Abstract The spatiotemporal variations of annual tropical-cyclone-induced rainfall (TCR) and non-tropical-cyclone-induced rainfall (NTCR) during 1960–2017 in Southeast China are investigated in this study. The teleconnections to sea surface temperature, the Arctic Oscillation, the Southern Oscillation, and the Indian Ocean dipole are examined. A significant decrease in annual TCR in the Pearl River basin was detected, while an increase in annual TCR in rainstorms was observed in the northeast of the Pearl River basin and south of the Yangtze River basin. A northward migration of a TCR belt was identified, which was also indicated by the pronounced anomalies of annual TCR. There was in general an increasing trend of non-tropical-cyclone-induced moderate rain, heavy rain, and rainstorms in Southeast China. Compared with the non-tropical-cyclone-induced heavy rain, the abnormal non-tropical-cyclone-induced rainstorms are more northerly. Both monthly TCR and NTCR were remarkably affected by the Arctic Oscillation, Southern Oscillation, and Indian Ocean dipole. TCR was more easily affected by the Arctic Oscillation compared to NTCR. Significance Statement Tropical-cyclone- and non-tropical-cyclone-induced rainfall (TCR and NTCR) prevails in Southeast China, and their characteristics of spatiotemporal variability are of significance in predicting rainfall over the study area. Therefore, this study aims to detect the degree to which rainfall varies in time and space, respectively, using the Mann–Kendall test and the empirical orthogonal function method. Moreover, to explore which climatic factor contributes the most to the spatiotemporal variability of TCR and NTCR, the teleconnections to the large-scale climatic indices including sea surface temperature, the Arctic Oscillation, the Southern Oscillation, and the Indian Ocean dipole are studied. The spatiotemporal variations of TCR and NTCR were affected by the sea surface temperature and the other three large-scale climatic indices. The findings in this study are expected to deepen the understanding of spatiotemporal variations of TCR and NTCR over Southeast China and the teleconnections to climatic indices.