This article examines the interaction and effects of graphene oxide (GO) and its amine-derived (GONH2) 2-D nanosheets on urease dynamics, a crucial enzyme in soil nutrient cycling, through spectroscopic, microscopic, and computational analyses. The findings reveal the distinct interaction mechanisms: GO formed ground - and excited-state complexes with urease; thus, fluorescence quenching was static and dynamic via hydrophobic interaction. In contrast, GONH2 nanosheets formed a ground-state complex by static quenching involving Van der Waals and hydrogen bonding. These interactions were energetically favored and altered tryptophan (Trp) residues’ microenvironment more than tyrosine (Tyr). The average exciton lifetime of urease in the presence of GO have decreased from 4.34 ns to 3.647 ns at the mere concentration of 7.11 µM, while for GONH2, no discernable change (4.16 ns) was observed even at the concentration of 16.75 µM. Primarily, the strong interaction of GO leads to the rearrangement of polypeptide structure, reduced α-helices to 12 %, and increased β-sheets by six times. In contrast, with GONH2, α-helices were reduced to 79 %, and β-sheets were increased by 1.8 times at the similar concentration. Molecular docking revealed that neither GO nor GONH2 interacted with the active site of urease, and binding was primarily via hydrophobic, Van der Waals, and hydrogen bonding, concurrent with in-vitro incubation results. Positive total energy (3.85 kJ mol−1) during molecular docking analysis of urease-GO interaction and inhibition in enzyme activity to 62 %, altered Vmax value (0.04606 ± 0.001 mM/s), without affecting the Km (4.78045 ± 0.12 mM) suggested that inhibition was noncompetitive and steric clashes due to disruptive binding might drove the inhibition. Meanwhile, negative total internal energy (-3.97 kJ mol−1) during urease + GONH2 binding and enhanced enzymatic activity by 32 % in-vitro without altering Vmax (0.063091 ± 0.003 mM/s) and Km (4.953943 ± 0.2 mM) values suggested that urease's binding site was well-complemented by GONH2 nanosheets, serving as a redox-mediator and radical-quencher.

Continuous cropping system altered soil microbial communities and nutrient cycles.

Understanding the response of microbial communities and their potential functions is essential for sustainability of agroecosystems under long-term continuous cropping. However, limited research has focused on investigating the interaction between soil physicochemical factors and microbial community dynamics in agroecosystems under long-term continuous cropping. This study probed into the physicochemical properties, metabolites, and microbial diversity of tobacco rhizosphere soils cropped continuously for 0, 5, and 20 years. The relative abundance of bacterial genera associated with nutrient cycling (e.g., Sphingomonas) increased while potential plant pathogenic fungi and beneficial microorganisms showed synergistic increases with the duration of continuous cropping. Variations in soil pH, alkeline nitrogen (AN) content, and soil organic carbon (SOC) content drove the shifts in soil microbial composition. Metabolites such as palmitic acid, 3-hydroxypropionic acid, stearic acid, and hippuric acid may play a key role in soil acidification. Those results enhance our ability to predict shifts in soil microbial community structure associated with anthropogenic continuous cropping, which can have long-term implications for crop production.

Assessing the effectiveness of cover crops on ecosystem services: a review of the benefits, challenges, and trade-offs

ABSTRACT While it is crucial to consider the ecological trade-offs of cover crop effects to promote sustainable agricultural production, there has been limited analysis of the combined effects of cover crops on various ecosystem services. For this purpose, we synthesized 43 meta-analysis and review studies comparing cover crops to monocropping in order to investigate benefits, challenges, and trade-offs among ecosystem services under cover crop implementation. We summarized the current state of knowledge of cover crops effectiveness across 11 ecosystem services in three categories (regulating, provisioning and supporting). We identified the factors influencing the relative benefits and risks of integrating cover crops into crop production systems. These factors include farm practices, planting and termination season, species of cover and main crop, climatic zone and soil properties, cover crop biomass, and residue management. Our findings highlight that compared to monocropping, in general, cover cropping enhances soil biodiversity and nutrient cycling, prevents runoff and Nitrogen leaching, improves soil physical properties and carbon sequestration over the long term, and suppresses pests and weeds. However, trade-offs comprise inconsistencies in primary crop yields and soil water provision. Overall, our result highlighted that a multifunctional cover crop implementation provides substantially more regulating and supporting than other ecosystem services.

Suillus: an emerging model for the study of ectomycorrhizal ecology and evolution.

Research on mycorrhizal symbiosis has been slowed by a lack of established study systems. To address this challenge, we have been developing Suillus, a widespread ecologically and economically relevant fungal genus primarily associated with the plant family Pinaceae, into a model system for studying ectomycorrhizal (ECM) associations. Over the last decade, we have compiled extensive genomic resources, culture libraries, a phenotype database, and protocols for manipulating Suillus fungi with and without their tree partners. Our efforts have already resulted in a large number of publicly available genomes, transcriptomes, and respective annotations, as well as advances in our understanding of mycorrhizal partner specificity and host communication, fungal and plant nutrition, environmental adaptation, soil nutrient cycling, interspecific competition, and biological invasions. Here, we highlight the most significant recent findings enabled by Suillus, present a suite of protocols for working with the genus, and discuss how Suillus is emerging as an important model to elucidate the ecology and evolution of ECM interactions.