On January 21st, 2016, a Ms 6.4 earthquake hit Menyuan County, Qinghai province, China. The nearest known fault is the Leng Long Ling (LLL) fault which is located approximately 7 km north of the epicenter. This fault has mainly shown sinistral strike-slip movement since the late Quaternary Period. However, the focal mechanism indicates that it is a thrust earthquake, which is different from the well-known strike-slip feature of the LLL fault. In this study, we determined the focal mechanism and primary nodal plane through multi-step inversions in the frequency and time domain by using the broadband regional seismic waveforms recorded by the China Digital Seismic Network (CDSN). Our results show that the rupture duration was short, within 0–2 s after the earthquake, and the rupture expanded upwards along the fault plane. Based on these fault parameters, we then solve for variable slip distribution on the fault plane using the InSAR data. We applied a three-segment fault model to simulate the arc-shaped structure of the northern LLL fault, and obtained a detailed slip distribution on the fault plane. The inversion results show that the maximum slip is 0.43 m, and the average slip angle is 78.8°, with a magnitude of Mw 6.0 and a focal depth of 9.38 km. With the geological structure and the inversion results taken into consideration, it can be suggested that this earthquake was caused by the arc-shaped secondary fault located at the north side of the LLL fault. The secondary fault, together with the LLL fault, forms a normal flower structure. The main LLL fault extends almost vertically into the base rock and the rocks between the two faults form a bulging fault block. Therefore, we infer that this earthquake is the manifestation of a neotectonics movement, in which the bulging fault block is lifted further up under the compresso-shear action caused by the Tibetan Plateau pushing towards the northwest direction.