Northern Amazon Basin Research Articles

Long-Term Environmental Methylmercury Exposure Is Associated with Peripheral Neuropathy and Cognitive Impairment among an Amazon Indigenous Population.

Widespread contamination of the Amazon basin with mercury has been reported to occur since at least the mid-80s due to heavy gold mining activity. Although initial studies have indicated that this may lead to deleterious neurological consequences to the indigenous populations living in the region, further research is needed to better characterize the neurological burden of such long-term exposure. With this aim, a cross-sectional exploratory study has been conducted with the Yanomami indigenous population residing in a northern Amazon region. All participants underwent a structured interview; detailed neurological examination, including assessment for cognitive, motor, coordination, and sensory functions; and laboratorial testing for serum hemoglobin, blood glucose, and methylmercury levels in hair samples. This study enrolled 154 individuals of 30.9 ± 16.8 years of age, of which 56.1% were female. Mean methylmercury levels in hair were 3.9 ± 1.7 µg/g. Methylmercury levels in hair > 6.0 µg/g were found in 10.3%. Among participants with hair methylmercury levels ≥ 6.0 μg/g, the prevalences of peripheral neuropathy and reduced cognitive performance were, respectively, 78.8% (95%CI 15-177%, p = 0.010) and 95.9% (95%CI 16-230.8%, p = 0.012) higher than those of individuals with lower levels. These results suggest that chronic mercury exposure may lead to significant and potentially irreversible neurotoxicity to Yanomami population living in the northern Amazon basin.

Record-Breaking Rainfall in the Northern Amazon in Spring 2022 Tied to the Pacific and Atlantic Sea Surface Temperatures

In the boreal spring of 2022, a record-breaking rainfall event occurred in the northern Amazon basin, causing major economic and property damage. Using observational datasets and sensitivity tests from the linear baroclinic model, this study shows that the combined effect of the Pacific and Atlantic sea surface temperatures (SSTs) contributed to this extreme rainfall event. Negative (positive) SST anomalies in the tropical southeastern Pacific (tropical South Atlantic) favored anomalous westerlies (southeasterlies) from the tropical eastern Pacific (southwestern Atlantic) to the northern Amazon basin, which led to enhanced convergence of water vapor and positive rainfall anomalies in the northern Amazon basin. Our study offers insight into the combined effects of the Pacific and Atlantic SSTs in driving extreme rainfall event in the Amazon basin.

Evaluation of the management potential of timber resources in clearwater floodplain forests in the Amazon using growth models

The Amazonian clearwater igapós are poorly studied floodplain ecosystems that are mainly covered by forests and are undergoing massive threats due to changes in land use and climate. Their hydrochemical characteristics and edaphic conditions fall between those of the eutrophic várzea floodplains on whitewater rivers and those of the oligotrophic igapós on blackwater rivers. Previous studies have indicated the management potential of timber species in the highly dynamic várzea floodplains due to the fast tree growth and high forest productivity. Timber resource management, however, is not recommended for the blackwater ecosystem because of its slow dynamics and high vulnerability to disturbances. For clearwater igapós, information on the potential for sustainable management of timber resources is lacking. In this study, we modeled the growth in diameter, height, and volume to derive species-specific minimum logging diameters (MLD) and felling cycles (FC) for eight merchantable species in the clearwater igapós of the Branco and Tapajós rivers in the northern and southern Amazon Basin, respectively. Diameter growth was modeled by analyzing the tree rings that are annually formed in the Amazonian floodplains as a consequence of the regular and predicable long-term flooding. Growth modeling followed the guidelines of the Growth-Oriented Logging (GOL) concept, with the adjustment of diameter growth improved by applying nonlinear mixed-effects regression. MLDs varied from 36 to 90 cm and FCs ranged from 6 to 21 years, which diverges from the standards of Brazilian logging regulations (MLD: 50 cm; FC: 25–35 years). This indicates the potential for timber resource management, which should be tested and introduced at small scales, integrated in protected areas to stepwise promote the sustainable management of these natural resources by traditional communities to increase their income and the conservation of this ecosystem.

New records and range extension of a Brazilian Amazon white-sand endemic species: Roraimaea aurantiaca Struwe, S.Nilsson & V.A.Albert (Gentianaceae)

Roraimaea aurantiaca Struwe, S.Nilsson & V.A.Albert, a white-sand endemic species, was previously known from only two specimens collected in Roraima state, Brazil. Our new field collections and re-identified herbarium specimens expand this species’ distribution and include the first records from the Brazilian state of Amazonas. Based on this effort, we present a distribution map, preliminary conservation status of Endangered, the first photographs of living plants, and an updated morphological description. This study aggregates new information on the flora of the northern Amazon Basin, in addition to discussing conservation of R. aurantiaca. 

First Record of the Small-billed Elaenia (Elaenia parvirostris) for Western North America

The Small-billed Elaenia (Elaenia parvirostris) is a small flycatcher common on the Atlantic slope of South America. The species breeds below 1000 m elevation in open woodlands, gardens, and forest edges from southern Brazil to northeastern Argentina and migrates north to spend the nonbreeding season in the northern Amazon Basin. Since 2012, it has been documented as a vagrant to North America, with four records from the United States and Canada to date. On the basis of one photographed on Southeast Farallon Island on 4 September 2022, we record a fifth Small-billed Elaenia in North America, a first for California and the Pacific coast. Its novelty notwithstanding, it represents an outlier of an established pattern of vagrancy of tyrant flycatchers from South America reaching North America via overshooting or reverse migration.

The importance of continental evaporation for precipitation in Colombia: A baseline combining observations from stable isotopes and modelling moisture trajectories

AbstractThe hydroclimatology of Northern South America responds to the coupling between the Pacific and Atlantic oceans, the Amazon–Andes interactions, and the orographic barrier of the regional Andes. The relative contributions of oceanic and terrestrial moisture sources have been mostly evaluated in modelling studies, with limited observational data for validation. We combine observations from stable isotopes in precipitation and output from the Lagrangian moisture trajectory tracking model FLEXPART to characterize and contrast the relative contribution of oceanic (from the Atlantic and the Pacific) and terrestrial (from different regions in the continent) moisture sources to mean monthly precipitation in the Andes and Caribbean regions of Colombia. Our results indicate that most moisture becoming rain in the region has an atmospheric residence time that deviates from commonly assumed 10 days. These residence times vary between source and sink regions from 1 day in the case of recycling to more than 10 days in Andean precipitation originating in the Atlantic Ocean. Common integration times for both regions from all sources are commonly in the order of three to 7 days. Most precipitation in the region comes from terrestrial sources including moisture recycling from the same region (>30% for all months), the Orinoco River basin (up to 28% in April), and the northern Amazon basin (up to 17% in June, July, and August); followed by individually considered oceanic sources including the Tropical South Pacific (up to 30% monthly in October, November and December) and Tropical North Atlantic (up to 30% monthly for January). The fact that a significant proportion of rainfall is recycled highlights that water availability in the Andean and Caribbean regions of Colombia could potentially be altered by current widespread and pervasive changes in vegetation cover. More generally, our results highlight the need to assess the hydrological consequences of land cover change in South America, particularly in a country like Colombia where water, food, and energy security all depend directly on precipitation.

Large rivers, slow drainage rearrangements: The ongoing fluvial piracy of a major river by its tributary in the Branco River Basin - Northern Amazon

Drainage capture between large rivers is a rare occurrence and as such the dynamics are poorly understood. In fact, most of our knowledge about this process is based on a previousstudy of the active drainage capture between the Orinoco and Negro rivers in the Northern Amazon Basin. The present study identifies and characterises a large drainage capture in progress of the Uraricoera River by its tributary the Uraricaá River within the Branco River Basin of the Northern Amazon. Our analysis of topographical features and a series of historical satellite images suggests that this type of river capture tends to be very slow and can take centuries to be complete. It was also established that river courses can be captured by their tributaries just upstream of where they converge. We suggest that accelerated headward erosion, driven by subsidence along the Branco and Negro rivers, is leading to stream piracy in the northern portion of the Amazon Basin.

Effect of using isolated interannual and decadal time scales on the water balance of the Amazon basin

In this study, we evaluated the isolated effects of interannual and decadal time scales on the water balance of the Amazon basin. This research is interesting because it brings the dynamical response of water balance components to a particular ocean-scale variability. For this, we used the Brazilian Global Atmospheric Model (BAM) and SST filtering techniques. The impact of isolated interannual and decadal time scales was quantified for episodes of ENSO and the Atlantic dipole (AD). The results show that isolated interannual scales weaken the impacts of El Niño and La Niña on water balance components in the northern Amazon and northeastern Brazil. Such weakening is more evident in episodes of El Niño than in those of La Niña. This indicates that El Niño is more dependent on other time scales (in addition to interannual) than is La Niña. In relation to the Atlantic, a positive AD increases (decreases) precipitation in the northern (southern) Amazon basin in the experiment with all SST time scale variabilities. On the other hand, when the decadal scale is isolated, an increase in precipitation in the northern basin is not observed, losing the dipole pattern in the precipitation anomaly between the northern and southern Amazon basin. BAM is not sensitive to a negative AD when SST is isolated in the decadal scale. These results are important for monitoring the climate of humid tropical regions, mainly for the study of ENSO, since, according to recent research, these extreme events will be increasingly frequent and intense.

Molecular surveillance of the Plasmodium vivax multidrug resistance 1 gene in Peru between 2006 and 2015

BackgroundThe high incidence of Plasmodium vivax infections associated with clinical severity and the emergence of chloroquine (CQ) resistance has posed a challenge to control efforts aimed at eliminating this disease. Despite conflicting evidence regarding the role of mutations of P. vivax multidrug resistance 1 gene (pvmdr1) in drug resistance, this gene can be a tool for molecular surveillance due to its variability and spatial patterns.MethodsBlood samples were collected from studies conducted between 2006 and 2015 in the Northern and Southern Amazon Basin and the North Coast of Peru. Thick and thin blood smears were prepared for malaria diagnosis by microscopy and PCR was performed for detection of P. vivax monoinfections. The pvmdr1 gene was subsequently sequenced and the genetic data was used for haplotype and diversity analysis.ResultsA total of 550 positive P. vivax samples were sequenced; 445 from the Northern Amazon Basin, 48 from the Southern Amazon Basin and 57 from the North Coast. Eight non-synonymous mutations and three synonymous mutations were analysed in 4,395 bp of pvmdr1. Amino acid changes at positions 976F and 1076L were detected in the Northern Amazon Basin (12.8%) and the Southern Amazon Basin (4.2%) with fluctuations in the prevalence of both mutations in the Northern Amazon Basin during the course of the study that seemed to correspond with a malaria control programme implemented in the region. A total of 13 pvmdr1 haplotypes with non-synonymous mutations were estimated in Peru and an overall nucleotide diversity of π = 0.00054. The Northern Amazon Basin was the most diverse region (π = 0.00055) followed by the Southern Amazon and the North Coast (π = 0.00035 and π = 0.00014, respectively).ConclusionThis study showed a high variability in the frequencies of the 976F and 1076L polymorphisms in the Northern Amazon Basin between 2006 and 2015. The low and heterogeneous diversity of pvmdr1 found in this study underscores the need for additional research that can elucidate the role of this gene on P. vivax drug resistance as well as in vitro and clinical data that can clarify the extend of CQ resistance in Peru.

A Simple Conceptual Model for the Heat Induced Circulation over Northern South America and Meso-America

The physical description of the atmosphere’s general circulation over Northern South America and Meso-America deserves a more comprehensive explanation. This work presents the Pacific coast of Colombia as the rainiest place on Earth, with annual rainfall averaging 5000 to 13,000 mm, and record values as high as 13,159 mm for the location of Puerto López (77∘14′ W, 2∘50′ N). Using information from the ECMWF ERA-40 Atlas and ERA-Interim Reanalysis, we describe the existence of a concentrated diabatic heating source due to condensation and the main features of its related circulation over Northern South America and Meso-America. For simplicity, we used the analytical solution of the Phlips-Gill Model to diagnose the main flow patterns. Results show that the diabatic source over western Colombia generates equatorial trapped Rossby-Kelvin waves, which dominate the low-level circulation. A Kelvin wave explains the low-level easterly flows over the Tropical Atlantic Ocean, the Caribbean Sea, the Venezuelan-Colombian Llanos, and the Northern Amazon Basin. This circulation is analogous to a Walker cell. To the west, two cyclonic flows and strong westerly winds are present in Meso-America and the far eastern Pacific because planetary waves propagate there. A slight asymmetry in the equator’s diabatic heating location is responsible for the intense low-level pressure over Panama. The vertical velocity over the source area induces vortex tube stretching, and zonal mean flow excites a mixed wave and a northward flow.

Natural atmospheric deposition of molybdenum: a global model and implications for tropical forests

Molybdenum (Mo) is an essential trace metal that plays a central role in biological nitrogen fixation (BNF) as the cofactor in the conventional form of the nitrogenase enzyme. The low availability of Mo in soils often constrains BNF in many terrestrial ecosystems. Atmospheric sources may supply a critical source of exogenous Mo to regions with highly weathered soils likely low in Mo, particularly in tropical forests where BNF is thought to be high. Here, we present results of a global model of Mo deposition that considers the principal natural sources of atmospheric Mo—windborne mineral dust, sea-salt aerosols, and volcanic sources—which operate over geologic time. The largest source of mineral dust globally is from North Africa. We quantified Mo concentrations in dust and sediments from the Bodele Depression, a large source within North Africa, to constrain our model. Because the Mo concentration of seawater is relatively high for a trace element, we also hypothesized that sea-salt aerosols would contribute atmospheric Mo. Our model predicts higher Mo deposition to terrestrial ecosystems along coasts downstream in trade winds, near active volcanoes, and in areas that receive dust deposition from North Africa, such as the northern Amazon Basin, the Caribbean, and Central America. Regions with higher Mo deposition tend to be areas where BNF has previously been measured. The lowest Mo deposition occurs in the high latitudes, northern parts of North America, Western Australia, Southern Africa, and much of central South America. Atmospheric transport of Mo likely plays an important role in supplying Mo to ecosystems across geologic time, particularly in regions with highly weathered soils.

<p><strong>A new arborescent <em>Chamaecrista</em> (Leguminosae) from Amazon, Brazil</strong></p>

Chamaecrista ipanorensis, a new arborescent species of caesalpinioid legume restricted to campinarana vegetation (white sand forest) in upper Rio Negro, northern Amazon basin, is described, illustrated, and compared with the morphologically similar species C. hymenaeifolia and C. polystachya.

Reproductive Biology and Hatchling Morphology of the Amazon Toad-headed Turtle (Mesoclemmys raniceps) (Testudines: Chelidae), with Notes on Species Morphology and Taxonomy of the Mesoclemmys Group

Abstract Mesoclemmys raniceps is a medium-sized aquatic turtle widely distributed throughout the northern Amazon Basin in South America. Little information has been published about its reproductive...

Effects of environmental pollution on the rDNAomics of Amazonian fish

Pollution is a growing environmental problem throughout the world, and the impact of human activities on biodiversity and the genetic variability of natural populations is increasingly preoccupying, given that adaptive processes depend on this variability, in particular that found in the repetitive DNA. In the present study, the mitochondrial DNA (COI) and the distribution of repetitive DNA sequences (18S and 5S rDNA) in the fish genome were analysed in fish populations inhabiting both polluted and unpolluted waters in the northern Amazon basin. The results indicate highly complex ribosomal sequences in the fish genome from the polluted environment because these sequences are involved primarily in the maintenance of genome integrity, mediated by a systematic increase in the number of copies of the ribosomal DNA in response to changes in environmental conditions.

Malaria intensity in Colombia by regions and populations.

Determining the distribution of disease prevalence among heterogeneous populations at the national scale is fundamental for epidemiology and public health. Here, we use a combination of methods (spatial scan statistic, topological data analysis and epidemic profile) to study measurable differences in malaria intensity by regions and populations of Colombia. This study explores three main questions: What are the regions of Colombia where malaria is epidemic? What are the regions and populations in Colombia where malaria is endemic? What associations exist between epidemic outbreaks between regions in Colombia? Plasmodium falciparum is most prevalent in the Pacific Coast, some regions of the Amazon Basin, and some regions of the Magdalena Basin. Plasmodium vivax is the most prevalent parasite in Colombia, particularly in the Northern Amazon Basin, the Caribbean, and municipalities of Sucre, Antioquia and Cordoba. We find an acute peak of malarial infection at 25 years of age. Indigenous and Afrocolombian populations experience endemic malaria (with household transmission). We find that Plasmodium vivax decreased in the most important hotspots, often with moderate urbanization rate, and was re-introduced to locations with moderate but sustained deforestation. Infection by Plasmodium falciparum, on the other hand, steadily increased in incidence in locations where it was introduced in the 2009-2010 generalized epidemic. Our findings suggest that Colombia is entering an unstable transmission state, where rapid decreases in one location of the country are interconnected with rapid increases in other parts of the country.

Neotropical Thoasia Liebke, 1939 and Straneotia Mateu, 1961 of the Cryptobatida group, subtribe Agrina: Taxonomic revisions with notes on their ways of life (Insecta, Coleoptera, Carabidae, Lebiini).

Thoasia Liebke, 1939 and Straneotia Mateu, 1961 of the Cryptobatida group, subtribe Agrina, Lebiini, living in the Neotropics are diagnosed, described, and illustrated. Occurrences of known species ranges are limited to the northern and western Amazon Basin and Guyana Shield. The following species are described as new: Thoasia surinamensis Erwin & Aldebron, sp. n., Suriname, Thoasia pterosmaragdos Aldebron & Erwin, sp. n., French Guiana, Thoasia manu Erwin & Aldebron, sp. n., Ecuador, Perú; Straneotia cylindroceps Erwin & Aldebron, sp. n., French Guiana, Straneotia confundis Aldebron & Erwin, sp. n., Ecuador, and Straneotia moi Aldebron & Erwin, sp. n., French Guiana. Two of these species, Thoasia manu and Straneotia moi are known from adults collected by insecticidal fogging of lowland rainforest trees, and these trees are listed in their respective descriptions. The following species are redescribed: Thoasia rugifrons Liebke, 1939, French Guiana, Venezuela; Straneotia freyi Mateu, 1961, Brazil; Straneotia amazonica Mateu, 1961, Brazil.

Intra‐seasonal rainfall variability in the Amazon basin related to large‐scale circulation patterns: a focus on western Amazon–Andes transition region

ABSTRACTThis study aims to relate the intra‐seasonal rainfall variability over the Amazon basin to atmospheric circulation patterns (CPs), with particular attention to extreme rainfall events in the Amazon–Andes region. The CPs summarize the intra‐seasonal variability of atmospheric circulation and are defined using daily low‐level winds from the ERA‐Interim (1.5° × 1.5°) reanalysis for the 1979–2014 period. Furthermore, observational data of precipitation and high‐resolution TRMM 3B42 (∼25 km), 2A25 PR (∼5 km) and CHIRPS (∼5 km) data products are related to the CPs throughout the Amazon basin. Nine CPs are determined using a hybrid method that combines a neural network technique (self‐organizing maps, SOM) and hierarchical ascendant classification. The CPs are characterized by a specific cycle with alternative transitions and a duration of 14 days on average. This configuration initially results in northerly winds to southerly winds towards the northern or eastern Amazon basin. The related rainfall suggests that it is driven mainly by CP dynamics. In addition, we demonstrate a good agreement amongst the four rainfall data sets: observed precipitation, TRMM 3B42, TRMM 2A25 PR and CHIRPS. Furthermore, special attention is given to the Amazon–Andes transition region. Over this region, two particular CPs (CP4 and CP5) are identified as the key contributors of maximum and minimum daily rainfall, respectively. Thus, during the dry season, 40.8% (11.4%) of the CP5 (CP4) days demonstrate rainfall of less than 1 mm day−1, while during the wet season, 6.2% (14.6%) of the CP5 (CP4) days show rainfall amounts higher than the seasonal 90th percentile (10.4 mm day−1). This study provides additional information concerning the intra‐seasonal circulation variability in Amazonia and demonstrates the value of using remote sensing precipitation data in this region as a tool for forecast in areas lacking observable information.

Hydrogeological characterisation of groundwater over Brazil using remotely sensed and model products

For Brazil, a country frequented by droughts and whose rural inhabitants largely depend on groundwater, reliance on isotope for its monitoring, though accurate, is expensive and limited in spatial coverage. We exploit total water storage (TWS) derived from Gravity Recovery and Climate Experiment (GRACE) satellites to analyse spatial-temporal groundwater changes in relation to geological characteristics. Large-scale groundwater changes are estimated using GRACE-derived TWS and altimetry observations in addition to GLDAS and WGHM model outputs. Additionally, TRMM precipitation data are used to infer impacts of climate variability on groundwater fluctuations. The results indicate that climate variability mainly controls groundwater change trends while geological properties control change rates, spatial distribution, and storage capacity. Granular rocks in the Amazon and Guarani aquifers are found to influence larger storage capability, higher permeability (>10-4 m/s) and faster response to rainfall (1 to 3months' lag) compared to fractured rocks (permeability <10-7 m/s and lags > 3months) found only in Bambui aquifer. Groundwater in the Amazon region is found to rely not only on precipitation but also on inflow from other regions. Areas beyond the northern and southern Amazon basin depict a ‘dam-like’ pattern, with high inflow and slow outflow rates (recharge slope > 0.75, discharge slope < 0.45). This is due to two impermeable rock layer-like ‘walls' (permeability <10-8 m/s) along the northern and southern Alter do Chão aquifer that help retain groundwater. The largest groundwater storage capacity in Brazil is the Amazon aquifer (with annual amplitudes of > 30cm). Amazon's groundwater declined between 2002 and 2008 due to below normal precipitation (wet seasons lasted for about 36 to 47% of the time). The Guarani aquifer and adjacent coastline areas rank second in terms of storage capacity, while the northeast and southeast coastal regions indicate the smallest storage capacity due to lack of rainfall (annual average is rainfall <10cm).

Floristic survey of herbaceous and subshrubby aquatic and palustrine angiosperms of Viruá National Park, Roraima, Brazil.

We provide and discuss a floristic survey of herbaceous and subshrubby aquatic and palustrine angiosperms of Viruá National Park (VNP). The VNP is located in the northern Amazon basin and displays phytophysiognomies distributed in a mosaic where these plants occur, as flooded forests, hydromorphic white-sand savannas, “buritizais” and waterbodies. After expeditions between February/2010 and January/2015 and the analysis of specimens from regional herbaria, we list 207 species of herbaceous and subshrubby aquatic and palustrine angiosperms for the VNP, distributed in 85 genera in 37 families. We recorded six new occurrences for Brazil, two for the northern Brazilian region and 21 for Roraima state. These new occurrences, added to the other species listed here, highlight the floristic similarity between the study site and the Guiana Shield, an adjacent phytogeographical unit and geologically related to the origin of white-sand savannas.

Population parameters of the fish fauna in a long-established Amazonian reservoir (Amapá, Brazil)

Summary The present study focused on the fish fauna of the 44-year-old Coaracy Nunes reservoir in the northern Amazon basin, producing estimates of the growth constant (k), maximum and asymptotic body lengths and weights, natural mortality (M), the consumption/biomass ratio (QB) (intake of food by a group over a year), the Aspect ratio (Ar) of the caudal fin, growth performance (Φ), longevity, and trophic level for 45 fish species. Species collection was divided into eight sampling campaigns between May 2009 and July 2010. Gillnets were used in four of the sampling sites. The results revealed that (i) the most predominant species are Ageneiosus ucayalensis, Hemiodus unimaculatus, Serrasalmus gibbus and Geophagus proximus; (ii) small and medium-sized fishes predominated in the community, characterized by high rates of growth and natural mortality, consistent with a predominance of r-strategists; (iii) the body lengths of the detritivore species were similar to those of the piscivores, which are normally larger, but with higher growth rates, more similar to those recorded for the omnivores; (iv) consumption/biomass ratio (QB) × body length relationship is higher in the detritivores than in the omnivores and piscivores (which were similar to each other). Overall, the reservoir habitat appears to be advantageous to detritivorous fish species.